Logging started at 10:03:54 on 21 Jun 2016
QIIME version: 1.9.1

qiime_config values:
pick_otus_reference_seqs_fp	/macqiime/anaconda/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
sc_queue	all.q
pynast_template_alignment_fp	/macqiime/anaconda/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta
cluster_jobs_fp	start_parallel_jobs.py
assign_taxonomy_reference_seqs_fp	/macqiime/anaconda/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
torque_queue	friendlyq
jobs_to_start	1
denoiser_min_per_core	50
assign_taxonomy_id_to_taxonomy_fp	/macqiime/anaconda/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
temp_dir	/tmp/
blastall_fp	blastall
seconds_to_sleep	60

parameter file values:
parallel:jobs_to_start	3

Input file md5 sums:
/Users/kirstengrond/Desktop/Sequences/Chick/Chick_Env/seqs_Chick_Env: 90013e2cb21be211d81300fd6c193454
/Users/kirstengrond/Desktop/KSU/Myproject/Analyses/QIIME/gg_13_8_otus/rep_set/97_otus.fasta: 50b2269712b3738afb41892bed936c29

Executing commands.

# Pick Reference OTUs command 
parallel_pick_otus_uclust_ref.py -i /Users/kirstengrond/Desktop/Sequences/Chick/Chick_Env/seqs_Chick_Env -o /Users/kirstengrond/Desktop/Sequences/Chick/Chick_Env/OpenRefOTUs/step1_otus -r /Users/kirstengrond/Desktop/KSU/Myproject/Analyses/QIIME/gg_13_8_otus/rep_set/97_otus.fasta -T --jobs_to_start 3