[dchip message 493] SNP 6.0 misc errors

[SJ]

I have downloaded the cdf from affymetrix library folder.
I have downloaded the SNP info and genome info files from dChip and
selected them in open group and chromosome options as instructed.
I don't have the summary file opened.
I notice that the .ini file is on my desktop where as i have selected
the output to go into one of the shared folders form my lab on a
server. could this be the problem with some of the errors.

{Open group exome QC2
Treat this array type as 'SNP 6.0'
Converting CDF file '\\Dom.wustl.edu\renal\Renal\Jainlab\Sanjay Data
\exome sequencing\GWAS\chipData_17959-17959\GenomeWideSNP_6.cdf' into
dChip binary format for faster access...
Not a CDF file or not in text format
Reading binary CDF file...
Array has 2572 rows and 2680 columns
Unit 1856000
Saving \\Dom.wustl.edu\renal\Renal\Jainlab\Sanjay Data\exome
sequencing\GWAS\chipData_17959-17959\GenomeWideSNP_6.cdf.bin ...

Search and extract 'CEL' probe data files of chip type
'GenomeWideSNP_6' in '\\dom.wustl.edu\renal\Renal\Jainlab\Sanjay Data
\exome sequencing\GWAS\chipData_17959-17959'...

Found 1: \\dom.wustl.edu\renal\Renal\Jainlab\Sanjay Data\exome
sequencing\GWAS\chipData_17959-17959\17959.CEL
Reading CEL file...
Reading Command Console Generic Data File Format
Column 2650
Affymetrix SNP call file '\\dom.wustl.edu\renal\Renal\Jainlab
\Sanjay Data\exome sequencing\GWAS\chipData_17959-17959\17959.txt' not
found; you may set call file suffix at 'Open group', such as '.txt'
Set rest genotypes to No Call; can use 'Analysis/Get external
data' to read a SNP call file and save to DCP file after 'Open group'

Writing file '\dom.wustl.edu\renal\Renal\Jainlab\Sanjay Data\exome
sequencing\GWAS\exome QC2_array_summary.xls' failed. Possibly the
file is open in Excel or wrong directory name

Treat all the 1 arrays as 1 samples and 1 sample groups

Reading SNP information file '\\Dom.wustl.edu\renal\Renal\Jainlab
\Sanjay Data\exome sequencing\GWAS
\chipData_17959-17959\snp6_snp_info_na24_hg18.rar'...
This is not a SNP information file or not saved in tab-delimited
text format; Specify genome info file at 'Analysis/Chromosome' and
specify SNP info file at 'Open group/Other information'
Header line: Rar!
Finished in 00 hours 04 minutes 07 seconds}

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