Aug 4 11:41 unix306 bar_exedMISEQ0714% print_qiime_config.py -t

System information
==================
         Platform:	linux2
   Python version:	2.7 (r27:82500, Sep 12 2010, 22:20:51)  [GCC 4.1.2 20080704 (Red Hat 4.1.2-48)]
Python executable:	/usr/local/bioinf/bin/python

QIIME default reference information
===================================
For details on what files are used as QIIME's default references, see here:
 https://github.com/biocore/qiime-default-reference/releases/tag/0.1.3

Dependency versions
===================
          QIIME library version:	1.9.1-dev
           QIIME script version:	1.9.1-dev
qiime-default-reference version:	0.1.3
                  NumPy version:	1.11.1
                  SciPy version:	0.17.1
                 pandas version:	0.16.0
             matplotlib version:	1.3.1
            biom-format version:	2.1.5
                   h5py version:	2.5.0 (HDF5 version: 1.8.14)
                   qcli version:	0.1.1
                   pyqi version:	0.3.2
             scikit-bio version:	0.2.3
                 PyNAST version:	1.2.2
                Emperor version:	0.9.51
                burrito version:	0.9.1
       burrito-fillings version:	0.1.1
              sortmerna version:	SortMeRNA version 2.0, 29/11/2014
              sumaclust version:	SUMACLUST Version 1.0.00
                  swarm version:	Swarm 1.2.19 [Jul 21 2016 16:10:28]
                          gdata:	Installed.

QIIME config values
===================
For definitions of these settings and to learn how to configure QIIME, see here:
 http://qiime.org/install/qiime_config.html
 http://qiime.org/tutorials/parallel_qiime.html

                     blastmat_dir:	/usr/local/bioinfsoftware/qiime/current/qiime-deploy/qiime_software/blast-2.2.22-release/data
      pick_otus_reference_seqs_fp:	/usr/local/bioinfsoftware/python/current/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
                    python_exe_fp:	python
                         sc_queue:	all.q
      topiaryexplorer_project_dir:	None
     pynast_template_alignment_fp:	/usr/local/bioinfsoftware/qiime/current/qiime-deploy/qiime_software/core_set_aligned.fasta.imputed
                  cluster_jobs_fp:	/usr/local/bioinfsoftware/qiime/src/Qiime/scripts/start_parallel_jobs.py
pynast_template_alignment_blastdb:	None
assign_taxonomy_reference_seqs_fp:	/usr/local/bioinfsoftware/qiime/current/qiime-deploy/qiime_software/gg_otus-13_8-release/rep_set/97_otus.fasta
                     torque_queue:	friendlyq
   template_alignment_lanemask_fp:	/usr/local/bioinfsoftware/qiime/current/qiime-deploy/qiime_software/lanemask_in_1s_and_0s
                    jobs_to_start:	4
                       slurm_time:	None
                cloud_environment:	False
                qiime_scripts_dir:	/usr/local/bioinfsoftware/qiime/src/Qiime/scripts
            denoiser_min_per_core:	50
                      working_dir:	/home/users/allstaff/penington.j/.TemporaryItems
assign_taxonomy_id_to_taxonomy_fp:	/usr/local/bioinfsoftware/qiime/current/qiime-deploy/qiime_software/gg_otus-13_8-release/taxonomy/97_otu_taxonomy.txt
                         temp_dir:	/home/users/allstaff/penington.j/.TemporaryItems/
                     slurm_memory:	None
                      slurm_queue:	None
                      blastall_fp:	blastall
                 seconds_to_sleep:	2

QIIME base install test results
===============================
...F.....
======================================================================
FAIL: test_for_unrecognized_values (__main__.QIIMEDependencyBase)
qiime_config has no extra values
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/bioinfsoftware/python/current/bin/print_qiime_config.py", line 313, in test_for_unrecognized_values
    error_msg_fragment % ", ".join(extra_vals))
AssertionError: The .qiime_config in your HOME contains unrecognized values:
cloud_environment, qiime_scripts_dir, template_alignment_lanemask_fp, working_dir, python_exe_fp
You can safely remove these values from your QIIME config file as they will be ignored by QIIME.

----------------------------------------------------------------------
Ran 9 tests in 0.241s

FAILED (failures=1)