Hi there Jeff,
I've been on the listserv for some months now, but I have not really been a part of any discussions as I am not in any of the areas that are currently doing work. I am a graduate student at Texas A&M so I'm mainly in College Station or Houston. If there is anyone doing this kind of work in these areas let me know because I would love to gain the skill to obtain aerials in remote locations.
Anyway, about the HD video onto youtube. Having photos at 4000x3000 is humungous, so you are going to have to cut that down to the largest resolution available which is 1920x1080. The best way I know how to do this is make a script in photoshop that either crops the image to that resolution, or that resizes the original photos to something similar to that resolution and then crops it to exactly 1920x1080. It is pretty easy to make a script (they are called actions in photoshop) by just going to Window-->Actions and then hit record.
Let me know if this helps or if you figured out a different way to do it. I assume you are using Quicktime Pro to make the timelapse?
Tyler
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Graduate Student/Teaching Assistant
Texas A&M University
High Alpine and Arctic Research Program
Department of Geology and Geophysics, MS 3115
College Station, TX 77843-3115
http://geoweb.tamu.edu/profile/TDepkeVideo/Photographer
http://www.tylerdepke.com