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NAU: Introduction to Bioinformatics (CS/Bio 299)
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Greg Caporaso
10/19/12
NAU bioinformatics interest list
Hi all, I routinely have people contacting me who are looking for students interested in
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NAU bioinformatics interest list
Hi all, I routinely have people contacting me who are looking for students interested in
10/19/12
Greg Caporaso
12/15/11
programming notebook 2 mix-up
Hi all, Just a reminder: if you currently have a zero in BBLearn for programming notebook 2, forward
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programming notebook 2 mix-up
Hi all, Just a reminder: if you currently have a zero in BBLearn for programming notebook 2, forward
12/15/11
Greg Caporaso
12/6/11
Lecture 28 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture28_FinalExamReview.pptx.pdf
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Lecture 28 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture28_FinalExamReview.pptx.pdf
12/6/11
Greg Caporaso
12/5/11
plan for class tomorrow
Hi all, I just wanted to give a quick update on class tomorrow. While most of the class period will
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plan for class tomorrow
Hi all, I just wanted to give a quick update on class tomorrow. While most of the class period will
12/5/11
Greg Caporaso
12/1/11
a couple of clarifications on programming assignment 3
Hi all, A couple of clarifications. 1) I had a typo in the assignment where I called the
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a couple of clarifications on programming assignment 3
Hi all, A couple of clarifications. 1) I had a typo in the assignment where I called the
12/1/11
Greg Caporaso
11/30/11
NYT on bioinformatics
Awesome article in The New York Times today: http://www.nytimes.com/2011/12/01/business/dna-
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NYT on bioinformatics
Awesome article in The New York Times today: http://www.nytimes.com/2011/12/01/business/dna-
11/30/11
Greg Caporaso
11/30/11
Monte Carlo AI Course
Hi all, If you're interested in pursuing a career in bioinformatics, this could be a really
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Monte Carlo AI Course
Hi all, If you're interested in pursuing a career in bioinformatics, this could be a really
11/30/11
Greg Caporaso
11/30/11
better source for full genome sequences
Hi all, Yesterday I mentioned the genomesonline.org site. I was poking around this morning, and I
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better source for full genome sequences
Hi all, Yesterday I mentioned the genomesonline.org site. I was poking around this morning, and I
11/30/11
Greg Caporaso
11/29/11
course evaluations
Hi all, Please remember to fill in the course evaluations - your input and feedback on the course is
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course evaluations
Hi all, Please remember to fill in the course evaluations - your input and feedback on the course is
11/29/11
Greg Caporaso
11/29/11
lecture 25 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture25.pptx.pdf
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lecture 25 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture25.pptx.pdf
11/29/11
Greg Caporaso
11/28/11
Re: Presentation Dates
No, the group originally scheduled for tomorrow is still presenting tomorrow. The group originally
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Re: Presentation Dates
No, the group originally scheduled for tomorrow is still presenting tomorrow. The group originally
11/28/11
Greg Caporaso
11/18/11
extra reading assignment
Hi all, The extra reading assignment to make up for next Tuesday's class is the first chapter of
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extra reading assignment
Hi all, The extra reading assignment to make up for next Tuesday's class is the first chapter of
11/18/11
Greg Caporaso
11/17/11
remaining presentation reading assignments are listed on the course schedule
https://docs.google.com/spreadsheet/ccc?key=0AvglGXLayhG7dERwWWVmZERBeGQtRjRZLVZ3RmJTTlE&hl=en_US
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remaining presentation reading assignments are listed on the course schedule
https://docs.google.com/spreadsheet/ccc?key=0AvglGXLayhG7dERwWWVmZERBeGQtRjRZLVZ3RmJTTlE&hl=en_US
11/17/11
Greg Caporaso
11/17/11
bring laptops today if possible
I realize it may be too late, but please bring laptops to class today if possible. We're going to
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bring laptops today if possible
I realize it may be too late, but please bring laptops to class today if possible. We're going to
11/17/11
Greg Caporaso
11/15/11
Lecture 23 slides and change of plans for today's lecture topic
Hi all, I'm going to deviate from the schedule a bit and change today's lecture topic. We
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Lecture 23 slides and change of plans for today's lecture topic
Hi all, I'm going to deviate from the schedule a bit and change today's lecture topic. We
11/15/11
Greg Caporaso
2
11/13/11
instructions for connecting to EC2 instances on Windows
Thanks a lot Jonah - I think this will really help out! ---------- Forwarded message ---------- From:
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instructions for connecting to EC2 instances on Windows
Thanks a lot Jonah - I think this will really help out! ---------- Forwarded message ---------- From:
11/13/11
Greg Caporaso
11/10/11
class cancelled on Tues Nov 22nd
Hi all, I'm going to need to cancel class on Tuesday November 22nd: some last minute travel came
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class cancelled on Tues Nov 22nd
Hi all, I'm going to need to cancel class on Tuesday November 22nd: some last minute travel came
11/10/11
Greg Caporaso
11/10/11
reading assignment/presentation for Thursday Nov 17th
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044276/pdf/1471-2105-12-S1-S21.pdf
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reading assignment/presentation for Thursday Nov 17th
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044276/pdf/1471-2105-12-S1-S21.pdf
11/10/11
Greg Caporaso
11/10/11
Lecture 22 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture22.pptx.pdf
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Lecture 22 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture22.pptx.pdf
11/10/11
Greg Caporaso
11/8/11
programming assignment 1 grades updated in BBLearn
Hi All, If you turned in the extra credit and/or the resubmission of the first programming assignment
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programming assignment 1 grades updated in BBLearn
Hi All, If you turned in the extra credit and/or the resubmission of the first programming assignment
11/8/11
Greg Caporaso
11/8/11
application presentation for Tuesday, Nov 15th
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Genome%20Res.-2009-Parks-1896-904.pdf
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application presentation for Tuesday, Nov 15th
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Genome%20Res.-2009-Parks-1896-904.pdf
11/8/11
Greg Caporaso
11/8/11
Lecture 21 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture21.pptx.pdf
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Lecture 21 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture21.pptx.pdf
11/8/11
Greg Caporaso
11/3/11
Fwd: Costa Rica / Panama - Summer Abroad 2012 - Meeting November 9th 4:00 PM EGR 314
Possibly of interest to some students... ---------- Forwarded message ---------- From: Stephen P Mead
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Fwd: Costa Rica / Panama - Summer Abroad 2012 - Meeting November 9th 4:00 PM EGR 314
Possibly of interest to some students... ---------- Forwarded message ---------- From: Stephen P Mead
11/3/11
Greg Caporaso
11/3/11
python book to complement LPTHW
Hi all, A lot of the new programmers in the class have been asking about a python book to complement
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python book to complement LPTHW
Hi all, A lot of the new programmers in the class have been asking about a python book to complement
11/3/11
Greg Caporaso
11/3/11
reading for application presentation on Thurs 11/10
This is posted on the google spreadsheet and you can find it here: http://bioinformatics.
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reading for application presentation on Thurs 11/10
This is posted on the google spreadsheet and you can find it here: http://bioinformatics.
11/3/11
Greg Caporaso
11/3/11
lecture 20 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture20.pptx.pdf
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lecture 20 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture20.pptx.pdf
11/3/11
Greg Caporaso
11/1/11
First student application presentation will be next Tuesday, Nov 8th
Hi all, We'll start the student application presentations one week from today with the attached
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First student application presentation will be next Tuesday, Nov 8th
Hi all, We'll start the student application presentations one week from today with the attached
11/1/11
Greg Caporaso
11/1/11
Lecture 19 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture19.pptx.pdf
unread,
Lecture 19 slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture19.pptx.pdf
11/1/11
Greg Caporaso
10/27/11
reminder: bring laptops to class today if possible
I'm going to introduce the EC2 computing environment and would like to have everyone work through
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reminder: bring laptops to class today if possible
I'm going to introduce the EC2 computing environment and would like to have everyone work through
10/27/11
Greg Caporaso
10/27/11
today's lecture slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture18.pptx.pdf
unread,
today's lecture slides
http://dl.dropbox.com/u/2868868/cs299_slides_XCFGcsdFGGad/Lecture18.pptx.pdf
10/27/11