INFO: CPU: DESKTOP-52519M8
INFO: Crux version: 3.2-e786b8b
INFO: Sun 11/24/2019 
COMMAND LINE: crux pipeline --output-dir test_200_2000 --search-engine tide-search --precursor-window-type mz --precursor-window 0.6 --mz-bin-width 1.0005079 --add_C_cysteine +57.021464 --variable_mod01 +15.995 M 1 3 --max-precursor-charge 3 --precursor_charge 2 3 --override_charge 1 C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey1of3_1.raw C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey2of3_1.raw C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey3of3_1.raw human-index
INFO: Beginning pipeline.
INFO: Running pipeline with the following steps:
INFO: --> tide-search
INFO: --> percolator
INFO: Running tide-search...
INFO: Search will be run with the following files against database 'human-index':
INFO: --> C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey1of3_1.raw
INFO: --> C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey2of3_1.raw
INFO: --> C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey3of3_1.raw
INFO: Running tide-search...
INFO: Number of Threads: 20
INFO: Reading index human-index
INFO: Read 154527 target proteins
INFO: Converting C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey1of3_1.raw to spectrumrecords format
INFO: Elapsed time starting conversion: 3.25 s
WARNING: Spectrum 2 has no charge state. Calculating charge
INFO: Converting C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey2of3_1.raw to spectrumrecords format
INFO: Elapsed time starting conversion: 330 s
INFO: Converting C:\Users\enduser\Documents\ProteomeDiscoverer\191011_diaopt\1.5DaPrecursorTolerance\scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey3of3_1.raw to spectrumrecords format
INFO: Elapsed time starting conversion: 580 s
INFO: Reading spectrum file test_200_2000/scanrange_200to2000_191010_Th_60min_DIA_200to2000_1Da_noOverlap_survey1of3_1.raw.spectrumrecords.tmp.
INFO: Read 423210 spectra.
INFO: Starting search.
INFO: 1000 spectrum-charge combinations searched, 0% complete
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