Running quicktests... Test project /global/project/projectdirs/m2360/packagesCPFE/build/tests/quick_tests Start 1: step.debug Start 2: step.release Start 3: affinity.debug Start 4: mpi.debug Start 5: tbb.debug Start 6: p4est.debug Start 7: step-petsc.debug Start 8: lapack.debug Start 9: umfpack.debug Start 10: hdf5.debug Start 11: boost_zlib.debug 1/11 Test #5: tbb.debug ........................***Failed 0.68 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10700: tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3648: tbb.debug.run] Error 2 Test tbb.debug: BUILD =============================== OUTPUT BEGIN =============================== tbb.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug tbb.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 2/11 Test #2: step.release .....................***Failed 0.69 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10861: tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3713: step.release.run] Error 2 Test step.release: BUILD =============================== OUTPUT BEGIN =============================== step.release: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_release step.release: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 3/11 Test #7: step-petsc.debug .................***Failed 0.69 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:11217: tests/quick_tests/CMakeFiles/step-petsc.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3856: step-petsc.debug.run] Error 2 Test step-petsc.debug: BUILD =============================== OUTPUT BEGIN =============================== step-petsc.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug step-petsc.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 4/11 Test #10: hdf5.debug .......................***Failed 0.69 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:11249: tests/quick_tests/CMakeFiles/hdf5.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3869: hdf5.debug.run] Error 2 Test hdf5.debug: BUILD =============================== OUTPUT BEGIN =============================== hdf5.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug hdf5.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 5/11 Test #4: mpi.debug ........................***Failed 0.71 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10926: tests/quick_tests/CMakeFiles/mpi.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3739: mpi.debug.run] Error 2 Test mpi.debug: BUILD =============================== OUTPUT BEGIN =============================== mpi.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug mpi.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 6/11 Test #11: boost_zlib.debug .................***Failed 0.70 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10311: tests/quick_tests/CMakeFiles/boost_zlib.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3492: boost_zlib.debug.run] Error 2 Test boost_zlib.debug: BUILD =============================== OUTPUT BEGIN =============================== boost_zlib.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug boost_zlib.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 7/11 Test #8: lapack.debug .....................***Failed 0.76 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10732: tests/quick_tests/CMakeFiles/lapack.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3661: lapack.debug.run] Error 2 Test lapack.debug: BUILD =============================== OUTPUT BEGIN =============================== lapack.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug lapack.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 8/11 Test #3: affinity.debug ...................***Failed 1.03 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10764: tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3674: affinity.debug.run] Error 2 Test affinity.debug: BUILD =============================== OUTPUT BEGIN =============================== affinity.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug affinity.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 9/11 Test #6: p4est.debug ......................***Failed 1.04 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:11120: tests/quick_tests/CMakeFiles/p4est.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3817: p4est.debug.run] Error 2 Test p4est.debug: BUILD =============================== OUTPUT BEGIN =============================== p4est.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug p4est.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 10/11 Test #9: umfpack.debug ....................***Failed 1.10 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10441: tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3544: umfpack.debug.run] Error 2 Test umfpack.debug: BUILD =============================== OUTPUT BEGIN =============================== umfpack.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug umfpack.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 11/11 Test #1: step.debug .......................***Failed 1.12 sec gmake[6]: *** read jobs pipe: Bad file descriptor. Stop. gmake[6]: *** Waiting for unfinished jobs.... gmake[5]: *** [CMakeFiles/Makefile2:10829: tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2 gmake[4]: *** [Makefile:3700: step.debug.run] Error 2 Test step.debug: BUILD =============================== OUTPUT BEGIN =============================== step.debug: BUILD failed. Output: [ 1%] Built target obj_boost_iostreams_debug step.debug: ****** BUILD failed ******* =============================== OUTPUT END =============================== Expected stage PASSED - aborting CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/cmake/scripts/run_test.cmake:140 (MESSAGE): *** abort 0% tests passed, 11 tests failed out of 11 Total Test time (real) = 1.13 sec The following tests FAILED: 1 - step.debug (Failed) 2 - step.release (Failed) 3 - affinity.debug (Failed) 4 - mpi.debug (Failed) 5 - tbb.debug (Failed) 6 - p4est.debug (Failed) 7 - step-petsc.debug (Failed) 8 - lapack.debug (Failed) 9 - umfpack.debug (Failed) 10 - hdf5.debug (Failed) 11 - boost_zlib.debug (Failed) Errors while running CTest *************************************************************************** ** Error: Some of the quick tests failed. ** *************************************************************************** Please scroll up or check the file tests/quick_tests/quicktests.log for the error messages. If you are unable to fix the problems, see the FAQ or write to the mailing list linked at http://www.dealii.org The affinity test can fail when you are linking in a library like BLAS which uses OpenMP. Even without calling any BLAS functions, OpenMP messes with the thread affinity which causes TBB to run single-threaded only. You can fix this by exporting OMP_NUM_THREADS=1. Also see GOMP_CPU_AFFINITY and OMP_PROC_BIND. The p4est test can fail if you are running an OpenMPI version before 1.5. This is a known problem and the only work around is to update to a more recent version or use a different MPI library like MPICH. Additional information about PETSc issues is available at: http://www.dealii.org/developer/external-libs/petsc.html CMake Error at /global/project/projectdirs/m2360/packagesCPFE/dealii/tests/quick_tests/run.cmake:78 (MESSAGE): make[3]: *** [tests/quick_tests/CMakeFiles/test.dir/build.make:58: tests/quick_tests/CMakeFiles/test] Error 1 make[2]: *** [CMakeFiles/Makefile2:10240: tests/quick_tests/CMakeFiles/test.dir/all] Error 2 make[1]: *** [CMakeFiles/Makefile2:10247: tests/quick_tests/CMakeFiles/test.dir/rule] Error 2 make: *** [Makefile:3466: test] Error 2