pick_otus:enable_rev_strand_match True

#added 4_3_16

filter_alignment:suppress_lane_mask_filter True
filter_alignment:entropy_threshold 0.10
align_seqs:template_fp /scratch/seth.wollney/silva/core_Silva119_alignment.fna

assign_taxonomy:assignment_method blast
assign_taxonomy:id_to_taxonomy_fp /scratch/seth.wollney/silva/taxonomy_97_all_levels_18S.txt
assign_taxonomy:reference_seqs_fp /scratch/seth.wollney/silva/Silva_119_rep_set97_18S.fna
assign_taxonomy:blast_db /scratch/seth.wollney/silva/core_Silva119_alignment.fna
align_seqs:min_percent_id 60.0