So you are trying to connect to an actual altera FPGA? Are the pins
exposed (i.e. some kind of QFP, rather than BGA?)? Any input pin
should just be "high impedance", and the TDO pin will probably default
to zero. JTAG works off of a state machine controlled by the clock and
TMS pins, so it is possible to put the internal FSM into a state (data
shift, i think?) where it is basically a huge shift register with TDI
as the input and TDO as the output, so if you start shifting in data,
eventually you can verify it coming out the other side if it is all
working properly. I *think* the state machine might be universal, but
I'm not sure. Xilinx' IMPACT tool as a nice Debug GUI for letting you
manually "walk" the state machine by toggling pins, and it keeps track
with a nice diagram. Hope that helps
-chris