INFO:radiomics.featureextractor: No valid config parameter, using defaults: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 'sitkBSpline', 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True} INFO:radiomics.featureextractor: Enabled image types: {'Original': {}} INFO:radiomics.featureextractor: Enabled features: {'firstorder': [], 'glcm': [], 'gldm': [], 'glrlm': [], 'glszm': [], 'ngtdm': [], 'shape': []} INFO:radiomics.featureextractor: Applying custom setting overrides: {'binWidth': 25, 'resampledPixelSpacing': None, 'interpolator': 3} DEBUG:radiomics.featureextractor: Settings: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 3, 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True, 'binWidth': 25} DEBUG:radiomics.featureextractor: Disabling all feature classes DEBUG:radiomics.featureextractor: Updating enabled features with {'firstorder': ['Mean', 'Skewness']} DEBUG:radiomics.featureextractor: Enabled features: {'firstorder': ['Mean', 'Skewness']} INFO:radiomics.featureextractor: Calculating features with label: 1 DEBUG:radiomics.featureextractor: Enabled images types: {'Original': {}} DEBUG:radiomics.featureextractor: Enabled features: {'firstorder': ['Mean', 'Skewness']} DEBUG:radiomics.featureextractor: Current settings: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 3, 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True, 'binWidth': 25} INFO:radiomics.featureextractor: Loading image and mask DEBUG:radiomics.imageoperations: Force casting mask to UInt32 to ensure correct datatype. DEBUG:radiomics.imageoperations: Checking mask with label 1 DEBUG:radiomics.imageoperations: Calculating bounding box DEBUG:radiomics.imageoperations: Checking minimum number of dimensions requirements (2) DEBUG:radiomics.featureextractor: Image and Mask loaded and valid, starting extraction DEBUG:radiomics.imageoperations: Cropping to size [47 70 7] DEBUG:radiomics.featureextractor: Creating image type iterator INFO:radiomics.featureextractor: Adding image type "Original" with custom settings: {} DEBUG:radiomics.featureextractor: Extracting features DEBUG:radiomics.imageoperations: Yielding original image INFO:radiomics.featureextractor: Calculating features for original image DEBUG:radiomics.imageoperations: Cropping to size [47 70 7] INFO:radiomics.featureextractor: Computing firstorder DEBUG:radiomics.firstorder: Initializing feature class DEBUG:radiomics.imageoperations: Discretizing gray levels inside ROI DEBUG:radiomics.imageoperations: Calculated 34 bins for bin width 25 with edges: [ 450 475 500 525 550 575 600 625 650 675 700 725 750 775 800 825 850 875 900 925 950 975 1000 1025 1050 1075 1100 1125 1150 1175 1200 1225 1250 1275 1300]) DEBUG:radiomics.firstorder: First order feature class initialized DEBUG:radiomics.firstorder: Calculating features DEBUG:radiomics.featureextractor: Features extracted