make lib make[1]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1' make -C src make[2]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src' make -C lib make[3]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make dirslinks make[4]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' *** Updating links to used modules in all directories *** make ../analysis.links ../bias.links ../blas.links ../cltools.links ../colvar.links ../config.links ../core.links ../function.links ../generic.links ../gridtools.links ../isdb.links ../lapack.links ../lepton.links ../main.links ../mapping.links ../molfile.links ../multicolvar.links ../reference.links ../secondarystructure.links ../setup.links ../tools.links ../vatom.links ../vesselbase.links ../wrapper.links make[5]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make -C ../analysis links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/analysis make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' make -C ../bias links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/bias make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' make -C ../blas links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/blas make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' make -C ../cltools links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/cltools make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' make -C ../colvar links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/colvar' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/colvar make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/colvar' make -C ../config links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' Nothing to do in /home/acusers/pbalaji/install/plumed-2.4.1/src/config make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make -C ../core links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/core make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' make -C ../function links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/function make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' make -C ../generic links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/generic' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/generic make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/generic' make -C ../gridtools links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools' make -C ../isdb links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/isdb make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' make -C ../lapack links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/lapack make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' make -C ../lepton links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/lepton make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' make -C ../main links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/main make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' make -C ../mapping links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/mapping make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' make -C ../molfile links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/molfile make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' make -C ../multicolvar links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' make -C ../reference links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/reference make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' make -C ../secondarystructure links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' make -C ../setup links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/setup make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' make -C ../tools links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/tools make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' make -C ../vatom links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/vatom make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' make -C ../vesselbase links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' make -C ../wrapper links make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' Nothing to do in /home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' make[5]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[4]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make dirs make[4]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' *** Compiling all directories *** make ../analysis ../bias ../blas ../cltools ../colvar ../config ../core ../function ../generic ../gridtools ../isdb ../lapack ../lepton ../main ../mapping ../molfile ../multicolvar ../reference ../secondarystructure ../setup ../tools ../vatom ../vesselbase ../wrapper make[5]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make -C ../analysis obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' compiling Analysis.cpp compiling AnalysisWithLandmarks.cpp compiling Average.cpp compiling AverageVessel.cpp compiling ClassicalMultiDimensionalScaling.cpp compiling ClassicalScaling.cpp compiling Committor.cpp compiling Histogram.cpp compiling LandmarkRegister.cpp compiling LandmarkSelectionBase.cpp compiling PCA.cpp compiling SelectAllFrames.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' make -C ../bias obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' compiling ABMD.cpp compiling Bias.cpp compiling BiasValue.cpp compiling ExtendedLagrangian.cpp compiling External.cpp compiling LWalls.cpp compiling MaxEnt.cpp compiling MetaD.cpp compiling MovingRestraint.cpp compiling PBMetaD.cpp compiling Restraint.cpp compiling ReweightBase.cpp compiling ReweightBias.cpp compiling ReweightMetad.cpp compiling ReweightTemperature.cpp compiling UWalls.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' make -C ../blas obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' compiling blas.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' make -C ../cltools obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' compiling CLTool.cpp compiling Driver.cpp compiling DriverDouble.cpp In file included from DriverDouble.cpp:23:0: Driver.cpp: In instantiation of 'static void PLMD::cltools::Driver::registerKeywords(PLMD::Keywords&) [with real = double]': DriverDouble.cpp:33:1: required from here Driver.cpp:251:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i::main(FILE*, FILE*, PLMD::Communicator&) [with real = double; FILE = _IO_FILE]': DriverDouble.cpp:36:1: required from here Driver.cpp:383:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i::registerKeywords(PLMD::Keywords&) [with real = float]': DriverFloat.cpp:38:1: required from here Driver.cpp:251:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i::main(FILE*, FILE*, PLMD::Communicator&) [with real = float; FILE = _IO_FILE]': DriverFloat.cpp:41:1: required from here Driver.cpp:383:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i&, int&, bool&, std::vector&, int&)': pesmd.cpp:157:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0; idim ) break; ^ pesmd.cpp:237:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned istep=0; istepdim ) break; ^ pesmd.cpp:256:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( 3*j+k>dim ) break; ^ pesmd.cpp:282:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( 3*j+k>dim ) break; ^ pesmd.cpp:292:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( 3*j+k>dim ) break; ^ pesmd.cpp:302:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( 3*i+j>dim ) break; ^ make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' make -C ../colvar obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/colvar' compiling Angle.cpp compiling Cell.cpp compiling Colvar.cpp compiling Constant.cpp compiling ContactMap.cpp compiling Coordination.cpp compiling CoordinationBase.cpp CoordinationBase.cpp: In member function 'virtual void PLMD::colvar::CoordinationBase::calculate()': CoordinationBase.cpp:198:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i Makefile.conf.xxd compiling Config.cpp compiling ConfigInstall.cpp Building compile_options.sh, a sourceable bash script with some compilation options make[7]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make -C ../core obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' compiling Action.cpp compiling ActionAtomistic.cpp ActionAtomistic.cpp: In member function 'void PLMD::ActionAtomistic::requestAtoms(const std::vector&)': ActionAtomistic.cpp:75:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(indexes[i].index()>=n) error("atom out of range"); ^ compiling ActionPilot.cpp compiling ActionRegister.cpp compiling ActionSet.cpp compiling ActionSetup.cpp compiling ActionWithArguments.cpp compiling ActionWithValue.cpp compiling ActionWithVirtualAtom.cpp compiling Atoms.cpp Atoms.cpp: In member function 'void PLMD::Atoms::setAtomsGatindex(int*, bool)': Atoms.cpp:396:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( gatindex.size()==natoms ) { ^ Atoms.cpp:399:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( gatindex[i]!=i ) { shuffledAtoms=1; break; } ^ Atoms.cpp: In member function 'void PLMD::Atoms::setAtomsContiguous(int)': Atoms.cpp:421:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(gatindex.size() CLToolMainMap.inc ../maketools/makecmd enum < CLToolMain.cpp > CLToolMainEnum.inc compiling CLToolMain.cpp compiling CLToolRegister.cpp compiling Colvar.cpp Colvar.cpp: In member function 'virtual void PLMD::Colvar::apply()': Colvar.cpp:62:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(ncp>4*comm.Get_size()) { ^ Colvar.cpp:102:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(ncp>4*comm.Get_size()) { ^ compiling ExchangePatterns.cpp compiling FlexibleBin.cpp ../maketools/makecmd map < GREX.cpp > GREXMap.inc ../maketools/makecmd enum < GREX.cpp > GREXEnum.inc compiling GREX.cpp compiling MDAtoms.cpp ../maketools/makecmd map < PlumedMain.cpp > PlumedMainMap.inc ../maketools/makecmd enum < PlumedMain.cpp > PlumedMainEnum.inc compiling PlumedMain.cpp compiling PlumedMainInitializer.cpp compiling SetupMolInfo.cpp compiling TargetDist.cpp compiling Value.cpp compiling WithCmd.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' make -C ../function obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' compiling Combine.cpp compiling Ensemble.cpp compiling FuncPathMSD.cpp FuncPathMSD.cpp: In constructor 'PLMD::function::FuncPathMSD::FuncPathMSD(const PLMD::ActionOptions&)': FuncPathMSD.cpp:184:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(neigh_size>getNumberOfArguments()) { ^ compiling FuncSumHills.cpp compiling Function.cpp compiling LocalEnsemble.cpp LocalEnsemble.cpp: In constructor 'PLMD::function::LocalEnsemble::LocalEnsemble(const PLMD::ActionOptions&)': LocalEnsemble.cpp:113:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(oldsize!=-1&&oldsize!=larg.size()) error("In LOCALENSEMBLE you should ha ^ compiling Matheval.cpp compiling Piecewise.cpp compiling Sort.cpp compiling Stats.cpp compiling Target.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' make -C ../generic obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/generic' compiling Debug.cpp compiling DumpAtoms.cpp compiling DumpDerivatives.cpp compiling DumpForces.cpp compiling DumpMassCharge.cpp DumpMassCharge.cpp: In constructor 'PLMD::generic::DumpMassCharge::DumpMassCharge(const PLMD::ActionOptions&)': DumpMassCharge.cpp:131:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0; i neighbours; unsigned num_neighbours; unsigned nfound=0; double minv=0, min ^ compiling FindSphericalContour.cpp compiling FourierTransform.cpp compiling GridPrintingBase.cpp compiling GridToXYZ.cpp compiling GridVessel.cpp In file included from GridVessel.cpp:22:0: GridVessel.h: In constructor 'PLMD::gridtools::GridVessel::GridVessel(const PLMD::vesselbase::VesselOptions&)': GridVessel.h:68:8: warning: 'PLMD::gridtools::GridVessel::noderiv' will be initialized after [-Wreorder] bool noderiv; ^ GridVessel.h:42:12: warning: 'unsigned int PLMD::gridtools::GridVessel::npoints' [-Wreorder] unsigned npoints; ^ GridVessel.cpp:38:1: warning: when initialized here [-Wreorder] GridVessel::GridVessel( const vesselbase::VesselOptions& da ): ^ GridVessel.cpp: In member function 'void PLMD::gridtools::GridVessel::getNeighbors(const std::vector&, const std::vector&, unsigned int&, std::vector&) const': GridVessel.cpp:399:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(!pbc[i] && i0>=nbin[i]) found=false; ^ GridVessel.cpp:401:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( pbc[i] && i0>=nbin[i]) i0%=nbin[i]; ^ compiling HistogramOnGrid.cpp compiling IntegrateGrid.cpp compiling InterpolateGrid.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools' make -C ../isdb obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' compiling CS2Backbone.cpp compiling EMMI.cpp compiling FretEfficiency.cpp compiling Jcoupling.cpp compiling Metainference.cpp compiling MetainferenceBase.cpp compiling NOE.cpp compiling PRE.cpp compiling RDC.cpp compiling Rescale.cpp compiling SAXS.cpp compiling Select.cpp compiling Selector.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' make -C ../lapack obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' compiling lapack.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' make -C ../lepton obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' compiling CompiledExpression.cpp CompiledExpression.cpp: In member function 'void PLMD::lepton::CompiledExpression::compileExpression(const PLMD::lepton::ExpressionTreeNode&, std::vector >&)': CompiledExpression.cpp:124:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < node.getChildren().size(); i++) { ^ CompiledExpression.cpp:146:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 1; i < args.size(); i++) ^ CompiledExpression.cpp: In member function 'double PLMD::lepton::CompiledExpression::evaluate() const': CompiledExpression.cpp:203:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < variablesToCopy.size(); i++) ^ CompiledExpression.cpp:208:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int step = 0; step < operation.size(); step++) { ^ CompiledExpression.cpp:213:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < args.size(); i++) ^ compiling ExpressionProgram.cpp compiling ExpressionTreeNode.cpp ExpressionTreeNode.cpp: In constructor 'PLMD::lepton::ExpressionTreeNode::ExpressionTreeNode(PLMD::lepton::Operation*, const std::vector&)': ExpressionTreeNode.cpp:73:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (operation->getNumArguments() != children.size()) ^ ExpressionTreeNode.cpp: In constructor 'PLMD::lepton::ExpressionTreeNode::ExpressionTreeNode(PLMD::lepton::Operation*, const PLMD::lepton::ExpressionTreeNode&, const PLMD::lepton::ExpressionTreeNode&)': ExpressionTreeNode.cpp:80:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (operation->getNumArguments() != children.size()) ^ ExpressionTreeNode.cpp: In constructor 'PLMD::lepton::ExpressionTreeNode::ExpressionTreeNode(PLMD::lepton::Operation*, const PLMD::lepton::ExpressionTreeNode&)': ExpressionTreeNode.cpp:86:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (operation->getNumArguments() != children.size()) ^ ExpressionTreeNode.cpp: In constructor 'PLMD::lepton::ExpressionTreeNode::ExpressionTreeNode(PLMD::lepton::Operation*)': ExpressionTreeNode.cpp:91:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (operation->getNumArguments() != children.size()) ^ compiling Operation.cpp compiling ParsedExpression.cpp compiling Parser.cpp Parser.cpp: In static member function 'static PLMD::lepton::ParsedExpression PLMD::lepton::Parser::parse(const string&, const std::map, PLMD::lepton::CustomFunction*>&)': Parser.cpp:214:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != tokens.size()) ^ Parser.cpp:223:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != tokens.size()) ^ Parser.cpp: In static member function 'static PLMD::lepton::ExpressionTreeNode PLMD::lepton::Parser::parsePrecedence(const std::vector&, int&, const std::map, PLMD::lepton::CustomFunction*>&, const std::map, PLMD::lepton::ExpressionTreeNode>&, int)': Parser.cpp:234:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == tokens.size()) ^ Parser.cpp:260:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightP ^ Parser.cpp:274:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightP ^ make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' make -C ../main obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' compiling main.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' make -C ../mapping obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' compiling AdaptivePath.cpp AdaptivePath.cpp: In constructor 'PLMD::mapping::AdaptivePath::AdaptivePath(const PLMD::ActionOptions&)': AdaptivePath.cpp:141:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; iresi ^ PCAVars.cpp: In member function 'virtual void PLMD::mapping::PCAVars::calculate()': PCAVars.cpp:353:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0; i&, std::vector&)': PathReparameterization.h:47:41: warning: 'PLMD::mapping::PathReparameterization::mypath' will be initialized after [-Wreorder] std::vector& mypath; ^ PathReparameterization.h:43:14: warning: 'const PLMD::Pbc& PLMD::mapping::PathReparameterization::pbc' [-Wreorder] const Pbc& pbc; ^ PathReparameterization.cpp:27:1: warning: when initialized here [-Wreorder] PathReparameterization::PathReparameterization( const Pbc& ipbc, const std::vec ^ In file included from PathReparameterization.cpp:22:0: PathReparameterization.h:45:30: warning: 'PLMD::mapping::PathReparameterization::args' will be initialized after [-Wreorder] const std::vector& args; ^ PathReparameterization.h:41:13: warning: 'PLMD::Direction PLMD::mapping::PathReparameterization::mydir' [-Wreorder] Direction mydir; ^ PathReparameterization.cpp:27:1: warning: when initialized here [-Wreorder] PathReparameterization::PathReparameterization( const Pbc& ipbc, const std::vec ^ PathReparameterization.cpp: In member function 'void PLMD::mapping::PathReparameterization::reparameterizePart(const int&, const int&, const double&, const double&)': PathReparameterization.cpp:71:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=istart; i= iend+1 ) plumed_merror("path reparameterization e ^ PathReparameterization.cpp:103:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if( cfin==(iend+1) && k>=iend ) { k=iend-1; break; } ^ PathReparameterization.cpp:104:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if( cfin==(iend-1) && k<=iend ) { k=iend+1; break; } ^ PathReparameterization.cpp: In member function 'void PLMD::mapping::PathReparameterization::reparameterize(const int&, const int&, const double&)': PathReparameterization.cpp:139:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( ifix2<(mypath.size()-1) ) reparameterizePart( ifix2, mypath.size()-1, tar ^ compiling PathTools.cpp PathTools.cpp: In member function 'virtual int PLMD::mapping::PathTools::main(FILE*, FILE*, PLMD::Communicator&)': PathTools.cpp:255:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0; i&)': TrigonometricPathVessel.cpp:134:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( iclose3<0 || iclose3>=mymap->getFullNumberOfTasks() ) { ^ compiling ZpathVessel.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' make -C ../molfile obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' compiling crdplugin.cpp compiling dcdplugin.cpp In file included from dcdplugin.cpp:83:0: fastio.h: In function 'PLMD::molfile::fio_size_t PLMD::molfile::fio_readv(PLMD::molfile::fio_fd, const fio_iovec*, int)': fastio.h:580:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rc != iov[i].iov_len) ^ dcdplugin.cpp: In function 'int PLMD::molfile::read_dcdheader(PLMD::molfile::fio_fd, int*, int*, int*, int*, double*, int*, int**, float**, int*, int*)': dcdplugin.cpp:226:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { ^ dcdplugin.cpp:239:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { ^ dcdplugin.cpp:257:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (input_integer[0] != dcdcordmagic) { ^ dcdplugin.cpp:434:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { ^ dcdplugin.cpp:451:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { ^ dcdplugin.cpp: In function 'int PLMD::molfile::read_dcdstep(PLMD::molfile::fio_fd, int, float*, float*, float*, float*, int, int, int*, float*, int, int)': dcdplugin.cpp:656:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; ^ dcdplugin.cpp:660:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFOR ^ dcdplugin.cpp:581:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^ In file included from dcdplugin.cpp:83:0: fastio.h: At global scope: fastio.h:520:19: warning: 'PLMD::molfile::fio_size_t PLMD::molfile::fio_readv(PLMD::molfile::fio_fd, const fio_iovec*, int)' defined but not used [-Wunused-function] static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { ^ fastio.h:672:12: warning: 'int PLMD::molfile::fio_read_int32(PLMD::molfile::fio_fd, int*)' defined but not used [-Wunused-function] static int fio_read_int32(fio_fd fd, int *i) { ^ fastio.h:676:12: warning: 'int PLMD::molfile::fio_write_str(PLMD::molfile::fio_fd, const char*)' defined but not used [-Wunused-function] static int fio_write_str(fio_fd fd, const char *str) { ^ In file included from dcdplugin.cpp:92:0: endianswap.h:72:13: warning: 'void PLMD::molfile::swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ endianswap.h:136:13: warning: 'void PLMD::molfile::swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ compiling gromacsplugin.cpp In file included from Gromacs.h:86:0, from gromacsplugin.cpp:62: endianswap.h:72:13: warning: 'void PLMD::molfile::swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ endianswap.h:86:13: warning: 'void PLMD::molfile::swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ endianswap.h:105:13: warning: 'void PLMD::molfile::swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ endianswap.h:136:13: warning: 'void PLMD::molfile::swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ compiling pdbplugin.cpp In file included from pdbplugin.cpp:64:0: periodic_table.h:173:12: warning: 'int PLMD::molfile::get_pte_idx(const char*)' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' make -C ../multicolvar obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' compiling ActionVolume.cpp In file included from ActionVolume.h:26:0, from ActionVolume.cpp:22: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling AlphaBeta.cpp compiling Angles.cpp compiling AtomValuePack.cpp compiling Bridge.cpp compiling BridgedMultiColvarFunction.cpp compiling CatomPack.cpp compiling CenterOfMultiColvar.cpp compiling CoordinationNumbers.cpp compiling Density.cpp compiling DihedralCorrelation.cpp compiling DistanceFromContour.cpp compiling Distances.cpp compiling DumpMultiColvar.cpp compiling FilterBetween.cpp compiling FilterLessThan.cpp compiling FilterMoreThan.cpp compiling InPlaneDistances.cpp compiling LocalAverage.cpp compiling MultiColvarBase.cpp In file included from ActionVolume.h:26:0, from MultiColvarBase.cpp:23: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ MultiColvarBase.cpp: In member function 'void PLMD::multicolvar::MultiColvarBase::setupActiveTaskSet(std::vector&, const string&)': MultiColvarBase.cpp:738:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( atom_lab[itask].first==input_code ) active_tasks[ atom_lab[itask].s ^ compiling MultiColvarCombine.cpp MultiColvarCombine.cpp: In member function 'virtual double PLMD::multicolvar::MultiColvarCombine::compute(const unsigned int&, PLMD::multicolvar::AtomValuePack&) const': MultiColvarCombine.cpp:85:17: warning: unused variable 'myvals' [-Wunused-variable] MultiValue& myvals = myatoms.getUnderlyingMultiValue(); std::vector ^ compiling MultiColvarDensity.cpp compiling MultiColvarFilter.cpp compiling MultiColvarProduct.cpp MultiColvarProduct.cpp: In member function 'virtual double PLMD::multicolvar::MultiColvarProduct::compute(const unsigned int&, PLMD::multicolvar::AtomValuePack&) const': MultiColvarProduct.cpp:78:17: warning: unused variable 'myvals' [-Wunused-variable] MultiValue& myvals = myatoms.getUnderlyingMultiValue(); std::vector ^ compiling NumberOfLinks.cpp compiling Torsions.cpp compiling VolumeAround.cpp In file included from ActionVolume.h:26:0, from VolumeAround.cpp:24: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling VolumeBetweenContours.cpp In file included from ActionVolume.h:26:0, from VolumeBetweenContours.cpp:26: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling VolumeCavity.cpp In file included from ActionVolume.h:26:0, from VolumeCavity.cpp:27: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling VolumeGradientBase.cpp In file included from VolumeGradientBase.cpp:22:0: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling VolumeInCylinder.cpp In file included from ActionVolume.h:26:0, from VolumeInCylinder.cpp:25: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling VolumeInSphere.cpp In file included from ActionVolume.h:26:0, from VolumeInSphere.cpp:25: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling VolumeTetrapore.cpp In file included from ActionVolume.h:26:0, from VolumeTetrapore.cpp:27: VolumeGradientBase.h: In member function 'PLMD::Vector PLMD::multicolvar::VolumeGradientBase::getPosition(int) const': VolumeGradientBase.h:84:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ VolumeGradientBase.h:84:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( bridgeVariable>=3*iatom && bridgeVariable<(iatom+1)*3 ) tmp_p[bridgeVar ^ compiling XAngle.cpp compiling XDistances.cpp compiling XYDistances.cpp compiling XYTorsion.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' make -C ../reference obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' compiling ArgumentOnlyDistance.cpp compiling DRMSD.cpp compiling Direction.cpp compiling DotProductDistance.cpp compiling EuclideanDistance.cpp compiling FakeFrame.cpp compiling IntermolecularDRMSD.cpp compiling IntramolecularDRMSD.cpp compiling MahalanobisDistance.cpp compiling MetricRegister.cpp compiling MultiDomainRMSD.cpp compiling MultiReferenceBase.cpp compiling NormalizedEuclideanDistance.cpp compiling OptimalRMSD.cpp OptimalRMSD.cpp: In member function 'virtual void PLMD::OptimalRMSD::extractAtomicDisplacement(const std::vector >&, std::vector >&) const': OptimalRMSD.cpp:84:10: warning: unused variable 'd' [-Wunused-variable] double d=myrmsd.calc_PCAelements(pos,avector,rot[0],DRotDPos,direction,center ^ compiling PointWiseMapping.cpp compiling RMSDBase.cpp compiling ReferenceArguments.cpp compiling ReferenceAtoms.cpp compiling ReferenceConfiguration.cpp compiling ReferenceValuePack.cpp compiling SimpleRMSD.cpp SimpleRMSD.cpp: In member function 'virtual void PLMD::SimpleRMSD::extractAtomicDisplacement(const std::vector >&, std::vector >&) const': SimpleRMSD.cpp:65:10: warning: unused variable 'd' [-Wunused-variable] double d=myrmsd.simpleAlignment( getAlign(), getDisplace(), pos, getReference ^ compiling SingleDomainRMSD.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' make -C ../secondarystructure obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' compiling AlphaRMSD.cpp compiling AntibetaRMSD.cpp compiling ParabetaRMSD.cpp compiling SecondaryStructureRMSD.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' make -C ../setup obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' compiling Load.cpp compiling MolInfo.cpp compiling Restart.cpp compiling Units.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' make -C ../tools obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' compiling Angle.cpp compiling AtomNumber.cpp compiling BiasRepresentation.cpp compiling Brent1DRootSearch.cpp compiling Citations.cpp compiling Communicator.cpp compiling DLLoader.cpp compiling DynamicList.cpp compiling ERMSD.cpp compiling Exception.cpp compiling FileBase.cpp compiling Grid.cpp compiling HistogramBead.cpp compiling IFile.cpp compiling KernelFunctions.cpp compiling Keywords.cpp compiling LatticeReduction.cpp compiling LinkCells.cpp compiling Log.cpp compiling LoopUnroller.cpp compiling Matrix.cpp compiling MatrixSquareBracketsAccess.cpp compiling Minimise1DBrent.cpp compiling MinimiseBase.cpp compiling MolDataClass.cpp compiling MultiValue.cpp compiling NeighborList.cpp compiling OFile.cpp compiling OpenMP.cpp compiling PDB.cpp PDB.cpp: In function 'const char* PLMD::h36::decode_pure(const int*, unsigned int, const char*, unsigned int, int*)': PDB.cpp:255:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (dv < 0 || dv >= digits_size) { ^ compiling Pbc.cpp compiling RMSD.cpp compiling Random.cpp compiling RootFindingBase.cpp compiling Stopwatch.cpp compiling SwitchingFunction.cpp compiling Tensor.cpp compiling Tools.cpp compiling Torsion.cpp compiling Units.cpp compiling Vector.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' make -C ../vatom obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' compiling ActionWithVirtualAtom.cpp compiling COM.cpp compiling Center.cpp compiling FixedAtom.cpp compiling Ghost.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' make -C ../vesselbase obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' compiling ActionWithAveraging.cpp compiling ActionWithInputVessel.cpp compiling ActionWithVessel.cpp compiling AltMin.cpp compiling AveragingVessel.cpp compiling Between.cpp compiling BridgeVessel.cpp BridgeVessel.cpp: In member function 'virtual void PLMD::vesselbase::BridgeVessel::setBufferStart(unsigned int&)': BridgeVessel.cpp:73:12: warning: unused variable 'tmp' [-Wunused-variable] unsigned tmp=myOutputAction->getSizeOfBuffer( start ); ^ compiling FunctionVessel.cpp compiling Highest.cpp compiling Histogram.cpp compiling LessThan.cpp compiling Lowest.cpp compiling Max.cpp compiling Mean.cpp compiling Min.cpp compiling Moments.cpp compiling MoreThan.cpp compiling OrderingVessel.cpp compiling ShortcutVessel.cpp compiling StoreDataVessel.cpp compiling Sum.cpp compiling ValueVessel.cpp compiling Vessel.cpp compiling VesselRegister.cpp make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' make -C ../wrapper obj make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' compiling PlumedStatic.cpp compiling Plumed.c make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' make[5]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[4]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make lib-static make[4]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' /home/apps/ics/impi/latest/bin64/mpicxx ../main/main.o ../analysis/Analysis.o ../analysis/AnalysisWithLandmarks.o ../analysis/Average.o ../analysis/AverageVessel.o ../analysis/ClassicalMultiDimensionalScaling.o ../analysis/ClassicalScaling.o ../analysis/Committor.o ../analysis/Histogram.o ../analysis/LandmarkRegister.o ../analysis/LandmarkSelectionBase.o ../analysis/PCA.o ../analysis/SelectAllFrames.o ../bias/ABMD.o ../bias/Bias.o ../bias/BiasValue.o ../bias/ExtendedLagrangian.o ../bias/External.o ../bias/LWalls.o ../bias/MaxEnt.o ../bias/MetaD.o ../bias/MovingRestraint.o ../bias/PBMetaD.o ../bias/Restraint.o ../bias/ReweightBase.o ../bias/ReweightBias.o ../bias/ReweightMetad.o ../bias/ReweightTemperature.o ../bias/UWalls.o ../blas/blas.o ../cltools/CLTool.o ../cltools/Driver.o ../cltools/DriverDouble.o ../cltools/DriverFloat.o ../cltools/GenTemplate.o ../cltools/Info.o ../cltools/Manual.o ../cltools/SimpleMD.o ../cltools/SumHills.o ../cltools/kT.o ../cltools/pesmd.o ../colvar/Angle.o ../colvar/Cell.o ../colvar/Colvar.o ../colvar/Constant.o ../colvar/ContactMap.o ../colvar/Coordination.o ../colvar/CoordinationBase.o ../colvar/DHEnergy.o ../colvar/DRMSD.o ../colvar/Dimer.o ../colvar/Dipole.o ../colvar/Distance.o ../colvar/EEFSolv.o ../colvar/ERMSD.o ../colvar/Energy.o ../colvar/Fake.o ../colvar/Gyration.o ../colvar/MultiRMSD.o ../colvar/PCARMSD.o ../colvar/PathMSD.o ../colvar/PathMSDBase.o ../colvar/Position.o ../colvar/PropertyMap.o ../colvar/Puckering.o ../colvar/RMSD.o ../colvar/Template.o ../colvar/Torsion.o ../colvar/Volume.o ../core/Action.o ../core/ActionAtomistic.o ../core/ActionPilot.o ../core/ActionRegister.o ../core/ActionSet.o ../core/ActionSetup.o ../core/ActionWithArguments.o ../core/ActionWithValue.o ../core/ActionWithVirtualAtom.o ../core/Atoms.o ../core/CLTool.o ../core/CLToolMain.o ../core/CLToolRegister.o ../core/Colvar.o ../core/ExchangePatterns.o ../core/FlexibleBin.o ../core/GREX.o ../core/MDAtoms.o ../core/PlumedMain.o ../core/PlumedMainInitializer.o ../core/SetupMolInfo.o ../core/TargetDist.o ../core/Value.o ../core/WithCmd.o ../function/Combine.o ../function/Ensemble.o ../function/FuncPathMSD.o ../function/FuncSumHills.o ../function/Function.o ../function/LocalEnsemble.o ../function/Matheval.o ../function/Piecewise.o ../function/Sort.o ../function/Stats.o ../function/Target.o ../generic/Debug.o ../generic/DumpAtoms.o ../generic/DumpDerivatives.o ../generic/DumpForces.o ../generic/DumpMassCharge.o ../generic/DumpProjections.o ../generic/EffectiveEnergyDrift.o ../generic/EndPlumed.o ../generic/FitToTemplate.o ../generic/Flush.o ../generic/Group.o ../generic/Include.o ../generic/Print.o ../generic/RandomExchanges.o ../generic/Read.o ../generic/ResetCell.o ../generic/Time.o ../generic/UpdateIf.o ../generic/WholeMolecules.o ../generic/WrapAround.o ../gridtools/ActionWithGrid.o ../gridtools/ActionWithInputGrid.o ../gridtools/ActionWithIntegral.o ../gridtools/AverageOnGrid.o ../gridtools/ContourFindingBase.o ../gridtools/ConvertToFES.o ../gridtools/DumpCube.o ../gridtools/DumpGrid.o ../gridtools/FindContour.o ../gridtools/FindContourSurface.o ../gridtools/FindSphericalContour.o ../gridtools/FourierTransform.o ../gridtools/GridPrintingBase.o ../gridtools/GridToXYZ.o ../gridtools/GridVessel.o ../gridtools/HistogramOnGrid.o ../gridtools/IntegrateGrid.o ../gridtools/InterpolateGrid.o ../isdb/CS2Backbone.o ../isdb/EMMI.o ../isdb/FretEfficiency.o ../isdb/Jcoupling.o ../isdb/Metainference.o ../isdb/MetainferenceBase.o ../isdb/NOE.o ../isdb/PRE.o ../isdb/RDC.o ../isdb/Rescale.o ../isdb/SAXS.o ../isdb/Select.o ../isdb/Selector.o ../lapack/lapack.o ../lepton/CompiledExpression.o ../lepton/ExpressionProgram.o ../lepton/ExpressionTreeNode.o ../lepton/Operation.o ../lepton/ParsedExpression.o ../lepton/Parser.o ../mapping/AdaptivePath.o ../mapping/Mapping.o ../mapping/PCAVars.o ../mapping/Path.o ../mapping/PathBase.o ../mapping/PathReparameterization.o ../mapping/PathTools.o ../mapping/PropertyMap.o ../mapping/SpathVessel.o ../mapping/TrigonometricPathVessel.o ../mapping/ZpathVessel.o ../molfile/crdplugin.o ../molfile/dcdplugin.o ../molfile/gromacsplugin.o ../molfile/pdbplugin.o ../multicolvar/ActionVolume.o ../multicolvar/AlphaBeta.o ../multicolvar/Angles.o ../multicolvar/AtomValuePack.o ../multicolvar/Bridge.o ../multicolvar/BridgedMultiColvarFunction.o ../multicolvar/CatomPack.o ../multicolvar/CenterOfMultiColvar.o ../multicolvar/CoordinationNumbers.o ../multicolvar/Density.o ../multicolvar/DihedralCorrelation.o ../multicolvar/DistanceFromContour.o ../multicolvar/Distances.o ../multicolvar/DumpMultiColvar.o ../multicolvar/FilterBetween.o ../multicolvar/FilterLessThan.o ../multicolvar/FilterMoreThan.o ../multicolvar/InPlaneDistances.o ../multicolvar/LocalAverage.o ../multicolvar/MultiColvarBase.o ../multicolvar/MultiColvarCombine.o ../multicolvar/MultiColvarDensity.o ../multicolvar/MultiColvarFilter.o ../multicolvar/MultiColvarProduct.o ../multicolvar/NumberOfLinks.o ../multicolvar/Torsions.o ../multicolvar/VolumeAround.o ../multicolvar/VolumeBetweenContours.o ../multicolvar/VolumeCavity.o ../multicolvar/VolumeGradientBase.o ../multicolvar/VolumeInCylinder.o ../multicolvar/VolumeInSphere.o ../multicolvar/VolumeTetrapore.o ../multicolvar/XAngle.o ../multicolvar/XDistances.o ../multicolvar/XYDistances.o ../multicolvar/XYTorsion.o ../reference/ArgumentOnlyDistance.o ../reference/DRMSD.o ../reference/Direction.o ../reference/DotProductDistance.o ../reference/EuclideanDistance.o ../reference/FakeFrame.o ../reference/IntermolecularDRMSD.o ../reference/IntramolecularDRMSD.o ../reference/MahalanobisDistance.o ../reference/MetricRegister.o ../reference/MultiDomainRMSD.o ../reference/MultiReferenceBase.o ../reference/NormalizedEuclideanDistance.o ../reference/OptimalRMSD.o ../reference/PointWiseMapping.o ../reference/RMSDBase.o ../reference/ReferenceArguments.o ../reference/ReferenceAtoms.o ../reference/ReferenceConfiguration.o ../reference/ReferenceValuePack.o ../reference/SimpleRMSD.o ../reference/SingleDomainRMSD.o ../secondarystructure/AlphaRMSD.o ../secondarystructure/AntibetaRMSD.o ../secondarystructure/ParabetaRMSD.o ../secondarystructure/SecondaryStructureRMSD.o ../setup/Load.o ../setup/MolInfo.o ../setup/Restart.o ../setup/Units.o ../tools/Angle.o ../tools/AtomNumber.o ../tools/BiasRepresentation.o ../tools/Brent1DRootSearch.o ../tools/Citations.o ../tools/Communicator.o ../tools/DLLoader.o ../tools/DynamicList.o ../tools/ERMSD.o ../tools/Exception.o ../tools/FileBase.o ../tools/Grid.o ../tools/HistogramBead.o ../tools/IFile.o ../tools/KernelFunctions.o ../tools/Keywords.o ../tools/LatticeReduction.o ../tools/LinkCells.o ../tools/Log.o ../tools/LoopUnroller.o ../tools/Matrix.o ../tools/MatrixSquareBracketsAccess.o ../tools/Minimise1DBrent.o ../tools/MinimiseBase.o ../tools/MolDataClass.o ../tools/MultiValue.o ../tools/NeighborList.o ../tools/OFile.o ../tools/OpenMP.o ../tools/PDB.o ../tools/Pbc.o ../tools/RMSD.o ../tools/Random.o ../tools/RootFindingBase.o ../tools/Stopwatch.o ../tools/SwitchingFunction.o ../tools/Tensor.o ../tools/Tools.o ../tools/Torsion.o ../tools/Units.o ../tools/Vector.o ../vatom/ActionWithVirtualAtom.o ../vatom/COM.o ../vatom/Center.o ../vatom/FixedAtom.o ../vatom/Ghost.o ../vesselbase/ActionWithAveraging.o ../vesselbase/ActionWithInputVessel.o ../vesselbase/ActionWithVessel.o ../vesselbase/AltMin.o ../vesselbase/AveragingVessel.o ../vesselbase/Between.o ../vesselbase/BridgeVessel.o ../vesselbase/FunctionVessel.o ../vesselbase/Highest.o ../vesselbase/Histogram.o ../vesselbase/LessThan.o ../vesselbase/Lowest.o ../vesselbase/Max.o ../vesselbase/Mean.o ../vesselbase/Min.o ../vesselbase/Moments.o ../vesselbase/MoreThan.o ../vesselbase/OrderingVessel.o ../vesselbase/ShortcutVessel.o ../vesselbase/StoreDataVessel.o ../vesselbase/Sum.o ../vesselbase/ValueVessel.o ../vesselbase/Vessel.o ../vesselbase/VesselRegister.o ../config/Config.o ../wrapper/PlumedStatic.o -o plumed -ldl -lstdc++ -lxdrfile -lgsl -lgslcblas -lz -lmatheval -ldl -llapack -lblas -L/home/acusers/pbalaji/install/lapack-3.8.0/lib64/ -L/home/acusers/pbalaji/install/xdrfile/lib/ -L/home/apps/ics/impi/latest/lib64/ -L/home/acusers/pbalaji/install/libmatheval/lib/ -lmpi_mt -rdynamic -fopenmp Building Plumed.inc Building Plumed.inc, static version Building Plumed.cmake Building Plumed.cmake, static version chmod a+x plumed-config chmod a+x plumed-mklib chmod a+x plumed-newcv chmod a+x plumed-partial_tempering chmod a+x plumed-patch chmod a+x plumed-vim2html make[4]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make install-build make[4]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' mkdir -p install/ make PLUMED_INSTALL=Install all make[5]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make dirslinks make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' *** Updating links to used modules in all directories *** make ../analysis.links ../bias.links ../blas.links ../cltools.links ../colvar.links ../config.links ../core.links ../function.links ../generic.links ../gridtools.links ../isdb.links ../lapack.links ../lepton.links ../main.links ../mapping.links ../molfile.links ../multicolvar.links ../reference.links ../secondarystructure.links ../setup.links ../tools.links ../vatom.links ../vesselbase.links ../wrapper.links make[7]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make -C ../analysis links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/analysis make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' make -C ../bias links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/bias make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' make -C ../blas links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/blas make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' make -C ../cltools links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/cltools make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' make -C ../colvar links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/colvar' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/colvar make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/colvar' make -C ../config links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' Nothing to do in /home/acusers/pbalaji/install/plumed-2.4.1/src/config make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make -C ../core links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/core make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' make -C ../function links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/function make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' make -C ../generic links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/generic' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/generic make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/generic' make -C ../gridtools links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools' make -C ../isdb links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/isdb make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' make -C ../lapack links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/lapack make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' make -C ../lepton links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/lepton make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' make -C ../main links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/main make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' make -C ../mapping links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/mapping make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' make -C ../molfile links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/molfile make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' make -C ../multicolvar links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' make -C ../reference links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/reference make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' make -C ../secondarystructure links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' make -C ../setup links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/setup make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' make -C ../tools links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/tools make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' make -C ../vatom links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/vatom make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' make -C ../vesselbase links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' Verify modules and create links in /home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' make -C ../wrapper links make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' Nothing to do in /home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' make[7]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make dirs make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' *** Compiling all directories *** make ../analysis ../bias ../blas ../cltools ../colvar ../config ../core ../function ../generic ../gridtools ../isdb ../lapack ../lepton ../main ../mapping ../molfile ../multicolvar ../reference ../secondarystructure ../setup ../tools ../vatom ../vesselbase ../wrapper make[7]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make -C ../analysis obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/analysis' make -C ../bias obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/bias' make -C ../blas obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/blas' make -C ../cltools obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/cltools' make -C ../colvar obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/colvar' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/colvar' make -C ../config obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make PLUMED_FORCE=yes ConfigInstall.inc Config.inc version.h config.txt make[9]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' Updating ConfigInstall.inc cmp -s ConfigInstall.inc~ ConfigInstall.inc || cp ConfigInstall.inc~ ConfigInstall.inc rm ConfigInstall.inc~ Updating Config.inc cmp -s Config.inc~ Config.inc || cp Config.inc~ Config.inc rm Config.inc~ Updating version.h make[9]: `config.txt' is up to date. make[9]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make Config.o ConfigInstall.o compile_options.sh make[9]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make[9]: `Config.o' is up to date. make[9]: `ConfigInstall.o' is up to date. make[9]: `compile_options.sh' is up to date. make[9]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/config' make -C ../core obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/core' make -C ../function obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/function' make -C ../generic obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/generic' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/generic' make -C ../gridtools obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/gridtools' make -C ../isdb obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/isdb' make -C ../lapack obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lapack' make -C ../lepton obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lepton' make -C ../main obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/main' make -C ../mapping obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/mapping' make -C ../molfile obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/molfile' make -C ../multicolvar obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/multicolvar' make -C ../reference obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/reference' make -C ../secondarystructure obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/secondarystructure' make -C ../setup obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/setup' make -C ../tools obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/tools' make -C ../vatom obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vatom' make -C ../vesselbase obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/vesselbase' make -C ../wrapper obj make[8]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' make[8]: Nothing to be done for `obj'. make[8]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/wrapper' make[7]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make lib-static make[6]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' /home/apps/ics/impi/latest/bin64/mpicxx ../main/main.o ../analysis/Analysis.o ../analysis/AnalysisWithLandmarks.o ../analysis/Average.o ../analysis/AverageVessel.o ../analysis/ClassicalMultiDimensionalScaling.o ../analysis/ClassicalScaling.o ../analysis/Committor.o ../analysis/Histogram.o ../analysis/LandmarkRegister.o ../analysis/LandmarkSelectionBase.o ../analysis/PCA.o ../analysis/SelectAllFrames.o ../bias/ABMD.o ../bias/Bias.o ../bias/BiasValue.o ../bias/ExtendedLagrangian.o ../bias/External.o ../bias/LWalls.o ../bias/MaxEnt.o ../bias/MetaD.o ../bias/MovingRestraint.o ../bias/PBMetaD.o ../bias/Restraint.o ../bias/ReweightBase.o ../bias/ReweightBias.o ../bias/ReweightMetad.o ../bias/ReweightTemperature.o ../bias/UWalls.o ../blas/blas.o ../cltools/CLTool.o ../cltools/Driver.o ../cltools/DriverDouble.o ../cltools/DriverFloat.o ../cltools/GenTemplate.o ../cltools/Info.o ../cltools/Manual.o ../cltools/SimpleMD.o ../cltools/SumHills.o ../cltools/kT.o ../cltools/pesmd.o ../colvar/Angle.o ../colvar/Cell.o ../colvar/Colvar.o ../colvar/Constant.o ../colvar/ContactMap.o ../colvar/Coordination.o ../colvar/CoordinationBase.o ../colvar/DHEnergy.o ../colvar/DRMSD.o ../colvar/Dimer.o ../colvar/Dipole.o ../colvar/Distance.o ../colvar/EEFSolv.o ../colvar/ERMSD.o ../colvar/Energy.o ../colvar/Fake.o ../colvar/Gyration.o ../colvar/MultiRMSD.o ../colvar/PCARMSD.o ../colvar/PathMSD.o ../colvar/PathMSDBase.o ../colvar/Position.o ../colvar/PropertyMap.o ../colvar/Puckering.o ../colvar/RMSD.o ../colvar/Template.o ../colvar/Torsion.o ../colvar/Volume.o ../core/Action.o ../core/ActionAtomistic.o ../core/ActionPilot.o ../core/ActionRegister.o ../core/ActionSet.o ../core/ActionSetup.o ../core/ActionWithArguments.o ../core/ActionWithValue.o ../core/ActionWithVirtualAtom.o ../core/Atoms.o ../core/CLTool.o ../core/CLToolMain.o ../core/CLToolRegister.o ../core/Colvar.o ../core/ExchangePatterns.o ../core/FlexibleBin.o ../core/GREX.o ../core/MDAtoms.o ../core/PlumedMain.o ../core/PlumedMainInitializer.o ../core/SetupMolInfo.o ../core/TargetDist.o ../core/Value.o ../core/WithCmd.o ../function/Combine.o ../function/Ensemble.o ../function/FuncPathMSD.o ../function/FuncSumHills.o ../function/Function.o ../function/LocalEnsemble.o ../function/Matheval.o ../function/Piecewise.o ../function/Sort.o ../function/Stats.o ../function/Target.o ../generic/Debug.o ../generic/DumpAtoms.o ../generic/DumpDerivatives.o ../generic/DumpForces.o ../generic/DumpMassCharge.o ../generic/DumpProjections.o ../generic/EffectiveEnergyDrift.o ../generic/EndPlumed.o ../generic/FitToTemplate.o ../generic/Flush.o ../generic/Group.o ../generic/Include.o ../generic/Print.o ../generic/RandomExchanges.o ../generic/Read.o ../generic/ResetCell.o ../generic/Time.o ../generic/UpdateIf.o ../generic/WholeMolecules.o ../generic/WrapAround.o ../gridtools/ActionWithGrid.o ../gridtools/ActionWithInputGrid.o ../gridtools/ActionWithIntegral.o ../gridtools/AverageOnGrid.o ../gridtools/ContourFindingBase.o ../gridtools/ConvertToFES.o ../gridtools/DumpCube.o ../gridtools/DumpGrid.o ../gridtools/FindContour.o ../gridtools/FindContourSurface.o ../gridtools/FindSphericalContour.o ../gridtools/FourierTransform.o ../gridtools/GridPrintingBase.o ../gridtools/GridToXYZ.o ../gridtools/GridVessel.o ../gridtools/HistogramOnGrid.o ../gridtools/IntegrateGrid.o ../gridtools/InterpolateGrid.o ../isdb/CS2Backbone.o ../isdb/EMMI.o ../isdb/FretEfficiency.o ../isdb/Jcoupling.o ../isdb/Metainference.o ../isdb/MetainferenceBase.o ../isdb/NOE.o ../isdb/PRE.o ../isdb/RDC.o ../isdb/Rescale.o ../isdb/SAXS.o ../isdb/Select.o ../isdb/Selector.o ../lapack/lapack.o ../lepton/CompiledExpression.o ../lepton/ExpressionProgram.o ../lepton/ExpressionTreeNode.o ../lepton/Operation.o ../lepton/ParsedExpression.o ../lepton/Parser.o ../mapping/AdaptivePath.o ../mapping/Mapping.o ../mapping/PCAVars.o ../mapping/Path.o ../mapping/PathBase.o ../mapping/PathReparameterization.o ../mapping/PathTools.o ../mapping/PropertyMap.o ../mapping/SpathVessel.o ../mapping/TrigonometricPathVessel.o ../mapping/ZpathVessel.o ../molfile/crdplugin.o ../molfile/dcdplugin.o ../molfile/gromacsplugin.o ../molfile/pdbplugin.o ../multicolvar/ActionVolume.o ../multicolvar/AlphaBeta.o ../multicolvar/Angles.o ../multicolvar/AtomValuePack.o ../multicolvar/Bridge.o ../multicolvar/BridgedMultiColvarFunction.o ../multicolvar/CatomPack.o ../multicolvar/CenterOfMultiColvar.o ../multicolvar/CoordinationNumbers.o ../multicolvar/Density.o ../multicolvar/DihedralCorrelation.o ../multicolvar/DistanceFromContour.o ../multicolvar/Distances.o ../multicolvar/DumpMultiColvar.o ../multicolvar/FilterBetween.o ../multicolvar/FilterLessThan.o ../multicolvar/FilterMoreThan.o ../multicolvar/InPlaneDistances.o ../multicolvar/LocalAverage.o ../multicolvar/MultiColvarBase.o ../multicolvar/MultiColvarCombine.o ../multicolvar/MultiColvarDensity.o ../multicolvar/MultiColvarFilter.o ../multicolvar/MultiColvarProduct.o ../multicolvar/NumberOfLinks.o ../multicolvar/Torsions.o ../multicolvar/VolumeAround.o ../multicolvar/VolumeBetweenContours.o ../multicolvar/VolumeCavity.o ../multicolvar/VolumeGradientBase.o ../multicolvar/VolumeInCylinder.o ../multicolvar/VolumeInSphere.o ../multicolvar/VolumeTetrapore.o ../multicolvar/XAngle.o ../multicolvar/XDistances.o ../multicolvar/XYDistances.o ../multicolvar/XYTorsion.o ../reference/ArgumentOnlyDistance.o ../reference/DRMSD.o ../reference/Direction.o ../reference/DotProductDistance.o ../reference/EuclideanDistance.o ../reference/FakeFrame.o ../reference/IntermolecularDRMSD.o ../reference/IntramolecularDRMSD.o ../reference/MahalanobisDistance.o ../reference/MetricRegister.o ../reference/MultiDomainRMSD.o ../reference/MultiReferenceBase.o ../reference/NormalizedEuclideanDistance.o ../reference/OptimalRMSD.o ../reference/PointWiseMapping.o ../reference/RMSDBase.o ../reference/ReferenceArguments.o ../reference/ReferenceAtoms.o ../reference/ReferenceConfiguration.o ../reference/ReferenceValuePack.o ../reference/SimpleRMSD.o ../reference/SingleDomainRMSD.o ../secondarystructure/AlphaRMSD.o ../secondarystructure/AntibetaRMSD.o ../secondarystructure/ParabetaRMSD.o ../secondarystructure/SecondaryStructureRMSD.o ../setup/Load.o ../setup/MolInfo.o ../setup/Restart.o ../setup/Units.o ../tools/Angle.o ../tools/AtomNumber.o ../tools/BiasRepresentation.o ../tools/Brent1DRootSearch.o ../tools/Citations.o ../tools/Communicator.o ../tools/DLLoader.o ../tools/DynamicList.o ../tools/ERMSD.o ../tools/Exception.o ../tools/FileBase.o ../tools/Grid.o ../tools/HistogramBead.o ../tools/IFile.o ../tools/KernelFunctions.o ../tools/Keywords.o ../tools/LatticeReduction.o ../tools/LinkCells.o ../tools/Log.o ../tools/LoopUnroller.o ../tools/Matrix.o ../tools/MatrixSquareBracketsAccess.o ../tools/Minimise1DBrent.o ../tools/MinimiseBase.o ../tools/MolDataClass.o ../tools/MultiValue.o ../tools/NeighborList.o ../tools/OFile.o ../tools/OpenMP.o ../tools/PDB.o ../tools/Pbc.o ../tools/RMSD.o ../tools/Random.o ../tools/RootFindingBase.o ../tools/Stopwatch.o ../tools/SwitchingFunction.o ../tools/Tensor.o ../tools/Tools.o ../tools/Torsion.o ../tools/Units.o ../tools/Vector.o ../vatom/ActionWithVirtualAtom.o ../vatom/COM.o ../vatom/Center.o ../vatom/FixedAtom.o ../vatom/Ghost.o ../vesselbase/ActionWithAveraging.o ../vesselbase/ActionWithInputVessel.o ../vesselbase/ActionWithVessel.o ../vesselbase/AltMin.o ../vesselbase/AveragingVessel.o ../vesselbase/Between.o ../vesselbase/BridgeVessel.o ../vesselbase/FunctionVessel.o ../vesselbase/Highest.o ../vesselbase/Histogram.o ../vesselbase/LessThan.o ../vesselbase/Lowest.o ../vesselbase/Max.o ../vesselbase/Mean.o ../vesselbase/Min.o ../vesselbase/Moments.o ../vesselbase/MoreThan.o ../vesselbase/OrderingVessel.o ../vesselbase/ShortcutVessel.o ../vesselbase/StoreDataVessel.o ../vesselbase/Sum.o ../vesselbase/ValueVessel.o ../vesselbase/Vessel.o ../vesselbase/VesselRegister.o ../config/ConfigInstall.o ../wrapper/PlumedStatic.o -o install/plumed -ldl -lstdc++ -lxdrfile -lgsl -lgslcblas -lz -lmatheval -ldl -llapack -lblas -L/home/acusers/pbalaji/install/lapack-3.8.0/lib64/ -L/home/acusers/pbalaji/install/xdrfile/lib/ -L/home/apps/ics/impi/latest/lib64/ -L/home/acusers/pbalaji/install/libmatheval/lib/ -lmpi_mt -rdynamic -fopenmp Building Plumed.inc Building Plumed.inc, static version Building Plumed.cmake Building Plumed.cmake, static version chmod a+x install/plumed-config chmod a+x install/plumed-mklib chmod a+x install/plumed-newcv chmod a+x install/plumed-partial_tempering chmod a+x install/plumed-patch chmod a+x install/plumed-vim2html make[6]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[5]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make PLUMED_INSTALL=Install install/kernel.o make[5]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' ld -r -o install/kernel.o ../analysis/Analysis.o ../analysis/AnalysisWithLandmarks.o ../analysis/Average.o ../analysis/AverageVessel.o ../analysis/ClassicalMultiDimensionalScaling.o ../analysis/ClassicalScaling.o ../analysis/Committor.o ../analysis/Histogram.o ../analysis/LandmarkRegister.o ../analysis/LandmarkSelectionBase.o ../analysis/PCA.o ../analysis/SelectAllFrames.o ../bias/ABMD.o ../bias/Bias.o ../bias/BiasValue.o ../bias/ExtendedLagrangian.o ../bias/External.o ../bias/LWalls.o ../bias/MaxEnt.o ../bias/MetaD.o ../bias/MovingRestraint.o ../bias/PBMetaD.o ../bias/Restraint.o ../bias/ReweightBase.o ../bias/ReweightBias.o ../bias/ReweightMetad.o ../bias/ReweightTemperature.o ../bias/UWalls.o ../blas/blas.o ../cltools/CLTool.o ../cltools/Driver.o ../cltools/DriverDouble.o ../cltools/DriverFloat.o ../cltools/GenTemplate.o ../cltools/Info.o ../cltools/Manual.o ../cltools/SimpleMD.o ../cltools/SumHills.o ../cltools/kT.o ../cltools/pesmd.o ../colvar/Angle.o ../colvar/Cell.o ../colvar/Colvar.o ../colvar/Constant.o ../colvar/ContactMap.o ../colvar/Coordination.o ../colvar/CoordinationBase.o ../colvar/DHEnergy.o ../colvar/DRMSD.o ../colvar/Dimer.o ../colvar/Dipole.o ../colvar/Distance.o ../colvar/EEFSolv.o ../colvar/ERMSD.o ../colvar/Energy.o ../colvar/Fake.o ../colvar/Gyration.o ../colvar/MultiRMSD.o ../colvar/PCARMSD.o ../colvar/PathMSD.o ../colvar/PathMSDBase.o ../colvar/Position.o ../colvar/PropertyMap.o ../colvar/Puckering.o ../colvar/RMSD.o ../colvar/Template.o ../colvar/Torsion.o ../colvar/Volume.o ../core/Action.o ../core/ActionAtomistic.o ../core/ActionPilot.o ../core/ActionRegister.o ../core/ActionSet.o ../core/ActionSetup.o ../core/ActionWithArguments.o ../core/ActionWithValue.o ../core/ActionWithVirtualAtom.o ../core/Atoms.o ../core/CLTool.o ../core/CLToolMain.o ../core/CLToolRegister.o ../core/Colvar.o ../core/ExchangePatterns.o ../core/FlexibleBin.o ../core/GREX.o ../core/MDAtoms.o ../core/PlumedMain.o ../core/PlumedMainInitializer.o ../core/SetupMolInfo.o ../core/TargetDist.o ../core/Value.o ../core/WithCmd.o ../function/Combine.o ../function/Ensemble.o ../function/FuncPathMSD.o ../function/FuncSumHills.o ../function/Function.o ../function/LocalEnsemble.o ../function/Matheval.o ../function/Piecewise.o ../function/Sort.o ../function/Stats.o ../function/Target.o ../generic/Debug.o ../generic/DumpAtoms.o ../generic/DumpDerivatives.o ../generic/DumpForces.o ../generic/DumpMassCharge.o ../generic/DumpProjections.o ../generic/EffectiveEnergyDrift.o ../generic/EndPlumed.o ../generic/FitToTemplate.o ../generic/Flush.o ../generic/Group.o ../generic/Include.o ../generic/Print.o ../generic/RandomExchanges.o ../generic/Read.o ../generic/ResetCell.o ../generic/Time.o ../generic/UpdateIf.o ../generic/WholeMolecules.o ../generic/WrapAround.o ../gridtools/ActionWithGrid.o ../gridtools/ActionWithInputGrid.o ../gridtools/ActionWithIntegral.o ../gridtools/AverageOnGrid.o ../gridtools/ContourFindingBase.o ../gridtools/ConvertToFES.o ../gridtools/DumpCube.o ../gridtools/DumpGrid.o ../gridtools/FindContour.o ../gridtools/FindContourSurface.o ../gridtools/FindSphericalContour.o ../gridtools/FourierTransform.o ../gridtools/GridPrintingBase.o ../gridtools/GridToXYZ.o ../gridtools/GridVessel.o ../gridtools/HistogramOnGrid.o ../gridtools/IntegrateGrid.o ../gridtools/InterpolateGrid.o ../isdb/CS2Backbone.o ../isdb/EMMI.o ../isdb/FretEfficiency.o ../isdb/Jcoupling.o ../isdb/Metainference.o ../isdb/MetainferenceBase.o ../isdb/NOE.o ../isdb/PRE.o ../isdb/RDC.o ../isdb/Rescale.o ../isdb/SAXS.o ../isdb/Select.o ../isdb/Selector.o ../lapack/lapack.o ../lepton/CompiledExpression.o ../lepton/ExpressionProgram.o ../lepton/ExpressionTreeNode.o ../lepton/Operation.o ../lepton/ParsedExpression.o ../lepton/Parser.o ../mapping/AdaptivePath.o ../mapping/Mapping.o ../mapping/PCAVars.o ../mapping/Path.o ../mapping/PathBase.o ../mapping/PathReparameterization.o ../mapping/PathTools.o ../mapping/PropertyMap.o ../mapping/SpathVessel.o ../mapping/TrigonometricPathVessel.o ../mapping/ZpathVessel.o ../molfile/crdplugin.o ../molfile/dcdplugin.o ../molfile/gromacsplugin.o ../molfile/pdbplugin.o ../multicolvar/ActionVolume.o ../multicolvar/AlphaBeta.o ../multicolvar/Angles.o ../multicolvar/AtomValuePack.o ../multicolvar/Bridge.o ../multicolvar/BridgedMultiColvarFunction.o ../multicolvar/CatomPack.o ../multicolvar/CenterOfMultiColvar.o ../multicolvar/CoordinationNumbers.o ../multicolvar/Density.o ../multicolvar/DihedralCorrelation.o ../multicolvar/DistanceFromContour.o ../multicolvar/Distances.o ../multicolvar/DumpMultiColvar.o ../multicolvar/FilterBetween.o ../multicolvar/FilterLessThan.o ../multicolvar/FilterMoreThan.o ../multicolvar/InPlaneDistances.o ../multicolvar/LocalAverage.o ../multicolvar/MultiColvarBase.o ../multicolvar/MultiColvarCombine.o ../multicolvar/MultiColvarDensity.o ../multicolvar/MultiColvarFilter.o ../multicolvar/MultiColvarProduct.o ../multicolvar/NumberOfLinks.o ../multicolvar/Torsions.o ../multicolvar/VolumeAround.o ../multicolvar/VolumeBetweenContours.o ../multicolvar/VolumeCavity.o ../multicolvar/VolumeGradientBase.o ../multicolvar/VolumeInCylinder.o ../multicolvar/VolumeInSphere.o ../multicolvar/VolumeTetrapore.o ../multicolvar/XAngle.o ../multicolvar/XDistances.o ../multicolvar/XYDistances.o ../multicolvar/XYTorsion.o ../reference/ArgumentOnlyDistance.o ../reference/DRMSD.o ../reference/Direction.o ../reference/DotProductDistance.o ../reference/EuclideanDistance.o ../reference/FakeFrame.o ../reference/IntermolecularDRMSD.o ../reference/IntramolecularDRMSD.o ../reference/MahalanobisDistance.o ../reference/MetricRegister.o ../reference/MultiDomainRMSD.o ../reference/MultiReferenceBase.o ../reference/NormalizedEuclideanDistance.o ../reference/OptimalRMSD.o ../reference/PointWiseMapping.o ../reference/RMSDBase.o ../reference/ReferenceArguments.o ../reference/ReferenceAtoms.o ../reference/ReferenceConfiguration.o ../reference/ReferenceValuePack.o ../reference/SimpleRMSD.o ../reference/SingleDomainRMSD.o ../secondarystructure/AlphaRMSD.o ../secondarystructure/AntibetaRMSD.o ../secondarystructure/ParabetaRMSD.o ../secondarystructure/SecondaryStructureRMSD.o ../setup/Load.o ../setup/MolInfo.o ../setup/Restart.o ../setup/Units.o ../tools/Angle.o ../tools/AtomNumber.o ../tools/BiasRepresentation.o ../tools/Brent1DRootSearch.o ../tools/Citations.o ../tools/Communicator.o ../tools/DLLoader.o ../tools/DynamicList.o ../tools/ERMSD.o ../tools/Exception.o ../tools/FileBase.o ../tools/Grid.o ../tools/HistogramBead.o ../tools/IFile.o ../tools/KernelFunctions.o ../tools/Keywords.o ../tools/LatticeReduction.o ../tools/LinkCells.o ../tools/Log.o ../tools/LoopUnroller.o ../tools/Matrix.o ../tools/MatrixSquareBracketsAccess.o ../tools/Minimise1DBrent.o ../tools/MinimiseBase.o ../tools/MolDataClass.o ../tools/MultiValue.o ../tools/NeighborList.o ../tools/OFile.o ../tools/OpenMP.o ../tools/PDB.o ../tools/Pbc.o ../tools/RMSD.o ../tools/Random.o ../tools/RootFindingBase.o ../tools/Stopwatch.o ../tools/SwitchingFunction.o ../tools/Tensor.o ../tools/Tools.o ../tools/Torsion.o ../tools/Units.o ../tools/Vector.o ../vatom/ActionWithVirtualAtom.o ../vatom/COM.o ../vatom/Center.o ../vatom/FixedAtom.o ../vatom/Ghost.o ../vesselbase/ActionWithAveraging.o ../vesselbase/ActionWithInputVessel.o ../vesselbase/ActionWithVessel.o ../vesselbase/AltMin.o ../vesselbase/AveragingVessel.o ../vesselbase/Between.o ../vesselbase/BridgeVessel.o ../vesselbase/FunctionVessel.o ../vesselbase/Highest.o ../vesselbase/Histogram.o ../vesselbase/LessThan.o ../vesselbase/Lowest.o ../vesselbase/Max.o ../vesselbase/Mean.o ../vesselbase/Min.o ../vesselbase/Moments.o ../vesselbase/MoreThan.o ../vesselbase/OrderingVessel.o ../vesselbase/ShortcutVessel.o ../vesselbase/StoreDataVessel.o ../vesselbase/Sum.o ../vesselbase/ValueVessel.o ../vesselbase/Vessel.o ../vesselbase/VesselRegister.o ../config/ConfigInstall.o make[5]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[4]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[3]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src/lib' make[2]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/src' make[1]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1' make -C vim make[1]: Entering directory `/home/acusers/pbalaji/install/plumed-2.4.1/vim' ./vimsyntax.sh make[1]: Leaving directory `/home/acusers/pbalaji/install/plumed-2.4.1/vim'