System information ================== Platform: linux2 Python version: 2.7.3 (default, Dec 18 2014, 19:10:20) [GCC 4.6.3] Python executable: /usr/bin/python QIIME default reference information =================================== For details on what files are used as QIIME's default references, see here: https://github.com/biocore/qiime-default-reference/releases/tag/0.1.2 Dependency versions =================== QIIME library version: 1.9.1 QIIME script version: 1.9.1 qiime-default-reference version: 0.1.2 NumPy version: 1.9.2 SciPy version: 0.15.1 pandas version: 0.16.1 matplotlib version: 1.4.3 biom-format version: 2.1.4 h5py version: 2.4.0 (HDF5 version: 1.8.4) qcli version: 0.1.1 pyqi version: 0.3.2 scikit-bio version: 0.2.3 PyNAST version: 1.2.2 Emperor version: 0.9.51 burrito version: 0.9.1 burrito-fillings version: 0.1.1 sortmerna version: SortMeRNA version 2.0, 29/11/2014 sumaclust version: SUMACLUST Version 1.0.00 swarm version: Swarm 1.2.19 [May 26 2015 13:50:14] gdata: Installed. QIIME config values =================== For definitions of these settings and to learn how to configure QIIME, see here: http://qiime.org/install/qiime_config.html http://qiime.org/tutorials/parallel_qiime.html blastmat_dir: /qiime_software/blast-2.2.22-release/data pick_otus_reference_seqs_fp: /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta sc_queue: all.q topiaryexplorer_project_dir: None pynast_template_alignment_fp: /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta cluster_jobs_fp: start_parallel_jobs.py pynast_template_alignment_blastdb: None assign_taxonomy_reference_seqs_fp: /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta torque_queue: friendlyq jobs_to_start: 1 slurm_time: None denoiser_min_per_core: 50 assign_taxonomy_id_to_taxonomy_fp: /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt temp_dir: /tmp/ slurm_memory: None slurm_queue: None blastall_fp: /qiime_software/blast-2.2.22-release/bin/blastall seconds_to_sleep: 1 QIIME base install test results =============================== ......... ---------------------------------------------------------------------- Ran 9 tests in 0.006s OK