pick_otus:enable_rev_strand_match True
align_seqs:template_fp /home/qiime/SILVA123_QIIME_release/core_alignment/core_alignment_SILVA123.fasta
filter_alignment:allowed_gap_frac 0.80
filter_alignment:entropy_threshold 0.10
filter_alignment:suppress_lane_mask_filter True
assign_taxonomy:reference_seqs_fp /home/qiime/SILVA123_QIIME_release/rep_set/rep_set_all/99/99_otus.fasta
assign_taxonomy:id_to_taxonomy_fp /home/qiime/SILVA123_QIIME_release/taxonomy/16S_only/99/taxonomy_7_levels.txt