Logging started at 11:16:51 on 24 Feb 2013
QIIME version: 1.6.0

qiime_config values:
blastmat_dir	/home/qiime/qiime_software/blast-2.2.22-release/data
sc_queue	all.q
pynast_template_alignment_fp	/home/qiime/qiime_software/core_set_aligned.fasta.imputed
cluster_jobs_fp	/home/qiime/qiime_software/qiime-1.6.0-release/bin/start_parallel_jobs.py
assign_taxonomy_reference_seqs_fp	/home/qiime/qiime_software/gg_otus-12_10-release/rep_set/97_otus.fasta
torque_queue	friendlyq
qiime_test_data	/home/qiime/qiime_software/qiime_test_data-1.6.0-repository-c03748c8
template_alignment_lanemask_fp	/home/qiime/qiime_software/lanemask_in_1s_and_0s
jobs_to_start	1
cloud_environment	False
qiime_scripts_dir	/home/qiime/qiime_software/qiime-1.6.0-release/bin
denoiser_min_per_core	50
working_dir	/tmp/
python_exe_fp	/home/qiime/qiime_software/python-2.7.3-release/bin/python
temp_dir	/tmp/
blastall_fp	/home/qiime/qiime_software/blast-2.2.22-release/bin/blastall
seconds_to_sleep	60
assign_taxonomy_id_to_taxonomy_fp	/home/qiime/qiime_software/gg_otus-12_10-release/taxonomy/97_otu_taxonomy.txt

parameter file values:
parallel:jobs_to_start	1

Input file md5 sums:
split_library_output/seqs.fna: 602f6d8383a2b1efca65edfa94a551cb

Executing commands.

# Pick OTUs command 
/home/qiime/qiime_software/python-2.7.3-release/bin/python /home/qiime/qiime_software/qiime-1.6.0-release/bin/pick_otus.py -i split_library_output/seqs.fna -o otus/uclust_picked_otus 

Stdout:

Stderr:

# Pick representative set command 
/home/qiime/qiime_software/python-2.7.3-release/bin/python /home/qiime/qiime_software/qiime-1.6.0-release/bin/pick_rep_set.py -i otus/uclust_picked_otus/seqs_otus.txt -f split_library_output/seqs.fna -l otus/rep_set//seqs_rep_set.log -o otus/rep_set//seqs_rep_set.fasta 

Stdout:

Stderr:

# Assign taxonomy command 
/home/qiime/qiime_software/python-2.7.3-release/bin/python /home/qiime/qiime_software/qiime-1.6.0-release/bin/assign_taxonomy.py -o otus/rdp_assigned_taxonomy -i otus/rep_set//seqs_rep_set.fasta