PLINK v1.90b7 64-bit (16 Jan 2023)             www.cog-genomics.org/plink/1.9/
(C) 2005-2023 Shaun Purcell, Christopher Chang   GNU General Public License v3
Logging to twas_snp_chr1.log.
Options in effect:
  --make-bed
  --out twas_snp_chr1
  --vcf twas_snp_chr1.vcf

515522 MB RAM detected; reserving 257761 MB for main workspace.

--vcf: twas_snp_chr1-temporary.bed + twas_snp_chr1-temporary.bim +
twas_snp_chr1-temporary.fam written.
2 variants loaded from .bim file.
487409 people (0 males, 0 females, 487409 ambiguous) loaded from .fam.
Ambiguous sex IDs written to twas_snp_chr1.nosex .
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 487409 founders and 0 nonfounders present.
Calculating allele frequencies... 0%1%2%3%4%5%6%7%8%9%10%11%12%13%14%15%16%17%18%19%20%21%22%23%24%25%26%27%28%29%30%31%32%33%34%35%36%37%38%39%40%41%42%43%44%45%46%47%48%49%50%51%52%53%54%55%56%57%58%59%60%61%62%63%64%65%66%67%68%69%70%71%72%73%74%75%76%77%78%79%80%81%82%83%84%85%86%87%88%89%90%91%92%93%94%95%96%97%98%99% done.
Total genotyping rate is 0.985801.
2 variants and 487409 people pass filters and QC.
Note: No phenotypes present.
--make-bed to twas_snp_chr1.bed + twas_snp_chr1.bim + twas_snp_chr1.fam ...
0%1%2%3%4%5%6%7%8%9%10%11%12%13%14%15%16%17%18%19%20%21%22%23%24%25%26%27%28%29%30%31%32%33%34%35%36%37%38%39%40%41%42%43%44%45%46%47%48%49%50%51%52%53%54%55%56%57%58%59%60%61%62%63%64%65%66%67%68%69%70%71%72%73%74%75%76%77%78%79%80%81%82%83%84%85%86%87%88%89%90%91%92%93%94%95%96%97%98%99%done.