INFO: CPU: Williams-MacBook-Pro.local
INFO: Crux version: 3.2-8aa66a2d
INFO: Sat Sep 19 11:26:07 PDT 2020
COMMAND LINE: /Users/wnoble/proj/crux-3.2.Darwin.x86_64/bin/crux tide-index --decoy-format shuffle --enzyme trypsin --max-length 21 yeast.fasta yeast_ind
INFO: Beginning tide-index.
INFO: Running tide-index...
INFO: Writing results to output directory 'yeast_ind'.
INFO: Reading yeast.fasta and computing unmodified peptides...
INFO: Ignoring 6 peptide sequences containing unrecognized characters.
INFO: Generated 145581 targets, including duplicates.
INFO: Failed to generate decoys for 33 low complexity peptides.
INFO: Generated 136320 decoys.
INFO: Writing decoy fasta...
INFO: Generating 1 decoy per target
INFO: Reading proteins
INFO: Wrote 100000 peptides
INFO: Wrote 200000 peptides
INFO: Skipped 9228 duplicate targets and 204 duplicate decoys.
INFO: Wrote 136353 targets and 136116 decoys.
INFO: Precomputing theoretical spectra...
INFO: Elapsed time: 2.55 s
INFO: Finished crux tide-index.
INFO: Return Code:0