QIIME default reference information =================================== For details on what files are used as QIIME's default references, see here: https://github.com/biocore/qiime-default-reference/releases/tag/0.1.3 Dependency versions =================== QIIME library version: 1.9.1 QIIME script version: 1.9.1 qiime-default-reference version: 0.1.3 NumPy version: 1.8.2 SciPy version: 0.13.3 pandas version: 0.17.1 matplotlib version: 1.3.1 biom-format version: 2.1.4 h5py version: 2.5.0 (HDF5 version: 1.8.11) qcli version: 0.1.0 pyqi version: 0.3.2 scikit-bio version: 0.2.3 PyNAST version: 1.2.2 Emperor version: 0.9.51 burrito version: 0.9.1 burrito-fillings version: 0.1.1 sortmerna version: SortMeRNA version 2.0, 29/11/2014 sumaclust version: SUMACLUST Version 1.0.00 swarm version: Swarm 1.2.19 [May 25 2016 14:36:46] gdata: Installed. RDP Classifier version (if installed): rdp_classifier-2.2.jar Java version (if installed): 1.8.0_66 QIIME config values =================== For definitions of these settings and to learn how to configure QIIME, see here: http://qiime.org/install/qiime_config.html http://qiime.org/tutorials/parallel_qiime.html blastmat_dir: /opt/qiime_deps/blast-2.2.22-release/data cluster_jobs_fp: None pick_otus_reference_seqs_fp: /usr/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta jobs_to_start: 1 pynast_template_alignment_blastdb: None qiime_scripts_dir: /usr/lib/qiime/bin/ working_dir: . pynast_template_alignment_fp: /usr/share/qiime/data/core_set_aligned.fasta.imputed python_exe_fp: python temp_dir: /tmp/ assign_taxonomy_reference_seqs_fp: # /usr/share/qiime/data/gg_13_8_otus/rep_set/97_otus.fasta blastall_fp: /opt/qiime_deps/blast-2.2.22-release/bin/blastall seconds_to_sleep: 60 assign_taxonomy_id_to_taxonomy_fp: # /usr/share/qiime/data/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt QIIME full install test results =============================== ........................... ---------------------------------------------------------------------- Ran 27 tests in 0.443s OK