INFO: CPU: Williams-MacBook-Pro.local
INFO: Crux version: 3.2-8aa66a2d
INFO: Sat Sep 19 11:32:52 PDT 2020
COMMAND LINE: /Users/wnoble/proj/crux-3.2.Darwin.x86_64/bin/crux tide-search --overwrite T --max-precursor-charge 3 --file-column T --top-match 1 --concat T --precursor-window 3 --precursor-window-type mz --remove-precursor-peak T yeast-01.ms2 yeast_ind --output-dir crux --mz-bin-width 1.0005079
INFO: Beginning tide-search.
INFO: Running tide-search...
INFO: Number of Threads: 8
INFO: Reading index yeast_ind
INFO: Read 6734 target proteins
WARNING: The file 'crux/tide-search.txt' already exists and will be overwritten.
INFO: Converting yeast-01.ms2 to spectrumrecords format
INFO: Elapsed time starting conversion: 0.12 s
INFO: Reading spectrum file crux/yeast-01.ms2.spectrumrecords.tmp.
INFO: Read 69705 spectra.
INFO: Starting search.
INFO: 1000 spectrum-charge combinations searched, 1% complete
INFO: 2000 spectrum-charge combinations searched, 3% complete
INFO: 3000 spectrum-charge combinations searched, 4% complete
INFO: 4000 spectrum-charge combinations searched, 6% complete
INFO: 5000 spectrum-charge combinations searched, 7% complete
INFO: 6000 spectrum-charge combinations searched, 9% complete
INFO: 7000 spectrum-charge combinations searched, 10% complete
INFO: 8000 spectrum-charge combinations searched, 11% complete
INFO: 9000 spectrum-charge combinations searched, 13% complete
INFO: 10000 spectrum-charge combinations searched, 14% complete
INFO: 11000 spectrum-charge combinations searched, 16% complete
INFO: 12000 spectrum-charge combinations searched, 17% complete
INFO: 13000 spectrum-charge combinations searched, 19% complete
INFO: 14000 spectrum-charge combinations searched, 20% complete
INFO: 15000 spectrum-charge combinations searched, 22% complete
INFO: 16000 spectrum-charge combinations searched, 23% complete
INFO: 17000 spectrum-charge combinations searched, 24% complete
INFO: 18000 spectrum-charge combinations searched, 26% complete
INFO: 19000 spectrum-charge combinations searched, 27% complete
INFO: 20000 spectrum-charge combinations searched, 29% complete
INFO: 21000 spectrum-charge combinations searched, 30% complete
INFO: 22000 spectrum-charge combinations searched, 32% complete
INFO: 23000 spectrum-charge combinations searched, 33% complete
INFO: 24000 spectrum-charge combinations searched, 34% complete
INFO: 25000 spectrum-charge combinations searched, 36% complete
INFO: 26000 spectrum-charge combinations searched, 37% complete
INFO: 27000 spectrum-charge combinations searched, 39% complete
INFO: 28000 spectrum-charge combinations searched, 40% complete
INFO: 29000 spectrum-charge combinations searched, 42% complete
INFO: 30000 spectrum-charge combinations searched, 43% complete
INFO: 31000 spectrum-charge combinations searched, 44% complete
INFO: 32000 spectrum-charge combinations searched, 46% complete
INFO: 33000 spectrum-charge combinations searched, 47% complete
INFO: 34000 spectrum-charge combinations searched, 49% complete
INFO: 35000 spectrum-charge combinations searched, 50% complete
INFO: 36000 spectrum-charge combinations searched, 52% complete
INFO: 37000 spectrum-charge combinations searched, 53% complete
INFO: 38000 spectrum-charge combinations searched, 55% complete
INFO: 39000 spectrum-charge combinations searched, 56% complete
INFO: 40000 spectrum-charge combinations searched, 57% complete
INFO: 41000 spectrum-charge combinations searched, 59% complete
INFO: 42000 spectrum-charge combinations searched, 60% complete
INFO: 43000 spectrum-charge combinations searched, 62% complete
INFO: 44000 spectrum-charge combinations searched, 63% complete
INFO: 45000 spectrum-charge combinations searched, 65% complete
INFO: 46000 spectrum-charge combinations searched, 66% complete
INFO: 47000 spectrum-charge combinations searched, 67% complete
INFO: 48000 spectrum-charge combinations searched, 69% complete
INFO: 49000 spectrum-charge combinations searched, 70% complete
INFO: 50000 spectrum-charge combinations searched, 72% complete
INFO: 51000 spectrum-charge combinations searched, 73% complete
INFO: 52000 spectrum-charge combinations searched, 75% complete
INFO: 53000 spectrum-charge combinations searched, 76% complete
INFO: 54000 spectrum-charge combinations searched, 77% complete
INFO: 55000 spectrum-charge combinations searched, 79% complete
INFO: 56000 spectrum-charge combinations searched, 80% complete
INFO: 57000 spectrum-charge combinations searched, 82% complete
INFO: 58000 spectrum-charge combinations searched, 83% complete
INFO: 59000 spectrum-charge combinations searched, 85% complete
INFO: 60000 spectrum-charge combinations searched, 86% complete
INFO: 61000 spectrum-charge combinations searched, 88% complete
INFO: 62000 spectrum-charge combinations searched, 89% complete
INFO: 63000 spectrum-charge combinations searched, 90% complete
INFO: 64000 spectrum-charge combinations searched, 92% complete
INFO: 65000 spectrum-charge combinations searched, 93% complete
INFO: 66000 spectrum-charge combinations searched, 95% complete
INFO: [Thread 2]: Deleted 553 precursor, 0 isotope and 2552 out-of-range peaks.
INFO: [Thread 2]: Retained 99.8806% of peaks.
INFO: [Thread 1]: Deleted 523 precursor, 0 isotope and 2627 out-of-range peaks.
INFO: [Thread 1]: Retained 99.8794% of peaks.
INFO: [Thread 6]: Deleted 446 precursor, 0 isotope and 2024 out-of-range peaks.
INFO: [Thread 6]: Retained 99.9055% of peaks.
INFO: 67000 spectrum-charge combinations searched, 96% complete
INFO: 68000 spectrum-charge combinations searched, 98% complete
INFO: [Thread 4]: Deleted 496 precursor, 0 isotope and 2548 out-of-range peaks.
INFO: [Thread 4]: Retained 99.883% of peaks.
INFO: 69000 spectrum-charge combinations searched, 99% complete
INFO: [Thread 3]: Deleted 474 precursor, 0 isotope and 2585 out-of-range peaks.
INFO: [Thread 3]: Retained 99.882% of peaks.
INFO: [Thread 0]: Deleted 530 precursor, 0 isotope and 2184 out-of-range peaks.
INFO: [Thread 0]: Retained 99.8963% of peaks.
INFO: [Thread 5]: Deleted 484 precursor, 0 isotope and 2644 out-of-range peaks.
INFO: [Thread 5]: Retained 99.8813% of peaks.
INFO: [Thread 7]: Deleted 510 precursor, 0 isotope and 2400 out-of-range peaks.
INFO: [Thread 7]: Retained 99.8885% of peaks.
INFO: Time per spectrum-charge combination: 0.000521 s.
INFO: Average number of candidates per spectrum-charge combination: 1525.127563 
INFO: Elapsed time: 36.4 s
INFO: Finished crux tide-search.
INFO: Return Code:0