(base) tdiorio@DESKTOP-J3LH90K:~/dsistudio/build$ make    
g++ -c -pipe -fpermissive -O2 -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -I../src -I. -I./plot -I../src/libs -I../src/libs/dsi -I../src/libs/tracking -I../src/libs/mapping -I../src/dicom -I../../anaconda3/include/qt -I../../anaconda3/include/qt/QtOpenGL -I../../anaconda3/include/qt/QtCharts -I../../anaconda3/include/qt/QtWidgets -I../../anaconda3/include/qt/QtGui -I../../anaconda3/include/qt/QtCore -I. -I. -I../../anaconda3/mkspecs/linux-g++ -o main.o ../src/main.cpp                                         In file included from ../src/tipl/utility/basic_image.hpp:9:0,                                                                           from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/utility/pixel_index.hpp: In member function ‘bool tipl::pixel_index<2>::is_valid(const tipl::geometry<2>&) const’:                                                                                                                  ../src/tipl/utility/pixel_index.hpp:154:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                         return offset_[1] < geo[1];                                                                                    In file included from ../src/tipl/utility/basic_image.hpp:9:0,                                                                           from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/utility/pixel_index.hpp: In member function ‘bool tipl::pixel_index<3>::operator<(const tipl::pixel_index<3>&) const’:                                                                                                              ../src/tipl/utility/pixel_index.hpp:269:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                         return index_ < int(rhs.index_);                                                                                               ~~~~~~~^~~~~~~~~~~~~~~~~                                                                                ../src/tipl/utility/pixel_index.hpp: In member function ‘bool tipl::pixel_index<3>::operator==(const tipl::pixel_index<3>&) const’:                                                                                                             ../src/tipl/utility/pixel_index.hpp:273:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                         return index_ == int(rhs.index_);                                                                                              ~~~~~~~^~~~~~~~~~~~~~~~~~                                                                               ../src/tipl/utility/pixel_index.hpp: In member function ‘bool tipl::pixel_index<3>::operator!=(const tipl::pixel_index<3>&) const’:                                                                                                             ../src/tipl/utility/pixel_index.hpp:277:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                         return index_ != int(rhs.index_);                                                                                              ~~~~~~~^~~~~~~~~~~~~~~~~~                                                                               ../src/tipl/utility/pixel_index.hpp: In member function ‘bool tipl::pixel_index<3>::is_valid(const tipl::geometry<3>&) const’:                                                                                                                  ../src/tipl/utility/pixel_index.hpp:311:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                         return offset_[2] < geo[2];                                                                                    In file included from ../src/tipl/morphology/morphology.hpp:7:0,                                                                         from ../src/tipl/tipl.hpp:32,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/numerical/basic_op.hpp: In function ‘void tipl::change_endian(type&)’:                                      ../src/tipl/numerical/basic_op.hpp:1063:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]                         temp[i] = *pdata;                                                                                                             ^                                                                                                        In file included from ../src/tipl/morphology/morphology.hpp:10:0,                                                                        from ../src/tipl/tipl.hpp:32,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/numerical/index_algorithm.hpp: In function ‘void tipl::get_connected_neighbors(const tipl::pixel_index<2>&, const tipl::geometry<2>&, std::vector<tipl::pixel_index<2> >&)’:                                                        ../src/tipl/numerical/index_algorithm.hpp:26:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                if (index.x()+1 < geo.width())                                                                                              ~~~~~~~~~~~~^~~~~~~~~~~~~                                                                                      ../src/tipl/numerical/index_algorithm.hpp:32:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                if (index.y()+1 < geo.height())                                                                                             ~~~~~~~~~~~~^~~~~~~~~~~~~~                                                                                     ../src/tipl/numerical/index_algorithm.hpp: In function ‘void tipl::get_connected_neighbors(const tipl::pixel_index<3>&, const tipl::geometry<3>&, std::vector<tipl::pixel_index<3> >&)’:                                                        ../src/tipl/numerical/index_algorithm.hpp:51:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                if (index.x()+1 < geo.width())                                                                                              ~~~~~~~~~~~~^~~~~~~~~~~~~                                                                                      ../src/tipl/numerical/index_algorithm.hpp:57:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                if (index.y()+1 < geo.height())                                                                                             ~~~~~~~~~~~~^~~~~~~~~~~~~~                                                                                     ../src/tipl/numerical/index_algorithm.hpp:63:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                if (index.z()+1 < geo.depth())                                                                                              ~~~~~~~~~~~~^~~~~~~~~~~~~                                                                                      ../src/tipl/numerical/index_algorithm.hpp: In function ‘void tipl::get_neighbors(const tipl::pixel_index<2>&, const tipl::geometry<2>&, std::vector<tipl::pixel_index<2> >&)’:                                                                  ../src/tipl/numerical/index_algorithm.hpp:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                bool has_right = index.x()+1 < geo.width();                                                                                              ~~~~~~~~~~~~^~~~~~~~~~~~~                                                                         ../src/tipl/numerical/index_algorithm.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                               if (index.y()+1 < geo.height())                                                                                             ~~~~~~~~~~~~^~~~~~~~~~~~~~                                                                                     ../src/tipl/numerical/index_algorithm.hpp: In function ‘void tipl::get_neighbors(const tipl::pixel_index<3>&, const tipl::geometry<3>&, std::vector<tipl::pixel_index<3> >&)’:                                                                  ../src/tipl/numerical/index_algorithm.hpp:126:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                               bool has_right = index.x()+1 < geo.width();                                                                                              ~~~~~~~~~~~~^~~~~~~~~~~~~                                                                         ../src/tipl/numerical/index_algorithm.hpp:128:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                               bool has_bottom = index.y()+1 < geo.height();                                                                                             ~~~~~~~~~~~~^~~~~~~~~~~~~~                                                                       ../src/tipl/numerical/index_algorithm.hpp:209:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                               if (index.z()+1 < geo.depth())                                                                                              ~~~~~~~~~~~~^~~~~~~~~~~~~                                                                                      In file included from ../src/tipl/segmentation/segmentation.hpp:9:0,                                                                     from ../src/tipl/tipl.hpp:33,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/segmentation/fast_marching.hpp: In function ‘void tipl::segmentation::fast_marching(const ImageType&, TimeType&, IndexType)’:                                                                                                       ../src/tipl/segmentation/fast_marching.hpp:117:14: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]                                                                                                              std::auto_ptr<narrow_band_point> active_point(narrow_band.front());                                                          ^~~~~~~~                                                                                                  In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/tipl/tipl.hpp:35:0,                                                                                         from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/numerical/transformation.hpp: In function ‘void tipl::create_affine_transformation_matrix(input_rotation_iter, input_shift_iter, output_iter, tipl::vdim<3>)’:                                                                      ../src/tipl/numerical/transformation.hpp:498:68: warning: typedef ‘value_type’ locally defined but not used [-Wunused-local-typedefs]                                                                                                                typedef typename std::iterator_traits<output_iter>::value_type value_type;                                                                                                             ^~~~~~~~~~                                          In file included from ../src/tipl/numerical/resampling.hpp:8:0,                                                                          from ../src/tipl/tipl.hpp:41,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/numerical/statistics.hpp: In function ‘double tipl::gaussian_radial_basis(value_type, value_type)’:         ../src/tipl/numerical/statistics.hpp:92:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]            if(sd == 0.0)                                                                                                           ^~                                                                                                                 ../src/tipl/numerical/statistics.hpp:94:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’                                                                                                     dx /= sd;                                                                                                               ^~                                                                                                                    In file included from ../src/tipl/io/io.hpp:6:0,                                                                                         from ../src/tipl/tipl.hpp:50,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/io/nifti.hpp: At global scope:                                                                              ../src/tipl/io/nifti.hpp:335:10: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declaration ]                                                                                                                            std::auto_ptr<input_interface> input_stream;                                                                                 ^~~~~~~~                                                                                                      In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/tipl/io/io.hpp:7:0,                                                                                         from ../src/tipl/tipl.hpp:50,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/io/dicom.hpp: In function ‘bool tipl::io::decode_1_2_840_10008_1_2_4_70(unsigned char*, long int, std::vector<unsigned char, std::allocator<unsigned char> >&, int*, int*, int*, int*)’:                                            ../src/tipl/io/dicom.hpp:202:39: warning: comparison is always true due to limited range of data type [-Wtype-limits]                                if ((btS1 >= 0) && (btS1 <= 16))                                                                                             ~~~~~^~~~                                                                             ../src/tipl/io/dicom.hpp:133:25: warning: variable ‘btS2’ set but not used [-Wunused-but-set-variable]                       unsigned char btS1, btS2, SOSss, SOSse, SOSahal, SOSpttrans, btMarkerType, SOSns = 0x00; //tag                                              ^~~~                                                                                           ../src/tipl/io/dicom.hpp:133:38: warning: variable ‘SOSse’ set but not used [-Wunused-but-set-variable]                      unsigned char btS1, btS2, SOSss, SOSse, SOSahal, SOSpttrans, btMarkerType, SOSns = 0x00; //tag                                                           ^~~~~                                                                             ../src/tipl/io/dicom.hpp:136:10: warning: variable ‘SOFarrayPos’ set but not used [-Wunused-but-set-variable]                long SOFarrayPos, SOSarrayPos;                                                                                               ^~~~~~~~~~~                                                                                                   ../src/tipl/io/dicom.hpp:136:23: warning: variable ‘SOSarrayPos’ set but not used [-Wunused-but-set-variable]                long SOFarrayPos, SOSarrayPos;                                                                                                            ^~~~~~~~~~~                                                                                      ../src/tipl/io/dicom.hpp: In member function ‘bool tipl::io::dicom_group_element::read(std::ifstream&, tipl::io::transfer_syntax_type, bool)’:                                                                                                  ../src/tipl/io/dicom.hpp:652:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                    while(in && in.tellg() < sq_end_pos)                                                                                                ~~~~~~~~~~~^~~~~~~~~~~~                                                                    ../src/tipl/io/dicom.hpp: At global scope:                                                                              ../src/tipl/io/dicom.hpp:973:10: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declaration ]                                                                                                                            std::auto_ptr<std::ifstream> input_io;                                                                                       ^~~~~~~~                                                                                                      In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/tipl/io/io.hpp:7:0,                                                                                         from ../src/tipl/tipl.hpp:50,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/io/dicom.hpp: In member function ‘bool tipl::io::dicom::get_text_all(short unsigned int, short unsigned int, std::__cxx11::string&) const’:                                                                                         ../src/tipl/io/dicom.hpp:1197:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]           for(int i = 0;i < data.size();++i)                                                                                                    ~~^~~~~~~~~~~~~                                                                                  ../src/tipl/io/dicom.hpp: In static member function ‘static void tipl::io::dicom::get_report(const std::vector<tipl::io::dicom_group_element>&, std::__cxx11::string&, bool)’:                                                                  ../src/tipl/io/dicom.hpp:1655:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]           for (int i = 0;i < data.size();++i)                                                                                                    ~~^~~~~~~~~~~~~                                                                                 In file included from ../src/tipl/tipl.hpp:56:0,                                                                                         from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/io/avi.hpp: At global scope:                                                                                ../src/tipl/io/avi.hpp:137:10: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]      std::auto_ptr<std::ofstream> out;                                                                                            ^~~~~~~~                                                                                                      In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/tipl/tipl.hpp:68:0,                                                                                         from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/reg/linear.hpp: In function ‘void tipl::reg::get_bound(const image_type1&, const image_type2&, const transform_type&, transform_type&, transform_type&, tipl::reg::reg_type, const float*)’:                                        ../src/tipl/reg/linear.hpp:326:49: warning: typedef ‘value_type’ locally defined but not used [-Wunused-local-typedefs]      typedef typename transform_type::value_type value_type;                                                                                                             ^~~~~~~~~~                                                             In file included from ../src/tipl/tipl.hpp:77:0,                                                                                         from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/ml/ada_boost.hpp: In member function ‘void image::ml::ada_boost<method_type>::learn(attributes_iterator_type, attributes_iterator_type, size_t, classifications_iterator_type)’:                                                    ../src/tipl/ml/ada_boost.hpp:109:18: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]                                                                                                                                std::auto_ptr<method_type> ht(new method_type);                                                                              ^~~~~~~~                                                                                              In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/tipl/tipl.hpp:78:0,                                                                                         from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/ml/decision_tree.hpp: At global scope:                                                                      ../src/tipl/ml/decision_tree.hpp:75:10: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]                                                                                                                     std::auto_ptr<decision_tree<attribute_type,classification_type> > left_tree;                                                 ^~~~~~~~                                                                                                      In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/tipl/tipl.hpp:78:0,                                                                                         from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/ml/decision_tree.hpp:76:10: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]                                                                                                                     std::auto_ptr<decision_tree<attribute_type,classification_type> > right_tree;                                                ^~~~~~~~                                                                                                      In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/tipl/tipl.hpp:83:0,                                                                                         from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/ml/cnn.hpp: In member function ‘virtual void tipl::ml::basic_layer::initialize_weight(tipl::uniform_dist<float>&)’:                                                                                                                 ../src/tipl/ml/cnn.hpp:128:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 0; i < weight.size(); ++i)                                                                                                 ~~^~~~~~~~~~~~~~~                                                                               ../src/tipl/ml/cnn.hpp: In member function ‘virtual void tipl::ml::max_pooling_layer::forward_propagation(const float*, float*)’:                                                                                                               ../src/tipl/ml/cnn.hpp:272:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 0; i < o2i.size(); i++)                                                                                                    ~~^~~~~~~~~~~~                                                                                  ../src/tipl/ml/cnn.hpp: In member function ‘virtual void tipl::ml::max_pooling_layer::back_propagation(float*, float*, const float*)’:                                                                                                          ../src/tipl/ml/cnn.hpp:289:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 0; i < o2i.size(); i++)                                                                                                    ~~^~~~~~~~~~~~                                                                                  ../src/tipl/ml/cnn.hpp:301:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 0; i < i2o.size(); i++)                                                                                                    ~~^~~~~~~~~~~~                                                                                  ../src/tipl/ml/cnn.hpp: In member function ‘void tipl::ml::max_pooling_layer::init_connection()’:                       ../src/tipl/ml/cnn.hpp:316:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int c = 0,out_index = 0; c < in_dim.depth(); ++c)                                                                                                ~~^~~~~~~~~~~~~~~~                                                                ../src/tipl/ml/cnn.hpp:317:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                  for(int y = 0; y < out_dim.height(); ++y)                                                                                              ~~^~~~~~~~~~~~~~~~~~                                                                        ../src/tipl/ml/cnn.hpp:318:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                      for(int x = 0; x < out_dim.width(); ++x,++out_index)                                                                                   ~~^~~~~~~~~~~~~~~~~                                                                     ../src/tipl/ml/cnn.hpp:324:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                              if(from_x + dx < in_dim.width() &&                                                                                         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~                                                                ../src/tipl/ml/cnn.hpp:325:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                 from_y + dy < in_dim.height())                                                                                          ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~                                                               ../src/tipl/ml/cnn.hpp: In member function ‘virtual void tipl::ml::convolutional_layer::forward_propagation(const float*, float*)’:                                                                                                             ../src/tipl/ml/cnn.hpp:381:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int outc = 0; outc < out_dim.depth(); ++outc, out_ptr += out_dim.plane_size())                                                        ~~~~~^~~~~~~~~~~~~~~~~                                                                       ../src/tipl/ml/cnn.hpp:386:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                  for(int inc = 0; inc < in_dim.depth(); inc++, in_ptr += in_dim.plane_size(),w_ptr += kernel_size2)                                       ~~~~^~~~~~~~~~~~~~~~                                                                      ../src/tipl/ml/cnn.hpp: In member function ‘virtual void tipl::ml::convolutional_layer::calculate_dwdb(const float*, const float*, std::vector<float>&, std::vector<float>&)’:                                                                  ../src/tipl/ml/cnn.hpp:412:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int outc = 0, outc_pos = 0, w_index = 0; outc < out_dim.depth(); outc++, outc_pos += out_dim.plane_size())                                                       ~~~~~^~~~~~~~~~~~~~~~~                                            ../src/tipl/ml/cnn.hpp:414:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                  for(int inc = 0;inc < in_dim.depth();++inc,w_index += kernel_size2)                                                                     ~~~~^~~~~~~~~~~~~~~~                                                                       ../src/tipl/ml/cnn.hpp:431:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                  for(int outc = 0, outc_pos = 0; outc < out_dim.depth(); outc++, outc_pos += out_dim.plane_size())                                                       ~~~~~^~~~~~~~~~~~~~~~~                                                     ../src/tipl/ml/cnn.hpp: In member function ‘virtual void tipl::ml::convolutional_layer::back_propagation(float*, float*, const float*)’:                                                                                                        ../src/tipl/ml/cnn.hpp:443:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int outc = 0, outc_pos = 0,w_index = 0; outc < out_dim.depth(); ++outc, outc_pos += out_dim.plane_size())                                                       ~~~~~^~~~~~~~~~~~~~~~~                                             ../src/tipl/ml/cnn.hpp:445:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                  for(int inc = 0, inc_pos = 0; inc < in_dim.depth(); ++inc, inc_pos += in_dim.plane_size(),w_index += kernel_size2)                                                                                                                                                            ~~~~^~~~~~~~~~~~~~~~                                                         ../src/tipl/ml/cnn.hpp: In member function ‘const tipl::ml::network& tipl::ml::network::operator=(const tipl::ml::network&)’:                                                                                                                   ../src/tipl/ml/cnn.hpp:781:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 0;i < rhs.layers.size();++i)                                                                                              ~~^~~~~~~~~~~~~~~~~~~                                                                            ../src/tipl/ml/cnn.hpp: In member function ‘void tipl::ml::network::sort_fully_layer()’:                                ../src/tipl/ml/cnn.hpp:811:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 0;i+1 < layers.size();++i)                                                                                                ~~~~^~~~~~~~~~~~~~~                                                                              ../src/tipl/ml/cnn.hpp:832:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                          if(idx[i] != i)                                                                                    ../src/tipl/ml/cnn.hpp:836:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                              for(int j = i,k = idx[i];j < nw2.size();j += m,k += m)                                                                                           ~~^~~~~~~~~~~~                                                        ../src/tipl/ml/cnn.hpp: In member function ‘bool tipl::ml::network::add(const string&)’:                                ../src/tipl/ml/cnn.hpp:959:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 1;i < list.size();++i)                                                                                                    ~~^~~~~~~~~~~~~                                                                                  ../src/tipl/ml/cnn.hpp: In member function ‘std::__cxx11::string tipl::ml::network::get_layer_text() const’:            ../src/tipl/ml/cnn.hpp:977:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]              for(int i = 0;i < geo.size();++i)                                                                                                     ~~^~~~~~~~~~~~                                                                                   ../src/tipl/ml/cnn.hpp:982:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                  if(i < layers.size())                                                                                                      ~~^~~~~~~~~~~~~~~                                                                                       ../src/tipl/ml/cnn.hpp: In member function ‘void tipl::ml::network::forward_propagation(const float*, float*) const’:   ../src/tipl/ml/cnn.hpp:1052:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]             for(int k = 0;k < layers.size();++k)                                                                                                  ~~^~~~~~~~~~~~~~~                                                                                ../src/tipl/ml/cnn.hpp:1055:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                 for(int m = 0;m < layers[k]->af.size();++m)                                                                                           ~~^~~~~~~~~~~~~~~~~~~~~~                                                                     ../src/tipl/ml/cnn.hpp: In member function ‘float tipl::ml::network::calculate_error(const std::vector<float>&, float*)’:                                                                                                                       ../src/tipl/ml/cnn.hpp:1115:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]             for(int i = 0;i < output_size;++i)                                                                                                    ~~^~~~~~~~~~~~~                                                                                  ../src/tipl/ml/cnn.hpp: In member function ‘void tipl::ml::network::calculate_dwdb(const float*, const float*, const float*, std::vector<std::vector<float> >&, std::vector<std::vector<float> >&)’:                                            ../src/tipl/ml/cnn.hpp:1126:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]             for(int k = 1;k < layers.size();++k)                                                                                                  ~~^~~~~~~~~~~~~~~                                                                                ../src/tipl/ml/cnn.hpp: In member function ‘void tipl::ml::trainer::initialize_training(const tipl::ml::network&)’:     ../src/tipl/ml/cnn.hpp:1242:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                 for(int j = 0;j < nn.layers.size();++j)                                                                                               ~~^~~~~~~~~~~~~~~~~~                                                                         In file included from ../src/tracking/region/Regions.h:8:0,                                                                              from ../src/cmd/cnt.cpp:3,                                                                                              from ../src/main.cpp:15:                                                                               ../src/tracking/region/RegionModel.h: At global scope:                                                                  ../src/tracking/region/RegionModel.h:12:14: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]                                                                                                                     std::auto_ptr<mesh_type> object;                                                                                             ^~~~~~~~                                                                                                  In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/cmd/cnt.cpp:6:0,                                                                                            from ../src/main.cpp:15:                                                                               ../src/connectometry/group_connectometry.hpp:48:10: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]                                                                                                         std::auto_ptr<connectometry_result> result_fib;                                                                              ^~~~~~~~                                                                                                      In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/cmd/cnt.cpp:6:0,                                                                                            from ../src/main.cpp:15:                                                                               ../src/connectometry/group_connectometry.hpp:61:10: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]                                                                                                         std::auto_ptr<QTimer> timer;                                                                                                 ^~~~~~~~                                                                                                      In file included from /usr/include/c++/7/memory:80:0,                                                                                    from /usr/include/c++/7/thread:39,                                                                                      from ../src/tipl/utility/basic_image.hpp:5,                                                                             from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here                                                            template<typename> class auto_ptr;                                                                                                               ^~~~~~~~                                                                                    In file included from ../src/cmd/cnt.cpp:7:0,                                                                                            from ../src/main.cpp:15:                                                                               ./ui_group_connectometry.h: In member function ‘void Ui_group_connectometry::setupUi(QDialog*)’:                        ./ui_group_connectometry.h:308:24: error: ‘class QListWidget’ has no member named ‘setItemAlignment’; did you mean ‘setItemWidget’?                                                                                                                      variable_list->setItemAlignment(Qt::AlignLeading);                                                                                     ^~~~~~~~~~~~~~~~                                                                                                        setItemWidget                                                                                   ../src/main.cpp: In function ‘QStringList search_files(QString, QString)’:                                              ../src/main.cpp:68:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                  for(unsigned int i = 0;i < dir_list.size();++i)                                                                                                ~~^~~~~~~~~~~~~~~~~                                                                         ../src/main.cpp:72:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                      for(unsigned int index = 0;index < new_list.size();++index)                                                                                        ~~~~~~^~~~~~~~~~~~~~~~~                                                             ../src/main.cpp:75:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                      for (unsigned int index = 0;index < file_list.size();++index)                                                                                       ~~~~~~^~~~~~~~~~~~~~~~~~                                                           In file included from ../src/tipl/morphology/morphology.hpp:7:0,                                                                         from ../src/tipl/tipl.hpp:32,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/numerical/basic_op.hpp: In instantiation of ‘void tipl::change_endian(datatype*, size_t) [with datatype = float; size_t = long unsigned int]’:                                                                                      ../src/tipl/io/dicom.hpp:667:88:   required from here                                                                   ../src/tipl/numerical/basic_op.hpp:1100:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                     for (int index = 0; index < count; ++index)                                                                                                 ~~~~~~^~~~~~~                                                                                  ../src/tipl/numerical/basic_op.hpp: In instantiation of ‘void tipl::change_endian(datatype*, size_t) [with datatype = double; size_t = long unsigned int]’:                                                                                     ../src/tipl/io/dicom.hpp:669:90:   required from here                                                                   ../src/tipl/numerical/basic_op.hpp:1100:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                ../src/tipl/numerical/basic_op.hpp: In instantiation of ‘void tipl::change_endian(datatype*, size_t) [with datatype = short int; size_t = long unsigned int]’:                                                                                  ../src/tipl/io/dicom.hpp:671:88:   required from here                                                                   ../src/tipl/numerical/basic_op.hpp:1100:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                ../src/tipl/numerical/basic_op.hpp: In instantiation of ‘void tipl::change_endian(datatype*, size_t) [with datatype = int; size_t = long unsigned int]’:                                                                                        ../src/tipl/io/dicom.hpp:673:84:   required from here                                                                   ../src/tipl/numerical/basic_op.hpp:1100:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                In file included from ../src/tipl/numerical/transformation.hpp:3:0,                                                                      from ../src/tipl/tipl.hpp:35,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/numerical/matrix.hpp: In instantiation of ‘void tipl::mat::eigen_decomposition_sym(input_iterator, output_iterator1, output_iterator2, const dym_type&) [with input_iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; output_iterator1 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; output_iterator2 = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; dym_type = tipl::dyndim]’:                                              ../src/tipl/ml/em.hpp:33:106:   required from here                                                                      ../src/tipl/numerical/matrix.hpp:2186:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                               if (k != i)                                                                                                                 ~~^~~~                                                                                                 ../src/tipl/numerical/matrix.hpp: In instantiation of ‘void tipl::matrix<row_count, col_count, value_type_>::swap(tipl::matrix<row_count, col_count, value_type_>&) [with int row_count = 4; int col_count = 4; value_type_ = float]’:          ../src/tracking/region/Regions.h:71:47:   required from here                                                            ../src/tipl/numerical/matrix.hpp:3042:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                           for(int i = 0;i < mat_size;++i)                                                                                                       ~~^~~~~~~~~~                                                                                     In file included from ../src/tipl/utility/basic_image.hpp:7:0,                                                                           from ../src/tipl/tipl.hpp:29,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/utility/geometry.hpp: In instantiation of ‘bool tipl::geometry<3>::is_valid(T, T, T) const [with T = int]’: ../src/libs/tracking/roi.hpp:14:34:   required from here                                                                ../src/tipl/utility/geometry.hpp:508:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                            return x >= 0 && y >= 0 && z >= 0 && x < w && y < h && z < d;                                                                                                ~~^~~                                                                     ../src/tipl/utility/geometry.hpp:508:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                            return x >= 0 && y >= 0 && z >= 0 && x < w && y < h && z < d;                                                                                                         ~~^~~                                                            ../src/tipl/utility/geometry.hpp:508:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                            return x >= 0 && y >= 0 && z >= 0 && x < w && y < h && z < d;                                                                                                                  ~~^~~                                                   In file included from ../src/tipl/morphology/morphology.hpp:7:0,                                                                         from ../src/tipl/tipl.hpp:32,                                                                                           from ../src/connectometry/group_connectometry_analysis.h:5,                                                             from ../src/mainwindow.h:6,                                                                                             from ../src/main.cpp:9:                                                                                ../src/tipl/numerical/basic_op.hpp: In instantiation of ‘void tipl::change_endian(type&) [with type = double]’:         ../src/tipl/numerical/basic_op.hpp:1101:22:   required from ‘void tipl::change_endian(datatype*, size_t) [with datatype = double; size_t = long unsigned int]’                                                                                  ../src/tipl/io/dicom.hpp:669:90:   required from here                                                                   ../src/tipl/numerical/basic_op.hpp:1062:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                     for (char i = 0; i < sizeof(type); ++i,--pdata)                                                                                          ~~^~~~~~~~~                                                                                       ../src/tipl/numerical/basic_op.hpp:1063:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]                         temp[i] = *pdata;                                                                                              ../src/tipl/numerical/basic_op.hpp: In instantiation of ‘void tipl::change_endian(datatype*, size_t) [with datatype = long int; size_t = long unsigned int]’:                                                                                   ../src/tipl/io/nifti.hpp:435:22:   required from ‘void tipl::io::nifti_base<input_interface, output_interface>::convert_to_small_endian2() [with input_interface = gz_istream; output_interface = gz_ostream]’                                  ../src/tipl/io/nifti.hpp:508:41:   required from ‘bool tipl::io::nifti_base<input_interface, output_interface>::load_from_file(const char_type*) [with char_type = char; input_interface = gz_istream; output_interface = gz_ostream]’          ../src/main.cpp:50:60:   required from here                                                                             ../src/tipl/numerical/basic_op.hpp:1100:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                     for (int index = 0; index < count; ++index)                                                                                                 ~~~~~~^~~~~~~                                                                                  ../src/tipl/numerical/basic_op.hpp: In instantiation of ‘void tipl::change_endian(type&) [with type = long int]’:       ../src/tipl/io/nifti.hpp:441:22:   required from ‘void tipl::io::nifti_base<input_interface, output_interface>::convert_to_small_endian2() [with input_interface = gz_istream; output_interface = gz_ostream]’                                  ../src/tipl/io/nifti.hpp:508:41:   required from ‘bool tipl::io::nifti_base<input_interface, output_interface>::load_from_file(const char_type*) [with char_type = char; input_interface = gz_istream; output_interface = gz_ostream]’          ../src/main.cpp:50:60:   required from here                                                                             ../src/tipl/numerical/basic_op.hpp:1062:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]                                                                                                                     for (char i = 0; i < sizeof(type); ++i,--pdata)                                                                                          ~~^~~~~~~~~                                                                                       ../src/tipl/numerical/basic_op.hpp:1063:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]                         temp[i] = *pdata;                                                                                              make: *** [Makefile:7954: main.o] Error 1