nmrML-COSMOS-FP7

Contact owners and managers

1–30 of 54

nmrML subgroup of COSMOS (CCOordination of Standards in MetabOlomicS) initiative.

A user group for participation in the development and promotion of a vendor-independent nmrML data exchange standard. A new data exchange standard is required for the exchange of NMR spectroscopy based metabolomics data. Building on the excellent experience with XML based formats, we would like to invite any one who is interested in participating in develop the nmrML format, a corresponding controlled vocabulary and coordinate the implementation of parsers and tools for validation.

Instrument vendors, authors of NMR tools metabolomics databases and any one with interest in open source NMR file formats are welcomed to join.

Official website: http://nmrml.org/

0 selected

11/14/17

nmrCV now available under Ontology Lookup Service (OLS); nmrML paper out as a preprint

Dear nmrML users and developers. The nmr controlled vocabulary nmrCV is now available under the OLS

unread,

nmrCV now available under Ontology Lookup Service (OLS); nmrML paper out as a preprint

Dear nmrML users and developers. The nmr controlled vocabulary nmrCV is now available under the OLS

11/14/17

8/4/17

nmrML paper now under review, please check nmrML webservices

Dear all, Our nmrML paper to solicit user feedback has been submitted the AC and is now under review.

unread,

nmrML paper now under review, please check nmrML webservices

Dear all, Our nmrML paper to solicit user feedback has been submitted the AC and is now under review.

8/4/17

5/31/17

nmrML paper to be submitted soon

Dear all, As you are surely aware, we are about to submit our nmrML paper these days. For that reason

unread,

nmrML paper to be submitted soon

Dear all, As you are surely aware, we are about to submit our nmrML paper these days. For that reason

5/31/17

11/13/15

consolidate the nmrML.xsd

Steffen Neumann a écrit : >We should consolidate the nmrML.xsd in the tools prior to the paper

unread,

consolidate the nmrML.xsd

Steffen Neumann a écrit : >We should consolidate the nmrML.xsd in the tools prior to the paper

11/13/15

Reza Salek, Ebbels, Timothy M D3

10/14/15

Dear Christian Jie actually replied to your email but it was rejected by the list server. I've

unread,

Dear Christian Jie actually replied to your email but it was rejected by the list server. I've

10/14/15

D Schober, … Steffen Neumann6

5/13/15

Please edit MetaboNews spotlight article on nmrML

Dear all, I am currently writing up a generic data standards review/tutorial from the COSMOS point of

unread,

Please edit MetaboNews spotlight article on nmrML

Dear all, I am currently writing up a generic data standards review/tutorial from the COSMOS point of

5/13/15

DJ, … Philippe7

3/2/15

[nmrCV] proposals of new terms

Dear All, I was wondering if there had been a recent commit/update to the NMR-CV. The last one seems

unread,

[nmrCV] proposals of new terms

Dear All, I was wondering if there had been a recent commit/update to the NMR-CV. The last one seems

3/2/15

2/24/15

Dear Gonçalo, Thank you for presenting your work, seems you have also interest in the nmrML format?

unread,

Dear Gonçalo, Thank you for presenting your work, seems you have also interest in the nmrML format?

2/24/15

11/20/14

First RDF/LinkedMetabolomics hangout next Wednesday

Dear potentially interested parties, We like to initiate the discussions about the semantic web

unread,

First RDF/LinkedMetabolomics hangout next Wednesday

Dear potentially interested parties, We like to initiate the discussions about the semantic web

11/20/14

D Schober, … Daniel JACOB5

11/12/14

nmrML converter tutorial video

Great !! Daniel 2014-11-11 13:33 GMT+01:00 Reza Salek <reza....@ebi.ac.uk>: No with the link

unread,

nmrML converter tutorial video

Great !! Daniel 2014-11-11 13:33 GMT+01:00 Reza Salek <reza....@ebi.ac.uk>: No with the link

11/12/14

D Schober (via Google Docs)

11/5/14

nmrML Spotlight article - Invitation to edit

D Schober has invited you to edit the following document: nmrML Spotlight article Open in Docs Google

unread,

nmrML Spotlight article - Invitation to edit

D Schober has invited you to edit the following document: nmrML Spotlight article Open in Docs Google

11/5/14

10/24/14

Re: [Metabolights-help] MetaboLights Website General Request

Dear nmrML community, I would like to bring to your attention, email below by Sean, also cc'ed

unread,

Re: [Metabolights-help] MetaboLights Website General Request

Dear nmrML community, I would like to bring to your attention, email below by Sean, also cc'ed

10/24/14

Steffen Neumann3

10/1/14

Re: Starting a matlab nmrML toolbox ?

Dear Jie, Thanks for getting this started! On So, 2014-09-28 at 04:46 +0000, Hao, Jie wrote: > The

unread,

Re: Starting a matlab nmrML toolbox ?

Dear Jie, Thanks for getting this started! On So, 2014-09-28 at 04:46 +0000, Hao, Jie wrote: > The

10/1/14

9/19/14

nmrML and SpectrumPeakList

Hi, The extension of the XSD schema is well designed for reference compounds or for samples with well

unread,

nmrML and SpectrumPeakList

Hi, The extension of the XSD schema is well designed for reference compounds or for samples with well

9/19/14

Daniel Schober (via Google Docs)

9/9/14

D2.8 Guideline Document on RDF and SPARQL for metabolomics resources (nmrml@googlegroups.com)

I've shared an item with you. D2.8 Guideline Document on RDF and SPARQL for metabolomics

unread,

D2.8 Guideline Document on RDF and SPARQL for metabolomics resources (nmrml@googlegroups.com)

I've shared an item with you. D2.8 Guideline Document on RDF and SPARQL for metabolomics

9/9/14

Daniel Schober (via Google Docs)

9/9/14

D2.5 Real converters, parsers & validators (nmrml@googlegroups.com)

I've shared an item with you. D2.5 Real converters, parsers & validators Google Docs: Create

unread,

D2.5 Real converters, parsers & validators (nmrml@googlegroups.com)

I've shared an item with you. D2.5 Real converters, parsers & validators Google Docs: Create

9/9/14

8/1/14

nmrML converter on the nmrml.org site

Hi, I developped a small web app using the nmrML converter written in JAVA (by Luis FF & me). See

unread,

nmrML converter on the nmrml.org site

Hi, I developped a small web app using the nmrML converter written in JAVA (by Luis FF & me). See

8/1/14

Daniel Schober (via Google Docs)

7/29/14

Agenda nmrML Hangout 2014-08-06 (nmrml@googlegroups.com)

I've shared an item with you. Agenda nmrML Hangout 2014-08-06 Google Docs: Create and edit

unread,

Agenda nmrML Hangout 2014-08-06 (nmrml@googlegroups.com)

I've shared an item with you. Agenda nmrML Hangout 2014-08-06 Google Docs: Create and edit

7/29/14

6/18/14

vendor representatives to involve in nmrCV term gathering for NMR Instruments, probes, software

Dear nmrML developers and interested parties. I wonder if someone could provide me with a suitable

unread,

vendor representatives to involve in nmrCV term gathering for NMR Instruments, probes, software

Dear nmrML developers and interested parties. I wonder if someone could provide me with a suitable

6/18/14

Steffen Neumann

4/23/14

nmrML online validator in beta

Hi, I have now enabled the nmrML online validator at http://msbi.ipb-halle.de/nmrML/ You can upload

unread,

nmrML online validator in beta

Hi, I have now enabled the nmrML online validator at http://msbi.ipb-halle.de/nmrML/ You can upload

4/23/14

Steffen Neumann, … Reza Salek4

3/7/14

nmRIO now reads FID from all our exporters

Excellent! all on track Best wishes, Reza On 7 Mar 2014, at 13:30, Daniel JACOB <djacob65@gmail.

unread,

nmRIO now reads FID from all our exporters

Excellent! all on track Best wishes, Reza On 7 Mar 2014, at 13:30, Daniel JACOB <djacob65@gmail.

3/7/14

Steffen Neumann, DJ3

3/7/14

Decoding the fid in HMDB00005.nmrML

Hi Daniel, the naming complex128 is the confusing thing: https://github.com/nmrML/nmrML/issues/74#

unread,

Decoding the fid in HMDB00005.nmrML

Hi Daniel, the naming complex128 is the confusing thing: https://github.com/nmrML/nmrML/issues/74#

3/7/14

Steffen Neumann, … DJ4

3/7/14

<fidData> Specification

Hi, On Thu, 2014-03-06 at 07:25 -0800, DJ wrote: > 1) Supported byteFormat's I have created a

unread,

<fidData> Specification

Hi, On Thu, 2014-03-06 at 07:25 -0800, DJ wrote: > 1) Supported byteFormat's I have created a

3/7/14

DJ, … Steffen Neumann5

3/7/14

bruker example for nmrml.org

Hi Daniel, On Mon, 2014-03-03 at 12:07 +0100, Daniel JACOB wrote: [...] > > You can view such

unread,

bruker example for nmrml.org

Hi Daniel, On Mon, 2014-03-03 at 12:07 +0100, Daniel JACOB wrote: [...] > > You can view such

3/7/14

2/26/14

Browse nmrCV with jOWL Browser

Oups ! I would say "nmrCV" and not nmrML, so http://services.cbib.u-bordeaux2.fr/SPECNMR/

unread,

Browse nmrCV with jOWL Browser

Oups ! I would say "nmrCV" and not nmrML, so http://services.cbib.u-bordeaux2.fr/SPECNMR/

2/26/14

2/24/14

Add GABA as Reference spectra example

Hi, I put on the GitHib a new reference spectra example. That's the GABA compound acquired with a

unread,

Add GABA as Reference spectra example

Hi, I put on the GitHib a new reference spectra example. That's the GABA compound acquired with a

2/24/14

Steffen Neumann

2/2/14

Still validation problems for HMDB00005.nmrML and bmse000325.nmrML

Hi, Which are the nmrML example files we want to present on the website, and which we need to

unread,

Still validation problems for HMDB00005.nmrML and bmse000325.nmrML

Hi, Which are the nmrML example files we want to present on the website, and which we need to

2/2/14

Luís Figueiredo

1/31/14

Re: [nmrml:65] Digest for nmrml@googlegroups.com - 2 Messages in 2 Topics

Hi, I have committed a R script with two examples how to process the spectra, using nmRIO to read the

unread,

Re: [nmrml:65] Digest for nmrml@googlegroups.com - 2 Messages in 2 Topics

Hi, I have committed a R script with two examples how to process the spectra, using nmRIO to read the

1/31/14

Steffen Neumann

1/30/14

Re: [nmrml:64] Editing nmrML.org web pages - even simpler!

One addition: for super-simple teeny-weeny tiny changes, you can even use the github web-editor: Go

unread,

Re: [nmrml:64] Editing nmrML.org web pages - even simpler!

One addition: for super-simple teeny-weeny tiny changes, you can even use the github web-editor: Go

1/30/14

Steffen Neumann

1/29/14

Editing nmrML.org web pages

Hi, here is a very basic intro to editing our nmrml.org web pages. This text is also available in the

unread,

Editing nmrML.org web pages

Hi, here is a very basic intro to editing our nmrml.org web pages. This text is also available in the

1/29/14

Search

Clear search

Close search

Google apps

Main menu