INFO [2017-01-20 20:26:48,648] [Main.java:134] Startup IGV Version 2.3.89 (142)12/22/2016 01:32 PM
INFO [2017-01-20 20:26:48,649] [Main.java:135] Java 1.8.0_74
INFO [2017-01-20 20:26:48,649] [Main.java:136] Default User Directory: C:\Users\Pavan\Documents
INFO [2017-01-20 20:26:48,650] [Main.java:137] OS: Windows 10
INFO [2017-01-20 20:26:49,460] [Main.java:439] Loading: https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a%2BiCEave81BbC%2BqfZibhEg%3D
INFO [2017-01-20 20:26:49,639] [IGVPreferences.java:198] Overriding preference: SAM.SHOW_SOFT_CLIPPED=true
INFO [2017-01-20 20:26:51,067] [GenomeManager.java:145] Loading genome: C:\Users\Pavan\igv\genomes\hg19.genome
INFO [2017-01-20 20:26:53,260] [GenomeManager.java:192] Genome loaded. id= hg19
INFO [2017-01-20 20:26:53,414] [IGV.java:1705] Loading 1 resources.
INFO [2017-01-20 20:26:53,416] [TrackLoader.java:126] Loading resource, path https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
INFO [2017-01-20 20:26:54,048] [HttpUtils.java:288] HEAD request failed for url: https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=. Trying GET
INFO [2017-01-20 20:26:54,306] [HttpUtils.java:288] HEAD request failed for url: https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=. Trying GET
ERROR [2017-01-20 20:26:54,456] [TrackLoader.java:270] An error occurred while accessing: https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
Index file not found. Tried
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
org.broad.igv.exceptions.DataLoadException: An error occurred while accessing: https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
Index file not found. Tried
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
at org.broad.igv.sam.reader.BAMHttpReader.getIndexStream(BAMHttpReader.java:204)
at org.broad.igv.sam.reader.BAMHttpReader.getSamReader(BAMHttpReader.java:92)
at org.broad.igv.sam.reader.BAMHttpReader.(BAMHttpReader.java:73)
at org.broad.igv.sam.reader.AlignmentReaderFactory.getReader(AlignmentReaderFactory.java:94)
at org.broad.igv.sam.reader.AlignmentReaderFactory.getReader(AlignmentReaderFactory.java:63)
at org.broad.igv.sam.AlignmentDataManager.(AlignmentDataManager.java:81)
at org.broad.igv.track.TrackLoader.loadAlignmentsTrack(TrackLoader.java:929)
at org.broad.igv.track.TrackLoader.load(TrackLoader.java:180)
at org.broad.igv.ui.IGV.load(IGV.java:1813)
at org.broad.igv.ui.IGV$13.run(IGV.java:1726)
at org.broad.igv.ui.IGV.loadResources(IGV.java:1739)
at org.broad.igv.ui.IGV$5.run(IGV.java:743)
at org.broad.igv.util.LongRunningTask.submit(LongRunningTask.java:57)
at org.broad.igv.ui.IGV.loadTracks(IGV.java:755)
at org.broad.igv.ui.IGV$StartupRunnable.run(IGV.java:2621)
at org.broad.igv.util.LongRunningTask.submit(LongRunningTask.java:57)
at org.broad.igv.ui.IGV.startUp(IGV.java:2463)
at org.broad.igv.ui.Main.open(Main.java:274)
at org.broad.igv.ui.Main.main(Main.java:94)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.javaws.Launcher.executeApplication(Unknown Source)
at com.sun.javaws.Launcher.executeMainClass(Unknown Source)
at com.sun.javaws.Launcher.doLaunchApp(Unknown Source)
at com.sun.javaws.Launcher.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
ERROR [2017-01-20 20:26:54,460] [IGV.java:1730] Error loading track
org.broad.igv.exceptions.DataLoadException: An error occurred while accessing: https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
Index file not found. Tried
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
at org.broad.igv.track.TrackLoader.load(TrackLoader.java:272)
at org.broad.igv.ui.IGV.load(IGV.java:1813)
at org.broad.igv.ui.IGV$13.run(IGV.java:1726)
at org.broad.igv.ui.IGV.loadResources(IGV.java:1739)
at org.broad.igv.ui.IGV$5.run(IGV.java:743)
at org.broad.igv.util.LongRunningTask.submit(LongRunningTask.java:57)
at org.broad.igv.ui.IGV.loadTracks(IGV.java:755)
at org.broad.igv.ui.IGV$StartupRunnable.run(IGV.java:2621)
at org.broad.igv.util.LongRunningTask.submit(LongRunningTask.java:57)
at org.broad.igv.ui.IGV.startUp(IGV.java:2463)
at org.broad.igv.ui.Main.open(Main.java:274)
at org.broad.igv.ui.Main.main(Main.java:94)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.javaws.Launcher.executeApplication(Unknown Source)
at com.sun.javaws.Launcher.executeMainClass(Unknown Source)
at com.sun.javaws.Launcher.doLaunchApp(Unknown Source)
at com.sun.javaws.Launcher.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
INFO [2017-01-20 20:26:54,464] [MessageUtils.java:74] Error loading https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=: An error occurred while accessing: https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
Index file not found. Tried
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bam.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
https://pdx-pavan.s3.amazonaws.com/IGV_Bug/main.clean.bai?AWSAccessKeyId=AKIAIK4GP43NHLYBC6LQ&Expires=1493597268&Signature=y4BE9a+iCEave81BbC+qfZibhEg=
INFO [2017-01-20 20:27:33,199] [CommandListener.java:106] Listening on port 60151
INFO [2017-01-20 20:27:33,386] [HttpUtils.java:833] Range-byte request succeeded
INFO [2017-01-20 20:27:34,838] [ShutdownThread.java:51] Shutting down