much. It's a box that fits on my hand not some mass spec. Is there is
list of OS alternatives that need to be created out there? I'll have
to check but I can't remember anything right now.
That's a good idea. I should put mine on the web...
The nanodrop idea is one that would have you paying patent royalties.
There would not be any way around that since the nanodrop concept is so pure.
Put a drop that's inaccurately sized down on a solvent-wiped-clean inverted microscope
objective glass surface, then cause the sample shape to be precise thickness
by lowering a detector with glass lens in a super repeatable way to contain it
and then do a measurement through the same old calibrated optical path
with one thing changed, the sample.
The fact that the $10K product is "It's a box that fits on my hand not some mass spec."
is a value and costs more than if it were in a file cabinet. Think of
making a prism spectrophotometer... to get fine wavelength resolution
you need fine angle measurement, so to get that in a small box requires
a microfabricated glass angle scale, (also called optical encoder), that can be expensive.
Cheaper would be a 15 inch radius semicircular encoder with marks made by an ordinary
laser printer, then toner transferred to a metal plate. but then "box that fits on my hand"
has gone out the window.
John
> That's a good idea. I should put mine on the web...
> The nanodrop idea is one that would have you paying patent royalties.
>
> There would not be any way around that since the nanodrop concept is so
> pure.
> Put a drop that's inaccurately sized down on a solvent-wiped-clean inverted
> microscope
> objective glass surface, then cause the sample shape to be precise thickness
> by lowering a detector with glass lens in a super repeatable way to contain
> it
> and then do a measurement through the same old calibrated optical path
> with one thing changed, the sample.
>
Hmm, well, what if we came up with a novel method to do what they do,
i.e., we came up with a different method to quantify the amount of
DNA.
I recall (very vaguely, the details might be wrong so tell me the
right story) a story where a company needed to come up with a BIOS(?)
alternative so they put some engineers in a room and told them what to
do. The result was the same but the way the thing worked was
significantly different so no patent problems.
Alternatively by using an additional wavelength and an additional
component that is optically dense at that wavelength (such as a pH
indicator dye), an exact thickness can be determined.
They gambled a large capital amount. Won't happen like that in this setting.
Will end up paying royalties if they allow or being shut down by huge $$
lawsuits more likely. The nanodrop patent is likely a very fundamental one,
a process patent with wide ranging claims.
JG
I think the rising costs of colleges, (where the researchers are), will drive many
to offer online courses and many more to shut op for good. In that atmosphere,
some low cost gear could be bought by university purchasing agents if good enough,
and taking up a small enough desktop footprint. There will be many paths in biology --
it's big field. Some will still go for status appeal and have the shiny latest,
while many will make do with far less status and just a little less
functionality for the money.
MEMS bio "chip" diagnostics won't be the only way things are assessed,
but it will be available, and the DIY/DICheapo gear won't use that
method with its built in high capital chip fabbing required.
I do see a coming of semi-custom microfluidics plus instrument heads that
clamp on modularly for building your own light and IR and UV and microwave
measurements of stuff going by in a 70 um channel. Some of the less expensive
MEMS fabbing will be DIY available, just not the custom integrated electronics and MEMS
assay instruments.
JG
That's a good concept that would sidestep nanodrop. Good thinking.
Is there such a thing as a cover slip just 3 mm square? It
could be dropped on top of a droplet of fluid on a slide...then
proceed as you say above.
JG
I heard these chips were available in England from vending machines for a dollar.
http://www.telecareaware.com/index.php/mobile-phone-chip-for-std-self-testing-uk.html
Yes, that's a problem, but starting small and with contributions to
easily updated open hardware designs can get a perception of a small market
at first. Then some of the makers who only respond to a larger one will jump in.
I have some designs planned to build with 3D printing, inexpensive circuit assembly,
and free open source mechanical and electronics design tools we have now
and would like help from you if can get your attitude more towards possibility
and away from the seeming defeatist position you are on.
John Griessen
If you could direct your view back to the nearer term,
I'd be interested to hear your take on optical tweezer
and microfluidic valves and surface moving of drops by electrowetting
variability via Voltage changes.
JG
http://news.softpedia.com/news/Microscopic-Cylinders-Resemble-Neurons-173680.shtml
Are there any cheap/diy optical tweezer?
Back when discussing incubators, shakers, centrifuges, and photometric "done incubating" sensors,
I noticed that the same basic 3DP part could be the basis of all of those
and allow moving vials between sensors. http://ecosensory.com/diybio/carousel_greycoded-1.jpg
Here's a sketch of how to minimize heat sinking of the vials to the holder:
http://ecosensory.com/diybio/carousel_tube_wells-1.jpg
(That's good for incubator or PCR ramp up/down speed and accuracy when air-heater air-cooler driven)
It's also a good simple handler station for a dropper bot that only moves up and down, (very cheap),
so the price could get very low by sharing part making volume with other assemblies used
in a diy or official lab with low budget and perfectly good performance.
JG
The reason it costs so much is because it has an Ocean Optics USB2000
(nice linear CCD, and the volume of sales are much lower than say a
pocket camera (which use CMOS generally, which are not as good for
spectroscopy purposes due to larger pixels))... there's also a
perkin-elmer light source inside them, a xenon flasher if I recall
correctly, so again volume-of-sale is low there.
Actually, the workhorses of the NanoDrop aren't even made by the
company, they basically only make the metal shell and the armature
assembly, and the software... which all make usability very
user-friendly.
I've been thinking about designing a spectrometer based on the same
sensor for a while now, but I don't know how to layout boards, and as
I mentioned about volume-of-sales... who would buy it to help recover
my costs.... now an instrument for just analysing DNA concentrations,
that is something that is less flexible, but yes, probably cheaper to
design, make and manufacture.
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--
Nathan McCorkle
Rochester Institute of Technology
College of Science, Biotechnology/Bioinformatics
Adding CAD/STL(?) files to a repository like SKDB for the thousands of
parts of one of those sounds interesting.
Quick suggestion for deionised water: I'm unsure of the purity, but deionised water is available in the hardware section of Tesco for car batteries etc, so ought to be available from auto or camping supply stores and such as well.
On 30 Dec 2010 18:08, "Bryan Bishop" <kan...@gmail.com> wrote:
On Thu, Dec 30, 2010 at 12:00 PM, Giovanni Lostumbo wrote:
>
> Adding CAD/STL(?) files to a reposito...
Actually the basic way of doing that is:
* store your content in a git repository
* add a basic metadata file in yaml that lists out dependencies, a BOM either in this file or another
* put this git repo somewhere it'll be identified for inclusion in a package mirror of open source hardware, or i.e. ask me to remember it
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To post to...
Alright, Lets see where we can start. (lets see where i can start)
I'm going to start small, and see where it takes me. I'm going to
start with a simple Arduino data-logging shield. Now, for some things
i think an arduino is going to be overkill and over expensive, so i
dont think the arduino is good for everything. But for now, it's an
abstraction layer that works well, and if your like me you already
have one unused sitting in the corner.
I found a Data-logging shield recently released by Ladyada. It looks
nice, and probably will work well for a lot of projects where data
logging is needed. But, this being a scientifically minded group, i
realized that the RTC clock included in that design is not super
accurate.
Okay, so i've only been working on this for a couple days. I could use
some help. I've decided to hijack the eaglecad files from ladyada, and
instead use a ChronoDot (macetech) and a OpenLog (sparkfun). I think
i'm almost done actually. I'm just running into issues wiring
everything up. The EagleCad files are here:
http://forums.adafruit.com/viewtopic.php?f=8&t=19675
-Andrew
I wish there was an easier starting open set of PCB and schematic tools
so people would stop using crippled free versions of commercial software
for open hardware projects. KiCAD might be the first to get the ease of use,
and there's also one called Fritzing that could be it. My favorites,
the gEDA tools, have a learning curve that puts off many users, especially
Windows users since even the install on Windows is difficult.
I'm not going to be able to chip in help on this project because I
have not seen many requests for components from biologists -- they mostly want
finished systems that are low cost, and so the modular Arduino approach
loads systems down with costs that disappear when you make your own
system boards. Another thing about modular Arduino is that it aims at
crude fabrication techniques instead of being miniature, so packaging
it into systems is harder. Instead of 0.1 inch pitch post connectors
I like to use flat flex connectors with an easy to solder pitch of 1.25mm
between lands. They're as inexpensive as 0.025" posts on 0.100" centers
and small and lay down flat to a board, (2mm high).
So now that I've blasted Arduino modules let me say that using the hardware
and Arduino code tools is great for standalone instruments, or instruments
connected to a PC and there are low cost modules to use that can be a
starting point for more compact physical designs:
http://wiblocks.luciani.org/
http://wiblocks.luciani.org/prices.html
They're nearly the same as your proposal -- see the specs for NB2AS module.
And they're made with open design tools so going from prototype to production is easy.
I think JCL's Altoids tin Sanguino/Arduino compatible modules would be even better with
smaller flat flex cables between rather than IDE cables, but the IDE cables are basically
free, and then, the flat flex cable stuff can be left for production.
John Griessen
plugging for openness in open hardware,
and plugging John Luciani's existing products too :-)