(base) C:\Users\physics>D:
(base) D:\>cd pymedphys\config
(base) D:\pymedphys\config>dir
Volume in drive D is DATA
Volume Serial Number is 6811-8670
Directory of D:\pymedphys\config
31/05/2020 12:13 AM
.
31/05/2020 12:13 AM ..
01/06/2020 05:37 PM 3,734 config.toml
30/05/2020 11:20 PM 89 config_linac_details.csv
30/05/2020 11:19 PM 109 config_mosaiq_sql.csv
30/05/2020 05:17 PM 196 getTRF.bat
30/05/2020 03:58 PM 108 iComINF.bat
30/05/2020 03:58 PM 109 iComVHD.bat
27/05/2020 12:53 AM 331,264 nssm.exe
27/05/2020 12:54 AM 28,414 README_nssm.txt
30/05/2020 03:58 PM 772 services-install.bat
30/05/2020 03:12 PM 88 services-start.bat
30/05/2020 03:30 PM 86 services-stop.bat
30/05/2020 03:30 PM 106 services-uninstall.bat
12 File(s) 365,075 bytes
2 Dir(s) 426,631,749,632 bytes free
(base) D:\pymedphys\config>getTRF
(base) D:\pymedphys\config>REM schedule this nightly
(base) D:\pymedphys\config>pymedphys logfile orchestration -m C:\Users\physics\.pymedphys\data\config_mosaiq_sql.csv -l C:\Users\physics\.pymedphys\data\config_linac_details.csv D:\pymedphys\TRF
Data directory used:
D:\pymedphys\TRF
Traceback (most recent call last):
File "c:\users\physics\miniconda3\lib\site-packages\pandas\core\indexes\base.py", line 4410, in get_value
return libindex.get_value_at(s, key)
File "pandas\_libs\index.pyx", line 44, in pandas._libs.index.get_value_at
File "pandas\_libs\index.pyx", line 45, in pandas._libs.index.get_value_at
File "pandas\_libs\util.pxd", line 98, in pandas._libs.util.get_value_at
File "pandas\_libs\util.pxd", line 83, in pandas._libs.util.validate_indexer
TypeError: 'str' object cannot be interpreted as an integer
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "c:\users\physics\miniconda3\lib\runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "c:\users\physics\miniconda3\lib\runpy.py", line 85, in _run_code
exec(code, run_globals)
File "C:\Users\physics\Miniconda3\Scripts\pymedphys.exe\__main__.py", line 9, in
File "c:\users\physics\miniconda3\lib\site-packages\pymedphys\cli\main.py", line 87, in pymedphys_cli
args.func(args)
File "c:\users\physics\miniconda3\lib\site-packages\pymedphys\labs\managelogfiles\orchestration.py", line 107, in orchestration_cli
for centre, row in mosaiq_sql_table.iterrows()
File "c:\users\physics\miniconda3\lib\site-packages\pymedphys\labs\managelogfiles\orchestration.py", line 107, in
for centre, row in mosaiq_sql_table.iterrows()
File "c:\users\physics\miniconda3\lib\site-packages\pandas\core\series.py", line 871, in __getitem__
result = self.index.get_value(self, key)
File "c:\users\physics\miniconda3\lib\site-packages\pandas\core\indexes\base.py", line 4418, in get_value
raise e1
File "c:\users\physics\miniconda3\lib\site-packages\pandas\core\indexes\base.py", line 4404, in get_value
return self._engine.get_value(s, k, tz=getattr(series.dtype, "tz", None))
File "pandas\_libs\index.pyx", line 80, in pandas._libs.index.IndexEngine.get_value
File "pandas\_libs\index.pyx", line 90, in pandas._libs.index.IndexEngine.get_value
File "pandas\_libs\index.pyx", line 138, in pandas._libs.index.IndexEngine.get_loc
File "pandas\_libs\hashtable_class_helper.pxi", line 1619, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas\_libs\hashtable_class_helper.pxi", line 1627, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'Timezone'
(base) D:\pymedphys\config>