@----------------------------------------------------------@
|        PLINK!       |     v1.07      |   10/Aug/2009     |
|----------------------------------------------------------|
|  (C) 2009 Shaun Purcell, GNU General Public License, v2  |
|----------------------------------------------------------|
|  For documentation, citation & bug-report instructions:  |
|        http://pngu.mgh.harvard.edu/purcell/plink/        |
@----------------------------------------------------------@

Web-check not implemented on this system...
Writing this text to log file [ exact20_m2_nocentrom_100k_10probes_merged_075_09_calidad_GC.log ]
Analysis started: Mon Oct  3 15:46:50 2016

Options in effect:
	--cfile nocentrom_100k_10probes_merged_075_09_calidad_GC
	--cnv-freq-method2 0.67
	--cnv-freq-include-exact 20
	--cnv-write
	--cnv-write-freq
	--out exact20_m2_nocentrom_100k_10probes_merged_075_09_calidad_GC

Reading marker information from [ nocentrom_100k_10probes_merged_075_09_calidad_GC.cnv.map ]
10224 (of 10224) markers to be included from [ nocentrom_100k_10probes_merged_075_09_calidad_GC.cnv.map ]
Reading individual information from [ nocentrom_100k_10probes_merged_075_09_calidad_GC.fam ]
Reading pedigree information from [ nocentrom_100k_10probes_merged_075_09_calidad_GC.fam ] 
808 individuals read from [ nocentrom_100k_10probes_merged_075_09_calidad_GC.fam ] 
808 individuals with nonmissing phenotypes
Assuming a disease phenotype (1=unaff, 2=aff, 0=miss)
Missing phenotype value is also -9
325 cases, 483 controls and 0 missing
525 males, 283 females, and 0 of unspecified sex

Reading segment list (CNVs) from [ nocentrom_100k_10probes_merged_075_09_calidad_GC.cnv ]
Filtering segments based on frequencies
Will remove 15042 CNVs based on frequency (after other filters)
15219 mapped to a person, of which 15219 passed filters
177 of 15219 mapped as valid segments
 CopyN Case/Control
     1      62 / 98
     3        8 / 9

Writing new CNV list to [ exact20_m2_nocentrom_100k_10probes_merged_075_09_calidad_GC.cnv ]
Writing new FAM file to [ exact20_m2_nocentrom_100k_10probes_merged_075_09_calidad_GC.fam ]

Analysis finished: Mon Oct  3 15:46:55 2016