Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 2
Rules claiming more threads will be scaled down.
Job stats:
job                          count    min threads    max threads
-------------------------  -------  -------------  -------------
add_electricity                  1              1              1
add_extra_components             1              1              1
base_network                     1              1              1
build_bus_regions                1              1              1
build_demand_profiles            1              1              1
build_natura_raster              1              1              1
build_osm_network                1              1              1
build_powerplants                1              1              1
build_renewable_profiles         5              2              2
build_shapes                     1              1              1
clean_osm_data                   1              1              1
cluster_network                  1              1              1
download_osm_data                1              1              1
prepare_network                  1              1              1
retrieve_databundle_light        1              1              1
simplify_network                 1              1              1
solve_all_networks               1              1              1
solve_network                    1              2              2
total                           22              1              2

Select jobs to execute...

[Thu Feb 23 11:21:22 2023]
rule retrieve_databundle_light:
    output: data/custom_powerplants.csv, data/hydro_capacities.csv, cutouts/africa-2013-era5-tutorial.nc, data/hydrobasins/hybas_world_lev05_v1c.shp, data/hydrobasins/hybas_world_lev04_v1c.shp, data/gebco/GEBCO_2021_TID.nc, data/copernicus/PROBAV_LC100_global_v3.0.1_2019-nrt_Discrete-Classification-map_EPSG-4326.tif, data/costs.csv, data/ssp2-2.6/2030/era5_2013/Africa.nc, data/eez/eez_v11.gpkg, data/landcover
    log: logs/retrieve_databundle.log
    jobid: 9
    benchmark: benchmarks/retrieve_databundle_light
    reason: Missing output files: data/custom_powerplants.csv, data/hydro_capacities.csv, cutouts/africa-2013-era5-tutorial.nc, data/gebco/GEBCO_2021_TID.nc, data/copernicus/PROBAV_LC100_global_v3.0.1_2019-nrt_Discrete-Classification-map_EPSG-4326.tif, data/ssp2-2.6/2030/era5_2013/Africa.nc, data/landcover, data/eez/eez_v11.gpkg
    resources: tmpdir=/tmp

[Thu Feb 23 11:21:22 2023]
rule download_osm_data:
    output: resources/osm/raw/all_raw_cables.geojson, resources/osm/raw/all_raw_generators.geojson, resources/osm/raw/all_raw_generators.csv, resources/osm/raw/all_raw_lines.geojson, resources/osm/raw/all_raw_substations.geojson
    log: logs/download_osm_data.log
    jobid: 15
    benchmark: benchmarks/download_osm_data
    reason: Missing output files: resources/osm/raw/all_raw_lines.geojson, resources/osm/raw/all_raw_cables.geojson, resources/osm/raw/all_raw_substations.geojson, resources/osm/raw/all_raw_generators.geojson
    resources: tmpdir=/tmp

[Thu Feb 23 11:21:23 2023]
Error in rule download_osm_data:
    jobid: 15
    output: resources/osm/raw/all_raw_cables.geojson, resources/osm/raw/all_raw_generators.geojson, resources/osm/raw/all_raw_generators.csv, resources/osm/raw/all_raw_lines.geojson, resources/osm/raw/all_raw_substations.geojson
    log: logs/download_osm_data.log (check log file(s) for error details)

Waiting at most 5 seconds for missing files.
MissingOutputException in rule retrieve_databundle_light in file /home/bruce/pypsa-earth/pypsa-earth/pypsa-earth/Snakefile, line 133:
Job 9  completed successfully, but some output files are missing. Missing files after 5 seconds. This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait:
data/custom_powerplants.csv
data/hydro_capacities.csv
cutouts/africa-2013-era5-tutorial.nc
data/hydrobasins/hybas_world_lev05_v1c.shp
data/hydrobasins/hybas_world_lev04_v1c.shp
data/gebco/GEBCO_2021_TID.nc
data/copernicus/PROBAV_LC100_global_v3.0.1_2019-nrt_Discrete-Classification-map_EPSG-4326.tif
data/costs.csv
data/ssp2-2.6/2030/era5_2013/Africa.nc
data/eez/eez_v11.gpkg
data/landcover
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2023-02-23T112120.471210.snakemake.log