tomas@tomas-VirtualBox:~/workspace/hermes3p0-testing/hermes$ cmake . -- The C compiler identification is GNU 4.8.2 -- The CXX compiler identification is GNU 4.8.2 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Hermes will by default be using 4 threads for calculation. -- Performing Test BFD_WORKS -- Performing Test BFD_WORKS - Failed -- Found XSD: /usr/include -- Found XERCES: /usr/lib/i386-linux-gnu/libxerces-c.so -- Found UMFPACK: /usr/lib/i386-linux-gnu/libumfpack.so;/usr/lib/i386-linux-gnu/libsuitesparseconfig.a;/usr/lib/i386-linux-gnu/libamd.so -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- Looking for Fortran dgemm -- Looking for Fortran dgemm - found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Found GLUT: /usr/local/lib/libglut.so -- Found GLEW: /usr/lib/i386-linux-gnu/libGLEW.so -- Found PTHREAD: /usr/lib/i386-linux-gnu/libpthread.so Hermes Configuration results --------------------- Build static libs: YES -------Features------- Build with OpenMP: YES Build with TCMalloc: NO Build with BSON: NO Build with MATIO: NO Build with EXODUSII: NO -------Solvers------- Build with UMFPACK: YES Build with PARALUTION: NO Build with PETSC: NO Build with MUMPS: NO Build with SUPERLU: NO Build with TRILINOS: NO -----Hermes common----- Debug version: YES Release version: YES -----Hermes2D----- Build Hermes2D: YES Debug version: YES Release version: YES Test examples: YES Hermes2D with OpenGL: YES --------------------- -- Configuring done -- Generating done -- Build files have been written to: /home/tomas/workspace/hermes3p0-testing/hermes tomas@tomas-VirtualBox:~/workspace/hermes3p0-testing/hermes$ make Scanning dependencies of target hermes_common [ 0%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/mixins.cpp.o [ 1%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/ord.cpp.o [ 1%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/hermes_function.cpp.o [ 1%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/exceptions.cpp.o [ 2%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/api.cpp.o [ 2%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/algebra/matrix.cpp.o [ 2%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/algebra/vector.cpp.o [ 3%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/algebra/algebra_mixins.cpp.o [ 3%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/algebra/dense_matrix_operations.cpp.o [ 3%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/algebra/cs_matrix.cpp.o [ 4%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/util/memory_handling.cpp.o [ 4%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/util/callstack.cpp.o [ 4%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/util/qsort.cpp.o [ 5%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/data_structures/range.cpp.o [ 5%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/data_structures/table.cpp.o [ 5%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/matrix_solver.cpp.o [ 5%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/linear_matrix_solver.cpp.o [ 6%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/nonlinear_matrix_solver.cpp.o [ 6%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/picard_matrix_solver.cpp.o [ 6%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/newton_matrix_solver.cpp.o [ 7%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/nonlinear_convergence_measurement.cpp.o [ 7%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/epetra.cpp.o [ 7%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/aztecoo_solver.cpp.o [ 8%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/amesos_solver.cpp.o [ 8%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/mumps_solver.cpp.o [ 8%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/paralution_solver.cpp.o [ 9%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/superlu_solver.cpp.o [ 9%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/superlu_solver_real.cpp.o [ 9%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/superlu_solver_cplx.cpp.o [ 10%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/petsc_solver.cpp.o [ 10%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/umfpack_solver.cpp.o [ 10%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/precond_ml.cpp.o [ 11%] Building CXX object hermes_common/CMakeFiles/hermes_common.dir/src/solvers/interfaces/precond_ifpack.cpp.o Linking CXX static library libhermes_common.a [ 11%] Built target hermes_common Scanning dependencies of target hermes_common-debug [ 11%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/mixins.cpp.o [ 11%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/ord.cpp.o [ 12%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/hermes_function.cpp.o [ 12%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/exceptions.cpp.o [ 12%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/api.cpp.o [ 13%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/algebra/matrix.cpp.o [ 13%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/algebra/vector.cpp.o [ 13%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/algebra/algebra_mixins.cpp.o [ 14%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/algebra/dense_matrix_operations.cpp.o [ 14%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/algebra/cs_matrix.cpp.o [ 14%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/util/memory_handling.cpp.o [ 15%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/util/callstack.cpp.o [ 15%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/util/qsort.cpp.o [ 15%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/data_structures/range.cpp.o [ 16%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/data_structures/table.cpp.o [ 16%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/matrix_solver.cpp.o [ 16%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/linear_matrix_solver.cpp.o [ 17%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/nonlinear_matrix_solver.cpp.o [ 17%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/picard_matrix_solver.cpp.o [ 17%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/newton_matrix_solver.cpp.o [ 18%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/nonlinear_convergence_measurement.cpp.o [ 18%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/epetra.cpp.o [ 18%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/aztecoo_solver.cpp.o [ 19%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/amesos_solver.cpp.o [ 19%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/mumps_solver.cpp.o [ 19%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/paralution_solver.cpp.o [ 20%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/superlu_solver.cpp.o [ 20%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/superlu_solver_real.cpp.o [ 20%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/superlu_solver_cplx.cpp.o [ 21%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/petsc_solver.cpp.o [ 21%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/umfpack_solver.cpp.o [ 21%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/precond_ml.cpp.o [ 22%] Building CXX object hermes_common/CMakeFiles/hermes_common-debug.dir/src/solvers/interfaces/precond_ifpack.cpp.o Linking CXX static library libhermes_common-debug.a [ 22%] Built target hermes_common-debug Scanning dependencies of target XSDMesh1D [ 23%] Generating include/mesh/mesh_h1d_xml.h, src/mesh/mesh_h1d_xml.cpp [ 23%] Built target XSDMesh1D Scanning dependencies of target XSDMesh2D [ 23%] Generating include/mesh/mesh_h2d_xml.h, src/mesh/mesh_h2d_xml.cpp [ 23%] Built target XSDMesh2D Scanning dependencies of target XSDSolution2D [ 23%] Generating include/function/solution_h2d_xml.h, src/function/solution_h2d_xml.cpp [ 23%] Built target XSDSolution2D Scanning dependencies of target XSDSpace2D [ 24%] Generating include/space/space_h2d_xml.h, src/space/space_h2d_xml.cpp [ 24%] Built target XSDSpace2D Scanning dependencies of target XSDSubdomains2D [ 24%] Generating include/mesh/subdomains_h2d_xml.h, src/mesh/subdomains_h2d_xml.cpp [ 24%] Built target XSDSubdomains2D Scanning dependencies of target hermes2d [ 24%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/boundary_conditions/essential_boundary_conditions.cpp.o [ 24%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/api2d.cpp.o [ 25%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/graph.cpp.o [ 25%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/mixins2d.cpp.o [ 25%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/weakform/weakform.cpp.o [ 26%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/neighbor_search.cpp.o [ 26%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/norm_form.cpp.o [ 26%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/spline.cpp.o [ 26%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/forms.cpp.o [ 27%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/asmlist.cpp.o [ 27%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/projections/ogprojection.cpp.o [ 27%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/projections/ogprojection_nox.cpp.o [ 28%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/quadrature/limit_order.cpp.o [ 28%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/quadrature/quad_std.cpp.o [ 28%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/function/transformable.cpp.o [ 29%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/function/function.cpp.o [ 29%] Building CXX object 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hermes2d/CMakeFiles/hermes2d.dir/src/refinement_selectors/selector.cpp.o [ 53%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/refinement_selectors/order_permutator.cpp.o [ 54%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/refinement_selectors/optimum_selector.cpp.o [ 54%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/refinement_selectors/proj_based_selector.cpp.o [ 54%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/refinement_selectors/l2_proj_based_selector.cpp.o [ 55%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/refinement_selectors/h1_proj_based_selector.cpp.o [ 55%] Building CXX object hermes2d/CMakeFiles/hermes2d.dir/src/refinement_selectors/hcurl_proj_based_selector.cpp.o Linking CXX static library libhermes2d.a [ 57%] Built target hermes2d Scanning dependencies of target hermes2d-debug [ 57%] Building CXX object hermes2d/CMakeFiles/hermes2d-debug.dir/src/boundary_conditions/essential_boundary_conditions.cpp.o [ 57%] 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hermes2d/CMakeFiles/hermes2d-debug.dir/src/refinement_selectors/selector.cpp.o [ 86%] Building CXX object hermes2d/CMakeFiles/hermes2d-debug.dir/src/refinement_selectors/order_permutator.cpp.o [ 87%] Building CXX object hermes2d/CMakeFiles/hermes2d-debug.dir/src/refinement_selectors/optimum_selector.cpp.o [ 87%] Building CXX object hermes2d/CMakeFiles/hermes2d-debug.dir/src/refinement_selectors/proj_based_selector.cpp.o [ 87%] Building CXX object hermes2d/CMakeFiles/hermes2d-debug.dir/src/refinement_selectors/l2_proj_based_selector.cpp.o [ 88%] Building CXX object hermes2d/CMakeFiles/hermes2d-debug.dir/src/refinement_selectors/h1_proj_based_selector.cpp.o [ 88%] Building CXX object hermes2d/CMakeFiles/hermes2d-debug.dir/src/refinement_selectors/hcurl_proj_based_selector.cpp.o Linking CXX static library libhermes2d-debug.a [ 90%] Built target hermes2d-debug Scanning dependencies of target 00-quickShow [ 90%] Building CXX object hermes2d/test_examples/00-quickShow/CMakeFiles/00-quickShow.dir/main.cpp.o [ 90%] Building CXX object hermes2d/test_examples/00-quickShow/CMakeFiles/00-quickShow.dir/definitions.cpp.o Linking CXX executable 00-quickShow ../../libhermes2d.a(mesh.cpp.o): In function `Hermes::Hermes2D::Mesh::convert_quads_to_triangles()': mesh.cpp:(.text+0xe9b0): warning: the use of `tmpnam' is dangerous, better use `mkstemp' /usr/bin/ld: ../../libhermes2d.a(scalar_view.cpp.o): undefined reference to symbol 'glTranslated' //usr/lib/fglrx/libGL.so.1: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[2]: *** [hermes2d/test_examples/00-quickShow/00-quickShow] Error 1 make[1]: *** [hermes2d/test_examples/00-quickShow/CMakeFiles/00-quickShow.dir/all] Error 2 make: *** [all] Error 2 tomas@tomas-VirtualBox:~/workspace/hermes3p0-testing/hermes$