================================================================================ ================================================================================ Starting configure run at Wed, 18 Dec 2019 13:01:34 -0600 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions LDFLAGS=-dynamic --download-hypre=1 --with-debugging=no --with-shared-libraries=1 --download-fblaslapack=1 --download-metis=1 --download-ptscotch=1 --download-parmetis=1 --download-superlu_dist=1 --download-mumps=1 --download-scalapack=1 --download-slepc --with-mpi=1 --with-mpiexec=aprun --with-cxx-dialect=C++11 --with-fortran-bindings=0 --with-sowing=0 Working directory: /p/work/tmondrag/moose/petsc Machine platform: ('Linux', 'onyx01.erdc.hpc.mil', '4.4.178-94.91-default', '#1 SMP Thu May 2 20:14:31 UTC 2019 (d683ca1)', 'x86_64', 'x86_64') Python version: 2.7.13 (default, Jan 11 2017, 10:56:06) [GCC] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/framework.py:911) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:911) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/gdb...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/gdb...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/gdb...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/gdb...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/gdb...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/gdb...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/gdb...not found Checking for program /usr/local/krb5/bin/gdb...not found Checking for program /usr/local/krb5/openssl/bin/gdb...not found Checking for program /usr/local/krb5/bin/gdb...not found Checking for program /usr/local/krb5/openssl/bin/gdb...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/gdb...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/gdb...not found Checking for program /opt/pbs/default/bin/gdb...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/gdb...not found Checking for program /opt/java/jdk1.8.0_152/bin/gdb...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/gdb...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/gdb...not found Checking for program /opt/gcc/7.2.0/bin/gdb...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" child config.utilities.debuggers 0.084346 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/p/work/tmondrag/moose/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 12 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.028899 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/p/work/tmondrag/moose/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.002267 ================================================================================ TEST configureGit from config.sourceControl(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/git...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/git...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/git...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/git...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/git...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/git...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/git...not found Checking for program /usr/local/krb5/bin/git...not found Checking for program /usr/local/krb5/openssl/bin/git...not found Checking for program /usr/local/krb5/bin/git...not found Checking for program /usr/local/krb5/openssl/bin/git...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/git...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/git...not found Checking for program /opt/pbs/default/bin/git...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/git...not found Checking for program /opt/java/jdk1.8.0_152/bin/git...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/git...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/git...not found Checking for program /opt/gcc/7.2.0/bin/git...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.12.3 child config.sourceControl 0.029614 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/p/work/tmondrag/moose/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.12.1-23-g5ea3abfa7f Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 5ea3abfa7fe8791a5f316416921daa28f47703d9 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2019-10-29 13:35:52 +0000 Executing: ['git', 'branch'] stdout: * (HEAD detached at 5ea3abfa7f) master Defined "VERSION_GIT" to ""v3.12.1-23-g5ea3abfa7f"" Defined "VERSION_DATE_GIT" to ""2019-10-29 13:35:52 +0000"" Defined "VERSION_BRANCH_GIT" to ""(HEAD detached at 5ea3abfa7f)"" child PETSc.options.petscclone 0.876913 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/p/work/tmondrag/moose/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/p/work/tmondrag/moose/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: arch-moose/lib/petsc/conf/configure-hash Deleting configure hash file: arch-moose/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-moose/lib/petsc/conf/configure-hash child PETSc.options.arch 3.557400 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/p/work/tmondrag/moose/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/p/home/tmondrag/WORK/moose/petsc/arch-moose" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/p/work/tmondrag/moose/petsc/config/PETSc/options/installDir.py:79) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:79) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/p/work/tmondrag/moose/petsc/config/PETSc/options/installDir.py:72) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:72) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/p/work/tmondrag/moose/petsc/config/PETSc/options/installDir.py:56) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:56) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /p/home/tmondrag/WORK/moose/petsc/arch-moose/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/p/work/tmondrag/moose/petsc/config/PETSc/options/installDir.py:92) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:92) child PETSc.options.installDir 0.009293 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/p/work/tmondrag/moose/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/p/work/tmondrag/moose/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000386 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/p/work/tmondrag/moose/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" child PETSc.options.languages 0.001223 ================================================================================ TEST printEnvVariables from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1715) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1715) **** printenv **** CRAY_MPICH_BASEDIR=/opt/cray/pe/mpt/7.6.3/gni CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/17.11.1 CPU=x86_64 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/petsc/3.7.6.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig INFOPATH=/opt/gcc/7.2.0/snos/share/info PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=8.6 PE_FFTW_DEFAULT_TARGET_share=share HISTSIZE=1000 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=160 CSI_HOME=/usr/local/applic CRAY_LIBSCI_VERSION=17.11.1 JAVA_HOME=/opt/java/jdk1.8.0_152 craype_already_loaded=0 PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/17.11.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig FPATH=:/opt/cray/pe/modules/3.2.10.6/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.10.6/init/sh_funcs/no_redirect PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf-hdf5parallel/4.4.1.1.3/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5/1.10.0.3/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_skylake=6.1 XDG_SESSION_ID=c360261 PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/trilinos/12.10.1.1/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_skylake=x86_skylake PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 KSH_AUTOLOAD=1 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=5.3 4.9 CSHEDIT=emacs PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/include USER=tmondrag PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=160 PET_HOME=/p/app/unsupported/PETtools/CE PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 JDK_HOME=/usr/lib64/jvm/java PE_HDF5_DEFAULT_GENCOMPS_GNU=51 49 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/17.11.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 APP2_STATE=6.5.2 JAVA_BINDIR=/opt/java/jdk1.8.0_152/bin PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_skylake=160 PE_LIBSCI_DEFAULT_OMP_REQUIRES= PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf/4.4.1.1.3/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.3 PE_PETSC_DEFAULT_GENCOMPS_GNU_skylake=61 PETSCCXXREALMPI_HOME=/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=86 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY INTEL PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=86 TMPDIR=/p/work/tmondrag TGHOME=/usr/local/applic/truegrid/default LSTC_SECURITY_DIR=/usr/local/applic/ls-dyna/NETsecurity PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=51 49 _LMFILES_=/opt/cray/pe/modulefiles/modules/3.2.10.6:/opt/modulefiles/gcc/7.2.0:/opt/cray/pe/craype/2.5.13/modulefiles/craype-broadwell:/opt/cray/pe/craype/2.5.13/modulefiles/craype-hugepages2M:/opt/cray/pe/craype/2.5.13/modulefiles/craype-network-aries:/opt/cray/pe/modulefiles/craype/2.5.13:/opt/cray/pe/modulefiles/cray-mpich/7.6.3:/opt/modulefiles/java/jdk1.8.0_152:/opt/modulefiles/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari:/opt/modulefiles/pbs:/opt/cray/ari/modulefiles/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari:/usr/local/modulefiles/unsupported/costinit:/opt/cray/pe/modulefiles/cray-libsci/17.11.1:/opt/cray/ari/modulefiles/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari:/opt/cray/ari/modulefiles/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari:/opt/cray/pe/modulefiles/pmi/5.0.12:/opt/cray/ari/modulefiles/dmapp/7.1.1-6.0.7.1_6.2__g45d1b37.ari:/opt/cray/ari/modulefiles/gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari:/opt/cray/ari/modulefiles/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari:/opt/cray/ari/modulefiles/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari:/opt/cray/ari/modulefiles/dvs/2.7_2.2.120-6.0.7.1_12.1__g74cb2cc4:/opt/cray/ari/modulefiles/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari:/opt/cray/ari/modulefiles/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari:/opt/cray/pe/modulefiles/atp/2.1.1:/opt/cray/pe/modulefiles/perftools-base/6.5.2:/opt/cray/pe/modulefiles/PrgEnv-gnu/6.0.4:/p/app/unsupported/COST/modules/valgrind-mpi/gnu/craympt/3.12.0:/p/app/unsupported/COST/modules/petsc-cxx-real-mpi/gnu/craympt/3.7.4 MODULE_VERSION=3.2.10.6 LIBSCI_VERSION=17.11.1 CRAYPAT_LD_LIBRARY_PATH=/opt/cray/pe/gcc-libs:/opt/cray/gcc-libs:/opt/cray/pe/perftools/6.5.2/lib64 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/include FC=ftn PE_MPICH_DEFAULT_GENCOMPS_GNU=51 49 HOME=/p/home/tmondrag PE_LIBSCI_GENCOMPS_INTEL_x86_64=160 PE_GA_DEFAULT_FIXED_PRGENV=CRAY PGI INTEL SAMPLES_HOME=/p/app/unsupported/Example_Codes PE_GA_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 PAT_REPORT_PRUNE_NAME=_cray$mt_start_,__cray_hwpc_,f_cray_hwpc_,cstart,__pat_,pat_region_,PAT_,OMP.slave_loop,slave_entry,_new_slave_entry,THREAD_POOL_join,__libc_start_main,_start,__start,start_thread,__wrap_,UPC_ADIO_,_upc_,upc_,__caf_,__pgas_,syscall,__device_stub LSTC_LICENSE_SERVER=10.128.0.95 PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda NNTPSERVER=news ATP_IGNORE_SIGTERM=1 HOST=onyx01.erdc.hpc.mil PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU HUGETLB_MORECORE_HEAPBASE=10000000000 PE_PGI_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.7/PGI/15.3/lib/pkgconfig PE_MPICH_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_MPICH_MODULE_NAME=cray-mpich PE_LIBSCI_ACC_DEFAULT_VOLATILE_PRGENV=CRAY GNU PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_skylake=86 PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/fftw/3.3.6.2/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=160 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.8.1.3/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig JRE_HOME=/opt/java/jdk1.8.0_152/jre PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/17.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=61 51 49 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY INTEL PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.6.3/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64 PAT_BUILD_PAPI_BASEDIR=/opt/cray/pe/papi/5.5.1.3 BC_STANDARD_NODE_CORES=44 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_ALTERNATE_LIBS_@multithreaded@:PE_MPICH_ALTERNATE_LIBS_@dpm@ LIBSCI_BASE_DIR=/opt/cray/pe/libsci/17.11.1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_skylake=61 ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/pe/atp/2.1.1/libApp/ COLORTERM=1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=51 49 KRB5CCNAME=PIPE:1023 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.0.3/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig BC_PHI_NODE_CORES=64 PE_GA_DEFAULT_VOLATILE_PRGENV=GNU OLDPWD=/p/home/tmondrag/WORK/moose LOADEDMODULES=modules/3.2.10.6:gcc/7.2.0:craype-broadwell:craype-hugepages2M:craype-network-aries:craype/2.5.13:cray-mpich/7.6.3:java/jdk1.8.0_152:eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari:pbs:ccm/2.5.4-6.0.7.1_5.27__g394754f.ari:costinit:cray-libsci/17.11.1:udreg/2.3.2-6.0.7.1_5.13__g5196236.ari:ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari:pmi/5.0.12:dmapp/7.1.1-6.0.7.1_6.2__g45d1b37.ari:gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari:xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari:job/2.2.3-6.0.7.1_5.44__g6c4e934.ari:dvs/2.7_2.2.120-6.0.7.1_12.1__g74cb2cc4:alps/6.6.43-6.0.7.1_5.46__ga796da32.ari:rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari:atp/2.1.1:perftools-base/6.5.2:PrgEnv-gnu/6.0.4:valgrind-mpi/gnu/craympt/3.12.0:petsc-cxx-real-mpi/gnu/craympt/3.7.4 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6 AEROSOFT_HOME=/usr/local/applic/gasp/default/aerosoft PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=160 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ PE_MPICH_ALTERNATE_LIBS_multithreaded=_mt CRAY_LD_LIBRARY_PATH=/opt/cray/pe/perftools/6.5.2/lib64:/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/lib64:/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/lib64:/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/lib64:/opt/cray/dmapp/7.1.1-6.0.7.1_6.2__g45d1b37.ari/lib64:/opt/cray/pe/pmi/5.0.12/lib64:/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/lib64:/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/lib64:/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64/lib:/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PE_PAPI_DEFAULT_ACCEL_LIBS= LESS=-M -I -R PE_LIBSCI_GENCOMPILERS_GNU_x86_64=6.1 5.1 4.9 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=16.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6 PE_LIBSCI_ACC_DEFAULT_GENCOMPS_CRAY_x86_64=85 PE_HUGEPAGES_PAGE_SIZE=0x20000000 CRAYPE_NETWORK_TARGET=aries USERMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-compat:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:craypat:craype:craypkg-gen:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview GCC_PATH=/opt/gcc/7.2.0 XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_skylake=160 CRAY_CPU_TARGET=broadwell CHPL_CG_CPP_LINES=1 PE_PKGCONFIG_PRODUCTS=PE_LIBSCI:PE_HUGEPAGES:PE_MPICH LDFLAGS=-L/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/lib -L/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/lib PE_LIBSCI_MODULE_NAME=cray-libsci/17.11.1 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PELOCAL_PRGENV=true PE_PETSC_DEFAULT_GENCOMPS_INTEL_skylake=160 PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=160 TARGETMODULES=craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_mic_knl=86 PE_PAPI_DEFAULT_ACCEL_FAMILY_LIBS_nvidia=,-lcupti,-lcudart,-lcuda CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.1.1-6.0.7.1_6.2__g45d1b37.ari/lib64 LSTC_LICENSE=network LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32: HUGETLB_ELFMAP=W PE_SMA_DEFAULT_COMPFLAG= PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=53 49 JAVA_ROOT=/opt/java/jdk1.8.0_152 TGPORT=50028 50029 50030 50031 50032 50033 50034 50035 50036 50037 PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=86 MODULE_VERSION_STACK=3.2.10.6 PE_MPICH_PKGCONFIG_LIBS=mpich SHLVL=2 CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/include PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/lib64 PETSC_DIR=/p/home/tmondrag/WORK/moose/scripts/../petsc PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.6 PERFTOOLS_VERSION=6.5.2 PE_TPSL_DEFAULT_GENCOMPS_CRAY_mic_knl=86 PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia35=nv35 PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL XTPE_NETWORK_TARGET=aries PE_TPSL_DEFAULT_GENCOMPS_INTEL_mic_knl=160 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_mic_knl=160 PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=160 LS_OPTIONS=-N --color=auto -T 0 MODULEPATH=/opt/cray/pe/perftools/6.5.2/modulefiles:/opt/cray/pe/craype/2.5.13/modulefiles:/opt/cray/pe/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/usr/local/modulefiles/apps:/usr/local/modulefiles/unsupported:/p/home/tmondrag/modulefiles:/p/app/unsupported/COST/modules:/opt/cray/ari/modulefiles:/opt/cray/pe/ari/modulefiles PE_HDF5_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_PETSC_DEFAULT_GENCOMPS_CRAY_skylake=86 CMAKE_LIBRARY_PATH=/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/lib:/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/lib COST_MODULES_DIR=/p/app/unsupported/COST/modules MPSCP_PORTS=tcp[9000-9999] PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=160 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=86 HUGETLB_DEFAULT_PAGE_SIZE=2M PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 PE_MPICH_DEFAULT_GENCOMPS_CRAY=86 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=86 KRB5_HOME=/usr/local/krb5 WORK=/p/work PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=16.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_mic_knl=16.0 ATP_HOME=/opt/cray/pe/atp/2.1.1 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.7_2.2.120-6.0.7.1_12.1__g74cb2cc4/include CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/lib64 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_skylake=6.1 SHMEM_ABORT_ON_ERROR=1 PKG_CONFIG_PATH_DEFAULT=/opt/cray/pe/papi/5.5.1.3/lib64/pkgconfig LESSOPEN=lessopen.sh %s PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_skylake=6.1 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_CXX_PKGCONFIG_LIBS=mpichcxx PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=8.6 SSH_TTY=/dev/pts/6 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1 4.9 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=16.0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6 MPSCP_CONFIG_FILENAME=/p/app/unsupported/local/etc/mpscp_config.onyx01 CVS_RSH=ssh PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY INTEL PE_FFTW_DEFAULT_TARGET_broadwell=broadwell PE_MPICH_GENCOMPILERS_GNU=5.1 4.9 PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=51 49 SSH_CLIENT=134.164.188.51 55206 22 LOGNAME=tmondrag PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.6.3/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PATH=/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin:/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin:/opt/cray/pe/perftools/6.5.2/bin:/opt/cray/pe/papi/5.5.1.3/bin:/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin:/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin:/opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin:/usr/local/krb5/bin:/usr/local/krb5/openssl/bin:/usr/local/krb5/bin:/usr/local/krb5/openssl/bin:/opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin:/opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin:/opt/pbs/default/bin:/opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin:/opt/java/jdk1.8.0_152/bin:/opt/cray/pe/mpt/7.6.3/gni/bin:/opt/cray/pe/craype/2.5.13/bin:/opt/gcc/7.2.0/bin:/opt/cray/pe/modules/3.2.10.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/pbs/bin:/opt/cray/pe/bin:/pbs/SLB:/usr/local/man:/p/app/unsupported/local/bin:/usr/local/applic/COTS:/app/mpiutil:/pbs/SLB:/usr/local/man:/p/app/unsupported/local/bin:/usr/local/applic/COTS:/app/mpiutil PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=160 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH CMAKE_INCLUDE_PATH=/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/include:/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/include CRAY_PRE_COMPILE_OPTS=-hnetwork=aries COST_HOME=/p/app/unsupported/COST PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=16.0 MPICH_DIR=/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.6 PE_LIBSCI_OMP_REQUIRES= PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.8.1.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.4.1.1.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.4.1.1.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/mpt/7.6.3/gni/mpich-intel/16.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.0.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.0.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.7/INTEL/15.0/lib/pkgconfig PE_MPICH_FIXED_PRGENV=INTEL PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_mic_knl=16.0 PE_LIBSCI_GENCOMPS_GNU_x86_64=61 51 49 PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ OFFLOAD_INIT=on_start PE_PAPI_DEFAULT_ACCELL_FAMILY_LIBS= PE_MPICH_NV_LIBS_nvidia60=-lcudart PE_PKGCONFIG_LIBS=AtpSigHandler:cray-rca:libsci_mpi:libsci:craype-hugepages:mpich ARCHIVE_HOST=gold.erdc.hpc.mil BC_NODE_TYPE=LOGIN PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=6.1 5.1 4.9 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=8.6 KRB5HOME=/usr/local/krb5 CRAYPE_DIR=/opt/cray/pe/craype/2.5.13 XDG_DATA_DIRS=/usr/share PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.6 PE_MPICH_TARGET_VAR_nvidia35=-lcudart CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pe/pmi/5.0.12/include MANPATH=/opt/cray/pe/perftools/6.5.2/man:/opt/cray/pe/papi/5.5.1.3/share/pdoc/man:/opt/cray/pe/atp/2.1.1/man:/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/man:/opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/man:/opt/cray/pe/pmi/5.0.12/man:/opt/cray/pe/libsci/17.11.1/man:/opt/cray/pe/man/csmlversion:/usr/local/krb5/share/man:/usr/local/krb5/share/man:/opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/man:/opt/pbs/default/man:/opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/man:/opt/java/jdk1.8.0_152/man:/opt/cray/pe/mpt/7.6.3/gni/man/mpich:/opt/cray/pe/craype/2.5.13/man:/opt/gcc/7.2.0/snos/share/man:/opt/cray/pe/modules/3.2.10.6/share/man:/usr/local/man:/usr/local/share/man:/usr/share/man:/opt/cray/share/man:/opt/pbs/share/man:/opt/cray/pe/man:/p/app/unsupported/local/man:/p/app/unsupported/local/man BC_BIGMEM_NODE_CORES=44 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 PROFILEREAD=true PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=53 49 PE_PETSC_DEFAULT_GENCOMPS_GNU_mic_knl=53 PE_LIBSCI_ACC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci_acc/17.03.1/@PRGENV@/@PE_LIBSCI_ACC_DEFAULT_GENCOMPS@/@PE_LIBSCI_ACC_DEFAULT_TARGET@/lib/pkgconfig PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL:PE_MPICH ARCHIVE_HOME=/erdc1/tmondrag PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=8.6 HOSTNAME=onyx01.erdc.hpc.mil PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl PETSC_ARCH=arch-moose PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=160 MACHTYPE=x86_64-suse-linux PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY INTEL BASH_FUNC_module%%=() { eval `/opt/cray/pe/modules/3.2.10.6/bin/modulecmd bash $*` } CRAY_MPICH_DIR=/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1 MINICOM=-c on PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_MPICH_NV_LIBS= PKGCONFIG_ENABLED=1 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_skylake=8.6 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=51 49 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.1 PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=51 49 DVS_VERSION=0.9.0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.6 LIBRARYMODULES=acml:alps:cray-dwarf:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-abi:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:libfast:netcdf:netcdf-hdf5parallel:ntk:onesided:papi:petsc:petsc-complex:pmi:tpsl:trilinos:xt-libsci:xt-mpich2:xt-mpt:xt-papi MODULESHOME=/opt/cray/pe/modules/3.2.10.6 PE_HUGEPAGES_PKGCONFIG_VARIABLES=PE_HUGEPAGES_TEXT_SEGMENT:PE_HUGEPAGES_PAGE_SIZE PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6 DAAC_HOME=/p/app/DAAC PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=86 GCC_VERSION=7.2.0 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=86 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_LIBSCI_GENCOMPS_CRAY_x86_64=86 PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx XDG_CONFIG_DIRS=/etc/xdg PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=8.6 PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.5 PE_NETCDF_DEFAULT_GENCOMPS_GNU=51 49 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=5.1 4.9 PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia20=nv20 PAGER=less PE_GA_DEFAULT_GENCOMPS_GNU=51 49 LIBGL_DEBUG=quiet CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pe/pmi/5.0.12/lib64 ATP_MRNET_COMM_PATH=/opt/cray/pe/atp/2.1.1/libexec/atp_mrnet_commnode_wrapper CRAY_MPICH2_VER=7.6.3 PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=16.0 LD_LIBRARY_PATH=/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/lib:/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/lib:/opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/lib64:/opt/gcc/7.2.0/snos/lib64 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64 PE_HUGEPAGES_TEXT_SEGMENT=0x20000000 F90=ftn ALLINEA_QUEUE_DLL=/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libtvmpich.so.3.0.1 LSTC_LICENSE_SERVER_PORT=1747 PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI CC=cc PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1 4.9 PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_skylake=86 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=51 49 PE_LIBSCI_VOLATILE_PRGENV=CRAY GNU INTEL GPG_TTY=/dev/pts/6 FROM_HEADER= LESSCLOSE=lessclose.sh %s %s PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.6.3/gni/mpich-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/lib64 PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=8.6 MORE=-sl PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.7/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_GNU_mic_knl=51 GNU_VERSION=7.2.0 HOSTTYPE=x86_64 CRAYPE_VERSION=2.5.13 CRAY_PRGENVGNU=loaded TERM=xterm-256color PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=16.0 PE_LIBSCI_ACC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_MPICH2_DIR=/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1 PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari/include PE_PKG_CONFIG_PATH=/opt/cray/pe/cti/1.0.6/lib/pkgconfig:/opt/cray/pe/cti/1.0.4/lib/pkgconfig:/opt/cray/pe/cti/1.0.2/lib/pkgconfig PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.8.1.3/CRAY/8.6/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.4.1.1.3/CRAY/8.6/lib/pkgconfig:/opt/cray/pe/netcdf/4.4.1.1.3/CRAY/8.6/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.0.3/CRAY/8.6/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.0.3/CRAY/8.6/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.7/CRAY/8.4/lib/pkgconfig CRAYPAT_OPTS_EXECUTABLE=sbin/pat-opts PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=16.0 LESSKEY=/etc/lesskey.bin PE_TPSL_64_DEFAULT_GENCOMPS_GNU_mic_knl=51 HUGETLB_FORCE_ELFMAP=yes+ PYTHONSTARTUP=/etc/pythonstart PWD=/p/home/tmondrag/WORK/moose/petsc PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_nvidia60=nv60 PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl=86 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=8.6 PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer CPPFLAGS=-I/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/include -I/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/include PE_LIBSCI_ACC_DEFAULT_GENCOMPILERS_GNU_x86_64=4.9 PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/17.11.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge BC_ACCELERATOR_NODE_CORES=22 SHELL=/bin/bash PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64 LESS_ADVANCED_PREPROCESSOR=no PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.6 PRGENVMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi DMAPP_ABORT_ON_ERROR=1 XDG_RUNTIME_DIR=/run/user/905790 PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.6 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.3 4.9 MPICH_ABORT_ON_ERROR=1 PE_ENV=GNU MPSCP_BLOCKED_FILE=/p/app/unsupported/local/etc/mpscp_blocked_ports PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:CRAYPE_BROADWELL:GNU:GCC:HUGETLB2M:PERFTOOLS:CRAYPAT PE_MPICH_VOLATILE_PRGENV=CRAY GNU PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=86 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=53 49 SDK_HOME=/usr/lib64/jvm/java CXX=CC PE_MPICH_GENCOMPILERS_CRAY=8.6 PE_MPICH_GENCOMPS_CRAY=86 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/lib64 -lrca PE_MPICH_TARGET_VAR_nvidia20=-lcudart MAIL=/var/mail/tmondrag SSH_CONNECTION=134.164.188.51 55206 140.31.13.101 22 TOOLMODULES=apprentice:apprentice2:atp:chapel:cray-lgdb:cray-snplauncher:craypat:craypkg-gen:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview PE_MPICH_DIR_CRAY_DEFAULT64=64 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=5.1 4.9 PE_LIBSCI_ACC_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_ACC_DEFAULT_NV_SUFFIX_@accelerator@ PE_LIBSCI_ACC_DEFAULT_GENCOMPS_GNU_x86_64=49 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=86 CENTER=/gpfs/cwfs/tmondrag PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=51 49 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/include PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI_ACC:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW CRAYPAT_ALPS_COMPONENT=/opt/cray/pe/perftools/6.5.2/sbin/pat_alps JAVA_PATH=/opt/java/jdk1.8.0_152 PKG_CONFIG_PATH=/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/lib/pkgconfig:/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/lib/pkgconfig:/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/lib64/pkgconfig:/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/lib64/pkgconfig:/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/lib64/pkgconfig:/opt/cray/gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari/lib64/pkgconfig:/opt/cray/dmapp/7.1.1-6.0.7.1_6.2__g45d1b37.ari/lib64/pkgconfig:/opt/cray/pe/pmi/5.0.12/lib64/pkgconfig:/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/lib64/pkgconfig:/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/lib64/pkgconfig:/opt/cray/pe/craype/2.5.13/pkg-config:/opt/cray/pe/iobuf/2.0.8/lib/pkgconfig:/opt/cray/pe/atp/2.1.1/lib/pkgconfig CRAY_MPICH_ROOTDIR=/opt/cray/pe/mpt/7.6.3 XNLSPATH=/usr/share/X11/nls _=./configure BC_HOST=onyx VALGRINDMPI_HOME=/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt JAVA_VERSION=jdk1.8.0_152 WINDOWMANAGER= PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=51 49 PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.1.1-6.0.7.1_6.2__g45d1b37.ari/include -I/opt/cray/gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari/include ACCOUNT=ERDCV00898ERS CRAYPAT_ROOT=/opt/cray/pe/perftools/6.5.2 G_BROKEN_FILENAMES=1 PE_MPICH_ALTERNATE_LIBS_dpm=_dpm QT_SYSTEM_DIR=/usr/share/desktop-data PE_MPICH_NV_LIBS_nvidia20=-lcudart DISPLAY=140.31.13.101:29.0 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_skylake=16.0 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY INTEL PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.6.3/gni/mpich-intel/16.0/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=160 PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OSTYPE=linux PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=51 49 BC_CORES_PER_NODE=44 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=160 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=16.0 PE_HDF5_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH gcc_already_loaded=0 F77=ftn PE_MPICH_GENCOMPS_GNU=51 49 CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/include -I/opt/cray/krca/2.2.4-6.0.7.1_5.44__g8505b97.ari/include -I/opt/cray-hss-devel/8.0.0/include EPROXY_LOGIN=onet1 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PROJECTS_HOME=/p/app/unsupported PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64=86 PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_skylake=61 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=86 INPUTRC=/etc/inputrc HUGETLB_MORECORE=yes PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_mic_knl=16.0 TZ=US/Central PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/17.06.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=16.0 PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY GNU PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64 PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_LIBSCI_OMP_REQUIRES_openmp=_mp PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 CRAY_SITE_LIST_DIR=/etc/opt/cray/pe/modules PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.1 RCLOCAL_PRGENV=true SPARK_EVENT_DIR=/p/home/tmondrag/.minerva/sparkHistory PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=5.3 4.9 WORKDIR=/p/work/tmondrag PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=51 49 PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME PE_PETSC_DEFAULT_GENCOMPS_INTEL_mic_knl=160 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/lib64 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1722) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1722) =============================================================================== ***** WARNING: CC (set to cc) found in environment variables - ignoring use ./configure CC=$CC if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: CXX (set to CC) found in environment variables - ignoring use ./configure CXX=$CXX if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: FC (set to ftn) found in environment variables - ignoring use ./configure FC=$FC if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: F77 (set to ftn) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: F90 (set to ftn) found in environment variables - ignoring use ./configure F90=$F90 if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: CPPFLAGS (set to -I/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/include -I/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/include) found in environment variables - ignoring use ./configure CPPFLAGS=$CPPFLAGS if you really want to use that value ****** =============================================================================== LDFLAGS (set to -L/p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/lib -L/p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/lib) found in environment variables - ignoring since also set on command line ================================================================================ TEST checkEnvCompilers from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1752) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1752) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1685) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1685) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1706) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1706) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:450) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:450) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to -dynamic Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to -dynamic Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to -dynamic Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to -dynamic Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:620) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:620) Locate a functional C compiler Executing: cc -craype-verbose stdout: gcc -march=broadwell -static -D__CRAYXC -D__CRAY_BROADWELL -D__CRAYXT_COMPUTE_LINUX_TARGET -upthread_mutex_destroy -D__TARGET_LINUX__ -I/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64/include -I/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/include -I/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/include -I/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/include -I/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/include -I/opt/cray/gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.12/include -I/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/include -I/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/include -I/opt/cray/wlm_detect/1.3.3-6.0.7.1_5.6__g7109084.ari/include -I/opt/cray/krca/2.2.4-6.0.7.1_5.44__g8505b97.ari/include -I/opt/cray-hss-devel/8.0.0/include -L/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib -L/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/lib64 -L/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/lib64 -L/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/lib64 -L/opt/cray/pe/pmi/5.0.12/lib64 -L/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/lib64 -L/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/lib64 -L/opt/cray/pe/atp/2.1.1/libApp -L/opt/cray/wlm_detect/1.3.3-6.0.7.1_5.6__g7109084.ari/lib64 -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lpthread -Wl,-Ttext-segment=0x20000000,-zmax-page-size=0x20000000 -Wl,--whole-archive,-lhugetlbfs,--no-whole-archive -lsci_gnu_61_mpi -lsci_gnu_61 -lpthread -lhugetlbfs -lmpich_gnu_51 -lrt -lugni -lpthread -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lxpmem -lugni -lpthread -ludreg -Wl,--as-needed,-lgfortran,-lquadmath,--no-as-needed -Wl,--as-needed,-lm,--no-as-needed -Wl,--as-needed,-lpthread,--no-as-needed Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/cc...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/cc...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/cc...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/cc...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/cc...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/cc...not found Checking for program /opt/pbs/default/bin/cc...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/cc...not found Checking for program /opt/java/jdk1.8.0_152/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/cc...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/cc...found Defined make macro "CC" to "cc" All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.setCompilers Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Testing executable /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest Executing: cc --version stdout: gcc (GCC) 7.2.0 20170814 (Cray Inc.) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCPreprocessor from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:657) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:657) Locate a functional C preprocessor Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/cc...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/cc...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/cc...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/cc...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/cc...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/cc...not found Checking for program /opt/pbs/default/bin/cc...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/cc...not found Checking for program /opt/java/jdk1.8.0_152/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/cc...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/cc...found Defined make macro "CPP" to "cc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCUDACompiler from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:695) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:695) Locate a functional CUDA compiler Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/nvcc...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/nvcc...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/nvcc...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/nvcc...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/nvcc...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/nvcc...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/nvcc...not found Checking for program /usr/local/krb5/bin/nvcc...not found Checking for program /usr/local/krb5/openssl/bin/nvcc...not found Checking for program /usr/local/krb5/bin/nvcc...not found Checking for program /usr/local/krb5/openssl/bin/nvcc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/nvcc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/nvcc...not found Checking for program /opt/pbs/default/bin/nvcc...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/nvcc...not found Checking for program /opt/java/jdk1.8.0_152/bin/nvcc...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/nvcc...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/nvcc...not found Checking for program /opt/gcc/7.2.0/bin/nvcc...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/bin/X11/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/lib/mit/bin/nvcc...not found Checking for program /usr/lib/mit/sbin/nvcc...not found Checking for program /opt/pbs/bin/nvcc...not found Checking for program /opt/cray/pe/bin/nvcc...not found Checking for program /pbs/SLB/nvcc...not found Checking for program /usr/local/man/nvcc...not found Checking for program /p/app/unsupported/local/bin/nvcc...not found Checking for program /usr/local/applic/COTS/nvcc...not found Checking for program /app/mpiutil/nvcc...not found Checking for program /pbs/SLB/nvcc...not found Checking for program /usr/local/man/nvcc...not found Checking for program /p/app/unsupported/local/bin/nvcc...not found Checking for program /usr/local/applic/COTS/nvcc...not found Checking for program /app/mpiutil/nvcc...not found Checking for program /p/home/tmondrag/WORK/moose/scripts/../petsc/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /p/home/tmondrag/WORK/moose/scripts/../petsc/lib/petsc/bin/win32fe/nvcc...not found Checking for program /usr/local/cuda/bin/nvcc...found Defined make macro "CUDAC" to "/usr/local/cuda/bin/nvcc" Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/cuda/bin/nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2018 NVIDIA Corporation Built on Tue_Jun_12_23:07:04_CDT_2018 Cuda compilation tools, release 9.2, V9.2.148 ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional CUDA preprocessor Checking for program /usr/local/cuda/bin/nvcc...found Defined make macro "CUDAPP" to "/usr/local/cuda/bin/nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: /usr/local/cuda/bin/nvcc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCxxCompiler from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:835) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:835) Locate a functional Cxx compiler Executing: CC -craype-verbose stdout: g++ -march=broadwell -static -D__CRAYXC -D__CRAY_BROADWELL -D__CRAYXT_COMPUTE_LINUX_TARGET -upthread_mutex_destroy -D__TARGET_LINUX__ -I/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64/include -I/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/include -I/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/include -I/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/include -I/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/include -I/opt/cray/gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.12/include -I/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/include -I/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/include -I/opt/cray/wlm_detect/1.3.3-6.0.7.1_5.6__g7109084.ari/include -I/opt/cray/krca/2.2.4-6.0.7.1_5.44__g8505b97.ari/include -I/opt/cray-hss-devel/8.0.0/include -L/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib -L/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/lib64 -L/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/lib64 -L/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/lib64 -L/opt/cray/pe/pmi/5.0.12/lib64 -L/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/lib64 -L/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/lib64 -L/opt/cray/pe/atp/2.1.1/libApp -L/opt/cray/wlm_detect/1.3.3-6.0.7.1_5.6__g7109084.ari/lib64 -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lpthread -Wl,-Ttext-segment=0x20000000,-zmax-page-size=0x20000000 -Wl,--whole-archive,-lhugetlbfs,--no-whole-archive -lsci_gnu_61_mpi -lsci_gnu_61 -lpthread -lhugetlbfs -lmpichcxx_gnu_51 -lrt -lugni -lpthread -lpmi -lmpich_gnu_51 -lrt -lugni -lpthread -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lugni -lpthread -lxpmem -ludreg -Wl,--as-needed,-lgfortran,-lquadmath,--no-as-needed -Wl,--as-needed,-lm,--no-as-needed -Wl,--as-needed,-lpthread,--no-as-needed Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/CC...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/CC...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/CC...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/CC...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/CC...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/CC...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/CC...not found Checking for program /usr/local/krb5/bin/CC...not found Checking for program /usr/local/krb5/openssl/bin/CC...not found Checking for program /usr/local/krb5/bin/CC...not found Checking for program /usr/local/krb5/openssl/bin/CC...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/CC...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/CC...not found Checking for program /opt/pbs/default/bin/CC...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/CC...not found Checking for program /opt/java/jdk1.8.0_152/bin/CC...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/CC...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/CC...found Defined make macro "CXX" to "CC" Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Testing executable /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest Executing: CC --version stdout: g++ (GCC) 7.2.0 20170814 (Cray Inc.) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:877) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:877) Locate a functional Cxx preprocessor Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/CC...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/CC...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/CC...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/CC...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/CC...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/CC...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/CC...not found Checking for program /usr/local/krb5/bin/CC...not found Checking for program /usr/local/krb5/openssl/bin/CC...not found Checking for program /usr/local/krb5/bin/CC...not found Checking for program /usr/local/krb5/openssl/bin/CC...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/CC...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/CC...not found Checking for program /opt/pbs/default/bin/CC...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/CC...not found Checking for program /opt/java/jdk1.8.0_152/bin/CC...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/CC...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/CC...found Defined make macro "CXXPP" to "CC -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: CC -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkFortranCompiler from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:980) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:980) Locate a functional Fortran compiler Executing: ftn -craype-verbose stdout: gfortran -march=broadwell -static -D__CRAYXC -D__CRAY_BROADWELL -D__CRAYXT_COMPUTE_LINUX_TARGET -upthread_mutex_destroy -D__TARGET_LINUX__ -I/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64/include -I/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/include -I/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/include -I/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/include -I/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/include -I/opt/cray/gni-headers/5.0.12.0-6.0.7.1_3.11__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.12/include -I/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/include -I/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/include -I/opt/cray/wlm_detect/1.3.3-6.0.7.1_5.6__g7109084.ari/include -I/opt/cray/krca/2.2.4-6.0.7.1_5.44__g8505b97.ari/include -I/opt/cray-hss-devel/8.0.0/include -L/opt/cray/pe/libsci/17.11.1/GNU/6.1/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib -L/opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/lib64 -L/opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/lib64 -L/opt/cray/xpmem/2.2.15-6.0.7.1_5.11__g7549d06.ari/lib64 -L/opt/cray/pe/pmi/5.0.12/lib64 -L/opt/cray/ugni/6.0.14.0-6.0.7.1_3.13__gea11d3d.ari/lib64 -L/opt/cray/udreg/2.3.2-6.0.7.1_5.13__g5196236.ari/lib64 -L/opt/cray/pe/atp/2.1.1/libApp -L/opt/cray/wlm_detect/1.3.3-6.0.7.1_5.6__g7109084.ari/lib64 -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lpthread -Wl,-Ttext-segment=0x20000000,-zmax-page-size=0x20000000 -Wl,--whole-archive,-lhugetlbfs,--no-whole-archive -lsci_gnu_61_mpi -lsci_gnu_61 -lpthread -lhugetlbfs -lmpichf90_gnu_51 -lrt -lugni -lpthread -lpmi -lmpich_gnu_51 -lrt -lugni -lpthread -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lugni -lpthread -lxpmem -ludreg -Wl,--as-needed,-lgfortran,-lquadmath,--no-as-needed -Wl,--as-needed,-lpthread,--no-as-needed Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/ftn...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/ftn...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/ftn...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/ftn...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/ftn...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/ftn...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/ftn...not found Checking for program /usr/local/krb5/bin/ftn...not found Checking for program /usr/local/krb5/openssl/bin/ftn...not found Checking for program /usr/local/krb5/bin/ftn...not found Checking for program /usr/local/krb5/openssl/bin/ftn...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/ftn...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/ftn...not found Checking for program /opt/pbs/default/bin/ftn...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/ftn...not found Checking for program /opt/java/jdk1.8.0_152/bin/ftn...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/ftn...found Defined make macro "FC" to "ftn" Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Testing executable /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest Executing: ftn --version stdout: GNU Fortran (GCC) 7.2.0 20170814 (Cray Inc.) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1017) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1017) Locate a functional Fortran preprocessor Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/ftn...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/ftn...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/ftn...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/ftn...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/ftn...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/ftn...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/ftn...not found Checking for program /usr/local/krb5/bin/ftn...not found Checking for program /usr/local/krb5/openssl/bin/ftn...not found Checking for program /usr/local/krb5/bin/ftn...not found Checking for program /usr/local/krb5/openssl/bin/ftn...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/ftn...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/ftn...not found Checking for program /opt/pbs/default/bin/ftn...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/ftn...not found Checking for program /opt/java/jdk1.8.0_152/bin/ftn...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/ftn...found Defined make macro "FPP" to "ftn -E" Deleting "FPP" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/ftn...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/ftn...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/ftn...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/ftn...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/ftn...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/ftn...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/ftn...not found Checking for program /usr/local/krb5/bin/ftn...not found Checking for program /usr/local/krb5/openssl/bin/ftn...not found Checking for program /usr/local/krb5/bin/ftn...not found Checking for program /usr/local/krb5/openssl/bin/ftn...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/ftn...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/ftn...not found Checking for program /opt/pbs/default/bin/ftn...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/ftn...not found Checking for program /opt/java/jdk1.8.0_152/bin/ftn...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/ftn...found Defined make macro "FPP" to "ftn --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1040) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1040) Make sure fortran comment "!" works Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1171) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1171) ================================================================================ TEST checkArchiver from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1270) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1270) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.31.1.20180828-9.26 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.31.1.20180828-9.26 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/ar...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/ar...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/ar...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/ar...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/ar...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/ar...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/ar...not found Checking for program /usr/local/krb5/bin/ar...not found Checking for program /usr/local/krb5/openssl/bin/ar...not found Checking for program /usr/local/krb5/bin/ar...not found Checking for program /usr/local/krb5/openssl/bin/ar...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/ar...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/ar...not found Checking for program /opt/pbs/default/bin/ar...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/ar...not found Checking for program /opt/java/jdk1.8.0_152/bin/ar...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/ar...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/ar...not found Checking for program /opt/gcc/7.2.0/bin/ar...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/ranlib...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/ranlib...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/ranlib...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/ranlib...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/ranlib...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/ranlib...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/ranlib...not found Checking for program /usr/local/krb5/bin/ranlib...not found Checking for program /usr/local/krb5/openssl/bin/ranlib...not found Checking for program /usr/local/krb5/bin/ranlib...not found Checking for program /usr/local/krb5/openssl/bin/ranlib...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/ranlib...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/ranlib...not found Checking for program /opt/pbs/default/bin/ranlib...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/ranlib...not found Checking for program /opt/java/jdk1.8.0_152/bin/ranlib...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/ranlib...not found Checking for program /opt/gcc/7.2.0/bin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconf1.a /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.31.1.20180828-9.26 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.31.1.20180828-9.26 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/ar...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/ar...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/ar...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/ar...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/ar...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/ar...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/ar...not found Checking for program /usr/local/krb5/bin/ar...not found Checking for program /usr/local/krb5/openssl/bin/ar...not found Checking for program /usr/local/krb5/bin/ar...not found Checking for program /usr/local/krb5/openssl/bin/ar...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/ar...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/ar...not found Checking for program /opt/pbs/default/bin/ar...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/ar...not found Checking for program /opt/java/jdk1.8.0_152/bin/ar...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/ar...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/ar...not found Checking for program /opt/gcc/7.2.0/bin/ar...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/ranlib...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/ranlib...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/ranlib...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/ranlib...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/ranlib...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/ranlib...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/ranlib...not found Checking for program /usr/local/krb5/bin/ranlib...not found Checking for program /usr/local/krb5/openssl/bin/ranlib...not found Checking for program /usr/local/krb5/bin/ranlib...not found Checking for program /usr/local/krb5/openssl/bin/ranlib...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/ranlib...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/ranlib...not found Checking for program /opt/pbs/default/bin/ranlib...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/ranlib...not found Checking for program /opt/java/jdk1.8.0_152/bin/ranlib...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/ranlib...not found Checking for program /opt/gcc/7.2.0/bin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconf1.a /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconf1.a Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -L/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1384) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1384) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker cc using flags ['-shared'] Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/cc...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/cc...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/cc...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/cc...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/cc...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/cc...not found Checking for program /opt/pbs/default/bin/cc...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/cc...not found Checking for program /opt/java/jdk1.8.0_152/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/cc...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/cc...found Defined make macro "LD_SHARED" to "cc" Trying C compiler flag Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -shared /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Valid C linker flag -shared Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: Warning: -dynamic was already seen on command line, overriding with -shared. /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: nonrepresentable section on output collect2: error: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker cc using flags ['-shared'] Executing: cc --help | head -n 20 stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]custom-ld-script[=script] Controls whether or not CrayPE attempts to pass ld a custom linker script. If a script is provided, it will be used. Otherwise, a Trying C compiler flag -PIC Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -PIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to nonzero status from link Rejecting compiler flag -PIC due to gcc: error: unrecognized command line option '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejected C compiler flag -PIC because it was not compatible with shared linker cc using flags ['-shared'] Trying C compiler flag -fPIC Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Valid C linker flag -shared Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -L/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -lconftest Using shared linker cc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1118) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1118) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: Warning: -dynamic was already seen on command line, overriding with -shared. /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: nonrepresentable section on output collect2: error: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Executing: CC --help | head -n 20 stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]custom-ld-script[=script] Controls whether or not CrayPE attempts to pass ld a custom linker script. If a script is provided, it will be used. Otherwise, a Trying Cxx compiler flag -PIC for PIC code Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -PIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: g++: error: unrecognized command line option '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to nonzero status from link Rejecting compiler flag -PIC due to g++: error: unrecognized command line option '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Accepted Cxx compiler flag -fPIC for PIC code Trying FC for PIC code without any compiler flag Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: Warning: -dynamic was already seen on command line, overriding with -shared. /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o: relocation R_X86_64_32 against undefined symbol `xx_' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: nonrepresentable section on output collect2: error: ld returned 1 exit status Rejected FC compiler flag because shared linker cannot handle it Executing: ftn --help | head -n 20 stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]custom-ld-script[=script] Controls whether or not CrayPE attempts to pass ld a custom linker script. If a script is provided, it will be used. Otherwise, a Trying FC compiler flag -PIC for PIC code Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -PIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-PIC'; did you mean '-fPIC'? Source: program main end Rejecting compiler flag -PIC due to nonzero status from link Rejecting compiler flag -PIC due to gfortran: error: unrecognized command line option '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejected FC compiler flag -PIC because shared linker cannot handle it Trying FC compiler flag -fPIC for PIC code Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Accepted FC compiler flag -fPIC for PIC code Trying CUDA for PIC code without any compiler flag Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: Warning: -dynamic was already seen on command line, overriding with -shared. /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: nonrepresentable section on output collect2: error: ld returned 1 exit status Rejected CUDA compiler flag because shared linker cannot handle it Trying CUDA compiler flag -Xcompiler -fPIC for PIC code Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added CUDA compiler flag -Xcompiler -fPIC Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Accepted CUDA compiler flag -Xcompiler -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1496) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1496) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: cc -V Trying C linker flag -Wl,-rpath, Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -Wl,-rpath,/p/work/tmondrag/moose/petsc -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/p/work/tmondrag/moose/petsc Executing: uname -s stdout: Linux Executing: cc -V Trying Cxx linker flag -Wl,-rpath, Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -Wl,-rpath,/p/work/tmondrag/moose/petsc /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/p/work/tmondrag/moose/petsc Executing: uname -s stdout: Linux Executing: cc -V Trying FC linker flag -Wl,-rpath, Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -Wl,-rpath,/p/work/tmondrag/moose/petsc -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/p/work/tmondrag/moose/petsc Executing: uname -s stdout: Linux Executing: cc -V Trying CUDA linker flag -Wl,-rpath, Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/cuda/bin/nvcc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -Xcompiler -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/p/work/tmondrag/moose/petsc ================================================================================ TEST checkLibC from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1531) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1531) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1577) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1577) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.libraries Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker cc using flags ['-shared'] Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/cc...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/cc...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/cc...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/cc...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/cc...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /usr/local/krb5/bin/cc...not found Checking for program /usr/local/krb5/openssl/bin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/cc...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/cc...not found Checking for program /opt/pbs/default/bin/cc...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/cc...not found Checking for program /opt/java/jdk1.8.0_152/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/cc...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/cc...found Defined make macro "DYNAMICLINKER" to "cc" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Valid C linker flag -shared Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so -dynamic -shared -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: Warning: -dynamic was already seen on command line, overriding with -shared. Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/p/work/tmondrag/petsc-0ciMsv/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest -dynamic -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -ldl Using dynamic linker cc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/setCompilers.py:1626) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1626) Output module data as defines and substitutions Substituting "CC" with "cc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "cc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "/usr/local/cuda/bin/nvcc" Substituting "CUDAFLAGS" with " -Xcompiler -fPIC" Substituting "CUDAPP" with "/usr/local/cuda/bin/nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "CC" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "CC -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "ftn" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "-dynamic" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 31.231890 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/p/work/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/p/work/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/p/work/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:94) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/p/work/tmondrag/moose/petsc/config/PETSc/options/sharedLibraries.py:100) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.008520 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/p/work/tmondrag/moose/petsc/config/PETSc/options/indexTypes.py:30) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:30) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.000879 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 7.2.0 20170814 (Cray Inc.)" Defined make macro "MPICC_SHOW" to "Unavailable" Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -O Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Defined make macro "Cxx_VERSION" to "g++ (GCC) 7.2.0 20170814 (Cray Inc.)" Defined make macro "MPICXX_SHOW" to "Unavailable" Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -O Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 7.2.0 20170814 (Cray Inc.)" Defined make macro "MPIFC_SHOW" to "Unavailable" Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -O Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Defined make macro "MPICC_SHOW" to "Unavailable" Defined make macro "MPICC_SHOW" to "Unavailable" Trying CUDA compiler flag -O Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -O -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added CUDA compiler flag -O child config.compilerFlags 3.372928 ================================================================================ TEST checkRestrict from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:138) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:138) Check for the C/CXX restrict keyword Executing: cc -V All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.compilers Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:391) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:391) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C inline keyword Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:402) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:402) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:202) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:202) Determines the libraries needed to link with C compiled code Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1343) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1343) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O -MMD -MP /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC -MMD -MP /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying CUDA compiler flag -MMD -MP Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Rejected CUDA compiler flag -MMD Trying CUDA compiler flag -xMMD Rejected CUDA compiler flag -xMMD Trying CUDA compiler flag -qmakedep=gcc Rejected CUDA compiler flag -qmakedep=gcc Trying CUDA compiler flag -MD Rejected CUDA compiler flag -MD Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -O -MMD -MP -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -O -MMD -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -O -xMMD -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'xMMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -O -qmakedep=gcc -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'qmakedep' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Executing: /usr/local/cuda/bin/nvcc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -Xcompiler -fPIC -O -MD -Wno-deprecated-gpu-targets /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced ================================================================================ TEST checkC99Flag from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1388) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1388) Check for -std=c99 or equivalent flag Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Defined "HAVE_C99" to "1" ================================================================================ TEST checkRestrict from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:138) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:138) Check for the C/CXX restrict keyword Executing: cc -V Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:421) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:421) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:123) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:123) Check for C++ inline keyword Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:531) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:531) Determines the libraries needed to link with C++ from C and Fortran Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o: in function `asub()': conftest.cc:(.text+0x7): undefined reference to `__cxa_allocate_exception' /usr/bin/ld: conftest.cc:(.text+0x19): undefined reference to `typeinfo for int' /usr/bin/ld: conftest.cc:(.text+0x21): undefined reference to `__cxa_throw' /usr/bin/ld: conftest.cc:(.text+0x34): undefined reference to `__cxa_begin_catch' /usr/bin/ld: conftest.cc:(.text+0x42): undefined reference to `std::cout' /usr/bin/ld: conftest.cc:(.text+0x47): undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: conftest.cc:(.text+0x4c): undefined reference to `__cxa_end_catch' /usr/bin/ld: conftest.cc:(.text+0x56): undefined reference to `__cxa_end_catch' /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o: in function `_GLOBAL__sub_I_conftest.cc': conftest.cc:(.text+0x6e): undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: conftest.cc:(.text+0x83): undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status Executing: uname -s stdout: Linux Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker ================================================================================ TEST checkCxxDialect from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:449) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:449) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX11 with flag: Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Executing: CC -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:836) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:836) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: ftn --version stdout: GNU Fortran (GCC) 7.2.0 20170814 (Cray Inc.) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:877) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:877) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o: in function `main': conftest.F90:(.text+0x20): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status ================================================================================ TEST checkFortranLibraries from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:887) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:887) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 Fortran libraries are not needed when using C linker Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 Fortran libraries are not needed when using C++ linker ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1308) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1308) Check that Fortran can link C++ libraries Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilers/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/cxxobj.o /p/work/tmondrag/petsc-0ciMsv/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilers.py:1453) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1453) child config.compilers 12.636301 ================================================================================ TEST configureClosure from config.utilities.closure(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.utilities.closure Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.closure/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.utilities.closure/conftest.c: In function 'main': /p/work/tmondrag/petsc-0ciMsv/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.204949 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O -DTesting /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:159) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:159) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90:2:132: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 1 Error: Line truncated at (1) [-Werror=line-truncation] /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90:2:110: INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 1 Error: Unclassifiable statement at (1) f951: some warnings being treated as errors Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Compile failed inside link Fortran compiler does not support F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:173) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:173) Determine whether the Fortran compiler handles F2003 Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:208) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:208) Check for F90 array interfaces Executing: uname -s stdout: Linux Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest stdout: arrays [0x7ffc82535d90 0x7ffc82535d90 0x7ffc82535d90] arrays [0x7ffc82535d40 0x7ffc82535cf0 0x7ffc82535d40] pointers do not match! [0x7f51e4282740 0x7ffc82535d90] [(nil)] ERROR while running executable: Could not execute "['/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest']": arrays [0x7ffc82535d90 0x7ffc82535d90 0x7ffc82535d90] arrays [0x7ffc82535d40 0x7ffc82535cf0 0x7ffc82535d40] pointers do not match! [0x7f51e4282740 0x7ffc82535d90] [(nil)]libhugetlbfs [onyx01.erdc.hpc.mil:36499]: WARNING: Hugepage size 2097152 unavailable compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:295) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:295) Figures out what flag is used to specify the include path for Fortran modules Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest -dynamic -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:361) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:361) Figures out what flag is used to specify the include path for Fortran modules Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -module /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module'; did you mean '-mhle'? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -module:/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module:/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fmod=/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-fmod=/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -J/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/confdir -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ================================================================================ TEST checkFortranTypeInitialize from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:125) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ================================================================================ TEST configureFortranFlush from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:116) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilersFortran(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/compilersFortran.py:406) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:406) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O -MMD -MP /p/work/tmondrag/petsc-0ciMsv/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 4.220074 ================================================================================ TEST checkStdC from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.o -lstdc++ -ldl Testing executable /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include ^~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory #include ^~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory #include ^~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Direct.h: No such file or directory #include ^~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory #include ^~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory #include ^~~~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~compilation terminated.: ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~compilation terminated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 11.931106 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails 1.043176 ================================================================================ TEST check_struct_sigaction from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.types Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c: In function 'main': /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest -dynamic -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkFortranKind from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:114) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:114) Checks whether selected_int_kind etc work USE_FORTRANKIND Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.F90 Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" ================================================================================ TEST checkConst from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:126) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:126) Checks for working const, and if not found defines it to empty string Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/types.py:213) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:213) Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 7.380320 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/p/work/tmondrag/moose/petsc/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001293 ================================================================================ TEST check from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST checkMath from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl CheckMath: using math library [] ================================================================================ TEST checkMathErf from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:301) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:309) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:309) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:318) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:318) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:334) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:334) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" child config.libraries 5.198400 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/p/work/tmondrag/moose/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Executing: cc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/p/work/tmondrag/moose/petsc/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 1.314456 child config.atomics 0.000013 ================================================================================ TEST checkSysinfo from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.functions Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~compilation terminated.: Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^~~~~ /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c: In function 'main': /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:13:30: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c: In function 'main': /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen drand48 socket popen getrusage _mkdir time stricmp] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Possible ERROR while running compiler: stderr: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' [-Wbuiltin-declaration-mismatch] char snprintf(); ^~~~~~~~ /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' [-Wbuiltin-declaration-mismatch] char bzero(); ^~~~~ /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:34:6: warning: conflicting types for built-in function 'fork' [-Wbuiltin-declaration-mismatch] char fork(); ^~~~ /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:43:6: warning: conflicting types for built-in function 'strcasecmp' [-Wbuiltin-declaration-mismatch] char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0x5a): warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: conftest.c:(.text+0x1e): undefined reference to `_access' /usr/bin/ld: conftest.c:(.text+0x50): undefined reference to `_getcwd' /usr/bin/ld: conftest.c:(.text+0x6e): undefined reference to `_lseek' /usr/bin/ld: conftest.c:(.text+0x82): undefined reference to `_sleep' /usr/bin/ld: conftest.c:(.text+0xc8): undefined reference to `_snprintf' /usr/bin/ld: conftest.c:(.text+0xf0): undefined reference to `sbreak' /usr/bin/ld: conftest.c:(.text+0x122): undefined reference to `_set_output_format' /usr/bin/ld: conftest.c:(.text+0x12c): undefined reference to `PXFGETARG' /usr/bin/ld: conftest.c:(.text+0x172): undefined reference to `_mkdir' /usr/bin/ld: conftest.c:(.text+0x186): undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Possible ERROR while running compiler: stderr: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' [-Wbuiltin-declaration-mismatch] char bzero(); ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Possible ERROR while running compiler: stderr: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'fork' [-Wbuiltin-declaration-mismatch] char fork(); ^~~~ /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:18:6: warning: conflicting types for built-in function 'strcasecmp' [-Wbuiltin-declaration-mismatch] char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Possible ERROR while running compiler: stderr: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' [-Wbuiltin-declaration-mismatch] char snprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [getwd] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `stricmp' collect2: error: ld returned 1 exit status ================================================================================ TEST checkMmap from config.functions(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 14.566152 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001544 ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.374859 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: sysctl.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.806061 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest -dynamic -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest -dynamic -O /p/work/tmondrag/petsc-0ciMsv/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 6.727474 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory #include ^~~~~~~~~~compilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory #include ^~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory #include ^~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory #include ^~~~~~~~~compilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/confdefs.h" 1 # 2 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 # 1 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conffix.h" 1 # 3 "/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c" 2 stderr: /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess stderr after filtering:/p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~compilation terminated.: child config.utilities.FPTrap 0.357071 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/p/work/tmondrag/moose/petsc/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -fPIC -O /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -fPIC -O /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -fPIC -O /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/p/work/tmondrag/moose/petsc/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" C compiler with quadmath library Checking Fortran works with quadmath library Checking for functions [ ] in library ['quadmath'] [] Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.F90 Successful compile: Source: program main real*16 s,w; w = 2.0 ;s = cos(w) end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Fortran works with quadmath library Checking for functions [logq] in library ['quadmath'] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Adding ['quadmath'] to LIBS Defined "HAVE_REAL___FLOAT128" to "1" Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.943433 ================================================================================ TEST configureMkdir from config.programs(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/mkdir...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/mkdir...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/mkdir...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/mkdir...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/mkdir...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/mkdir...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/mkdir...not found Checking for program /usr/local/krb5/bin/mkdir...not found Checking for program /usr/local/krb5/openssl/bin/mkdir...not found Checking for program /usr/local/krb5/bin/mkdir...not found Checking for program /usr/local/krb5/openssl/bin/mkdir...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/mkdir...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/mkdir...not found Checking for program /opt/pbs/default/bin/mkdir...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/mkdir...not found Checking for program /opt/java/jdk1.8.0_152/bin/mkdir...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/mkdir...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/mkdir...not found Checking for program /opt/gcc/7.2.0/bin/mkdir...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/autoreconf...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/autoreconf...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/autoreconf...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/autoreconf...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/autoreconf...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/autoreconf...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/autoreconf...not found Checking for program /usr/local/krb5/bin/autoreconf...not found Checking for program /usr/local/krb5/openssl/bin/autoreconf...not found Checking for program /usr/local/krb5/bin/autoreconf...not found Checking for program /usr/local/krb5/openssl/bin/autoreconf...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/autoreconf...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/autoreconf...not found Checking for program /opt/pbs/default/bin/autoreconf...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/autoreconf...not found Checking for program /opt/java/jdk1.8.0_152/bin/autoreconf...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/autoreconf...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/autoreconf...not found Checking for program /opt/gcc/7.2.0/bin/autoreconf...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.programs Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/libtoolize...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/libtoolize...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/libtoolize...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/libtoolize...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/libtoolize...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/libtoolize...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/libtoolize...not found Checking for program /usr/local/krb5/bin/libtoolize...not found Checking for program /usr/local/krb5/openssl/bin/libtoolize...not found Checking for program /usr/local/krb5/bin/libtoolize...not found Checking for program /usr/local/krb5/openssl/bin/libtoolize...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/libtoolize...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/libtoolize...not found Checking for program /opt/pbs/default/bin/libtoolize...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/libtoolize...not found Checking for program /opt/java/jdk1.8.0_152/bin/libtoolize...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/libtoolize...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/libtoolize...not found Checking for program /opt/gcc/7.2.0/bin/libtoolize...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/sh...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/sh...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/sh...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/sh...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/sh...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/sh...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/sh...not found Checking for program /usr/local/krb5/bin/sh...not found Checking for program /usr/local/krb5/openssl/bin/sh...not found Checking for program /usr/local/krb5/bin/sh...not found Checking for program /usr/local/krb5/openssl/bin/sh...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/sh...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/sh...not found Checking for program /opt/pbs/default/bin/sh...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/sh...not found Checking for program /opt/java/jdk1.8.0_152/bin/sh...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/sh...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/sh...not found Checking for program /opt/gcc/7.2.0/bin/sh...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/sed...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/sed...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/sed...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/sed...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/sed...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/sed...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/sed...not found Checking for program /usr/local/krb5/bin/sed...not found Checking for program /usr/local/krb5/openssl/bin/sed...not found Checking for program /usr/local/krb5/bin/sed...not found Checking for program /usr/local/krb5/openssl/bin/sed...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/sed...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/sed...not found Checking for program /opt/pbs/default/bin/sed...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/sed...not found Checking for program /opt/java/jdk1.8.0_152/bin/sed...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/sed...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/sed...not found Checking for program /opt/gcc/7.2.0/bin/sed...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/p/work/tmondrag/petsc-0ciMsv/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/mv...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/mv...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/mv...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/mv...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/mv...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/mv...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/mv...not found Checking for program /usr/local/krb5/bin/mv...not found Checking for program /usr/local/krb5/openssl/bin/mv...not found Checking for program /usr/local/krb5/bin/mv...not found Checking for program /usr/local/krb5/openssl/bin/mv...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/mv...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/mv...not found Checking for program /opt/pbs/default/bin/mv...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/mv...not found Checking for program /opt/java/jdk1.8.0_152/bin/mv...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/mv...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/mv...not found Checking for program /opt/gcc/7.2.0/bin/mv...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/cp...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/cp...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/cp...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/cp...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/cp...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/cp...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/cp...not found Checking for program /usr/local/krb5/bin/cp...not found Checking for program /usr/local/krb5/openssl/bin/cp...not found Checking for program /usr/local/krb5/bin/cp...not found Checking for program /usr/local/krb5/openssl/bin/cp...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/cp...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/cp...not found Checking for program /opt/pbs/default/bin/cp...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/cp...not found Checking for program /opt/java/jdk1.8.0_152/bin/cp...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/cp...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/cp...not found Checking for program /opt/gcc/7.2.0/bin/cp...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/grep...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/grep...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/grep...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/grep...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/grep...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/grep...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/grep...not found Checking for program /usr/local/krb5/bin/grep...not found Checking for program /usr/local/krb5/openssl/bin/grep...not found Checking for program /usr/local/krb5/bin/grep...not found Checking for program /usr/local/krb5/openssl/bin/grep...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/grep...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/grep...not found Checking for program /opt/pbs/default/bin/grep...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/grep...not found Checking for program /opt/java/jdk1.8.0_152/bin/grep...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/grep...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/grep...not found Checking for program /opt/gcc/7.2.0/bin/grep...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/rm...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/rm...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/rm...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/rm...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/rm...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/rm...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/rm...not found Checking for program /usr/local/krb5/bin/rm...not found Checking for program /usr/local/krb5/openssl/bin/rm...not found Checking for program /usr/local/krb5/bin/rm...not found Checking for program /usr/local/krb5/openssl/bin/rm...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/rm...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/rm...not found Checking for program /opt/pbs/default/bin/rm...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/rm...not found Checking for program /opt/java/jdk1.8.0_152/bin/rm...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/rm...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/rm...not found Checking for program /opt/gcc/7.2.0/bin/rm...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/diff...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/diff...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/diff...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/diff...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/diff...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/diff...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/diff...not found Checking for program /usr/local/krb5/bin/diff...not found Checking for program /usr/local/krb5/openssl/bin/diff...not found Checking for program /usr/local/krb5/bin/diff...not found Checking for program /usr/local/krb5/openssl/bin/diff...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/diff...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/diff...not found Checking for program /opt/pbs/default/bin/diff...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/diff...not found Checking for program /opt/java/jdk1.8.0_152/bin/diff...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/diff...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/diff...not found Checking for program /opt/gcc/7.2.0/bin/diff...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/p/work/tmondrag/petsc-0ciMsv/config.programs/diff1" "/p/work/tmondrag/petsc-0ciMsv/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /p/home/tmondrag/WORK/moose/scripts/../petsc/lib/petsc/bin/win32fe/ps...not found Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/m4...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/m4...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/m4...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/m4...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/m4...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/m4...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/m4...not found Checking for program /usr/local/krb5/bin/m4...not found Checking for program /usr/local/krb5/openssl/bin/m4...not found Checking for program /usr/local/krb5/bin/m4...not found Checking for program /usr/local/krb5/openssl/bin/m4...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/m4...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/m4...not found Checking for program /opt/pbs/default/bin/m4...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/m4...not found Checking for program /opt/java/jdk1.8.0_152/bin/m4...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/m4...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/m4...not found Checking for program /opt/gcc/7.2.0/bin/m4...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.569647 ================================================================================ TEST configureMake from config.packages.make(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:87) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:87) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.0 Built for x86_64-unknown-linux-gnu Copyright (C) 1988-2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/gmake...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/gmake...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/gmake...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/gmake...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/gmake...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/gmake...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/gmake...not found Checking for program /usr/local/krb5/bin/gmake...not found Checking for program /usr/local/krb5/openssl/bin/gmake...not found Checking for program /usr/local/krb5/bin/gmake...not found Checking for program /usr/local/krb5/openssl/bin/gmake...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/gmake...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/gmake...not found Checking for program /opt/pbs/default/bin/gmake...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/gmake...not found Checking for program /opt/java/jdk1.8.0_152/bin/gmake...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/gmake...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/gmake...not found Checking for program /opt/gcc/7.2.0/bin/gmake...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" ================================================================================ TEST setupGNUMake from config.packages.make(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ================================================================================ TEST configureMakeNP from config.packages.make(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 44 cores: using make_np = 30 Defined make macro "MAKE_NP" to "30" Defined make macro "MAKE_TEST_NP" to "20" Defined make macro "MAKE_LOAD" to "66.0" Defined make macro "NPMAX" to "44" child config.packages.make 0.055166 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/package.py:913) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:913) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000996 Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/package.py:913) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:913) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.007595 ================================================================================ TEST checkDependencies from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/package.py:830) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:830) ================================================================================ TEST configureLibrary from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:581) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:581) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ================================================================================ TEST check from config.libraries(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl No functions to check for in library [] [] Checking for headers Compiler specific search MPI: [] ================================================================================ TEST checkInclude from config.headers(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in [] ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:468) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:468) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c:4:25: error: 'I_MPI_VERSION' undeclared here (not in a function); did you mean 'MPI_VERSION'? const char *mpich_ver = I_MPI_VERSION; ^~~~~~~~~~~~~ MPI_VERSION Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c:4:17: error: 'I_MPI_NUMVERSION' undeclared here (not in a function); did you mean 'MPI_SUBVERSION'? int mpich_ver = I_MPI_NUMVERSION; ^~~~~~~~~~~~~~~~ MPI_SUBVERSION Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c:4:17: error: 'MVAPICH2_NUMVERSION' undeclared here (not in a function); did you mean 'MPICH_NUMVERSION'? int mpich_ver = MVAPICH2_NUMVERSION; ^~~~~~~~~~~~~~~~~~~ MPICH_NUMVERSION Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: cc -E -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -I/p/work/tmondrag/petsc-0ciMsv/config.headers /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30200300" Executing: uname -s stdout: Linux ================================================================================ TEST configureMPI2 from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:250) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:250) Check for functions added to the interface in MPI-2 Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:292) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:292) Check for functions added to the interface in MPI-3 Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ================================================================================ TEST configureMPITypes from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:335) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:335) Checking for MPI Datatype handles Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest ERROR while running executable: Could not execute "['/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest']": libhugetlbfs [onyx01.erdc.hpc.mil:42950]: WARNING: Hugepage size 2097152 unavailablelibhugetlbfs [onyx01.erdc.hpc.mil:42950]: WARNING: New heap segment map at 0x10000000000 failed: Cannot allocate memory [Wed Dec 18 13:03:32 2019] [unknown] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(537): MPID_Init(249).......: channel initialization failed MPID_Init(638).......: PMI2 init failed: 1 Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest ERROR while running executable: Could not execute "['/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest']": libhugetlbfs [onyx01.erdc.hpc.mil:42997]: WARNING: Hugepage size 2097152 unavailablelibhugetlbfs [onyx01.erdc.hpc.mil:42997]: WARNING: New heap segment map at 0x10000000000 failed: Cannot allocate memory [Wed Dec 18 13:03:33 2019] [unknown] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(537): MPID_Init(249).......: channel initialization failed MPID_Init(638).......: PMI2 init failed: 1 Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest to see if it can be run Executing: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest Executing: /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest ERROR while running executable: Could not execute "['/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest']": libhugetlbfs [onyx01.erdc.hpc.mil:43045]: WARNING: Hugepage size 2097152 unavailablelibhugetlbfs [onyx01.erdc.hpc.mil:43045]: WARNING: New heap segment map at 0x10000000000 failed: Cannot allocate memory [Wed Dec 18 13:03:34 2019] [unknown] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(537): MPID_Init(249).......: channel initialization failed MPID_Init(638).......: PMI2 init failed: 1 ================================================================================ TEST SGIMPICheck from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:396) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:396) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o: in function `main': conftest.c:(.text+0xa): undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:406) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:406) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Executing: CC -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -O -fPIC /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: CC -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:422) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:422) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 Checking for mpi.mod Checking for functions [] in library [] [] Executing: ftn -c -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: ftn -o /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/cray/pe/mpt/7.6.3/gni/mpich-gnu/5.1/lib/libmpich_gnu_51.so, may conflict with libgfortran.so.4 Defined "HAVE_MPI_F90MODULE" to "1" ================================================================================ TEST configureIO from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:444) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:444) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: cc -c -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -I/p/work/tmondrag/petsc-0ciMsv/config.compilers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.closure -I/p/work/tmondrag/petsc-0ciMsv/config.setCompilers -I/p/work/tmondrag/petsc-0ciMsv/config.compilersFortran -I/p/work/tmondrag/petsc-0ciMsv/config.headers -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.cacheDetails -I/p/work/tmondrag/petsc-0ciMsv/config.types -I/p/work/tmondrag/petsc-0ciMsv/config.functions -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.featureTestMacros -I/p/work/tmondrag/petsc-0ciMsv/config.utilities.missing -I/p/work/tmondrag/petsc-0ciMsv/PETSc.options.scalarTypes -I/p/work/tmondrag/petsc-0ciMsv/config.libraries -I/p/work/tmondrag/petsc-0ciMsv/config.packages.MPI -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: cc -o /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest -dynamic -fPIC -O /p/work/tmondrag/petsc-0ciMsv/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:522) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:522) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS Executing: cc -show ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:556) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:556) ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py:174) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:174) Checking for location of mpiexec Checking for program /p/app/unsupported/COST/valgrind-mpi/3.12.0/gnu/craympt/bin/aprun...not found Checking for program /p/app/unsupported/COST/petsc-cxx-real-mpi/3.7.4/gnu/craympt/bin/aprun...not found Checking for program /opt/cray/pe/perftools/6.5.2/bin/aprun...not found Checking for program /opt/cray/pe/papi/5.5.1.3/bin/aprun...not found Checking for program /opt/cray/rca/2.2.18-6.0.7.1_5.48__g2aa4f39.ari/bin/aprun...not found Checking for program /opt/cray/alps/6.6.43-6.0.7.1_5.46__ga796da32.ari/sbin/aprun...not found Checking for program /opt/cray/job/2.2.3-6.0.7.1_5.44__g6c4e934.ari/bin/aprun...not found Checking for program /usr/local/krb5/bin/aprun...not found Checking for program /usr/local/krb5/openssl/bin/aprun...not found Checking for program /usr/local/krb5/bin/aprun...not found Checking for program /usr/local/krb5/openssl/bin/aprun...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/sbin/aprun...not found Checking for program /opt/cray/ccm/2.5.4-6.0.7.1_5.27__g394754f.ari/bin/aprun...not found Checking for program /opt/pbs/default/bin/aprun...not found Checking for program /opt/cray/elogin/eproxy/2.0.22-6.0.7.1_7.5__g1ebe45c.ari/bin/aprun...not found Checking for program /opt/java/jdk1.8.0_152/bin/aprun...not found Checking for program /opt/cray/pe/mpt/7.6.3/gni/bin/aprun...not found Checking for program /opt/cray/pe/craype/2.5.13/bin/aprun...not found Checking for program /opt/gcc/7.2.0/bin/aprun...not found Checking for program /opt/cray/pe/modules/3.2.10.6/bin/aprun...not found Checking for program /usr/local/bin/aprun...not found Checking for program /usr/bin/aprun...not found Checking for program /bin/aprun...not found Checking for program /usr/bin/X11/aprun...not found Checking for program /usr/games/aprun...not found Checking for program /usr/lib/mit/bin/aprun...not found Checking for program /usr/lib/mit/sbin/aprun...not found Checking for program /opt/pbs/bin/aprun...not found Checking for program /opt/cray/pe/bin/aprun...not found Checking for program /pbs/SLB/aprun...not found Checking for program /usr/local/man/aprun...not found Checking for program /p/app/unsupported/local/bin/aprun...not found Checking for program /usr/local/applic/COTS/aprun...not found Checking for program /app/mpiutil/aprun...not found Checking for program /pbs/SLB/aprun...not found Checking for program /usr/local/man/aprun...not found Checking for program /p/app/unsupported/local/bin/aprun...not found Checking for program /usr/local/applic/COTS/aprun...not found Checking for program /app/mpiutil/aprun...not found Checking for program /p/home/tmondrag/WORK/moose/scripts/../petsc/lib/petsc/bin/win32fe/aprun...not found **** Configure header /p/work/tmondrag/petsc-0ciMsv/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define IS_COLORING_MAX USHRT_MAX #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_VERSION_BRANCH_GIT "(HEAD detached at 5ea3abfa7f)" #define PETSC_VERSION_DATE_GIT "2019-10-29 13:35:52 +0000" #define PETSC_VERSION_GIT "v3.12.1-23-g5ea3abfa7f" #define PETSC_HAVE_MPICH_NUMVERSION 30200300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_USE_PROC_FOR_SIZE 1 #endif **** C specific Configure header /p/work/tmondrag/petsc-0ciMsv/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Invalid mpiexec specified: aprun ******************************************************************************* File "/p/work/tmondrag/moose/petsc/config/configure.py", line 443, in petsc_configure framework.configure(out = sys.stdout) File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/framework.py", line 1190, in configure self.processChildren() File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/framework.py", line 1179, in processChildren self.serialEvaluation(self.childGraph) File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/framework.py", line 1154, in serialEvaluation child.configure() File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/package.py", line 1083, in configure self.executeTest(self.configureLibrary) File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py", line 604, in configureLibrary self.executeTest(self.configureMPIEXEC) File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/p/work/tmondrag/moose/petsc/config/BuildSystem/config/packages/MPI.py", line 186, in configureMPIEXEC raise RuntimeError('Invalid mpiexec specified: '+str(self.argDB['with-mpiexec'])) ================================================================================ Finishing configure run at Wed, 18 Dec 2019 13:03:37 -0600 ================================================================================