cbioportal-container | Running: /bin/sh -c java -Xms2g -Xmx4g -Dauthenticate=noauthsessionservice -Dsession.service.url=http://cbioportal-session:5000/api/sessions/my_portal/ -jar webapp-runner.jar -AmaxHttpHeaderSize=16384 -AconnectionTimeout=20000 --enable-compression /cbioportal-webapp cbioportal-container | [0.002s][warning][os,thread] Failed to start thread "GC Thread3#0" - pthread_create failed (EPERM) for attributes: stacksize: 1024k, guardsize: 4k, detached. cbioportal-container | # cbioportal-container | # There is insufficient memory for the Java Runtime Environment to continue. cbioportal-container | # Cannot create worker GC thread. Out of system resources. cbioportal-container | # Can not save log file, dump to screen.. cbioportal-container | # cbioportal-container | # There is insufficient memory for the Java Runtime Environment to continue. cbioportal-container | # Cannot create worker GC thread. Out of system resources. cbioportal-container | # Possible reasons: cbioportal-container | # The system is out of physical RAM or swap space cbioportal-container | # The process is running with CompressedOops enabled, and the Java Heap may be blocking the growth of the native heap cbioportal-container | # Possible solutions: cbioportal-container | # Reduce memory load on the system cbioportal-container | # Increase physical memory or swap space cbioportal-container | # Check if swap backing store is full cbioportal-container | # Decrease Java heap size (-Xmx/-Xms) cbioportal-container | # Decrease number of Java threads cbioportal-container | # Decrease Java thread stack sizes (-Xss) cbioportal-container | # Set larger code cache with -XX:ReservedCodeCacheSize= cbioportal-container | # JVM is running with Unscaled Compressed Oops mode in which the Java heap is cbioportal-container | # placed in the first 4GB address space. The Java Heap base address is the cbioportal-container | # maximum limit for the native heap growth. Please use -XX:HeapBaseMinAddress cbioportal-container | # to set the Java Heap base and to place the Java Heap above 4GB virtual address. cbioportal-container | # This output file may be truncated or incomplete. cbioportal-container | # cbioportal-container | # Out of Memory Error (workerManager.hpp:70), pid=99, tid=99 cbioportal-container | # cbioportal-container | # JRE version: (11.0.17+8) (build ) cbioportal-container | # Java VM: OpenJDK 64-Bit Server VM (11.0.17+8, mixed mode, sharing, tiered, compressed oops, g1 gc, linux-amd64) cbioportal-container | # Core dump will be written. Default location: //core cbioportal-container | # cbioportal-container | cbioportal-container | --------------- S U M M A R Y ------------ cbioportal-container | cbioportal-container | Command Line: -Xms4g -Xmx8g -Dauthenticate=noauthsessionservice -Dsession.service.url=http://cbioportal-session:5000/api/sessions/my_portal/ webapp-runner.jar -AmaxHttpHeaderSize=16384 -AconnectionTimeout=20000 --enable-compression /cbioportal-webapp cbioportal-container | cbioportal-container | Host: AMD EPYC 7702 64-Core Processor, 8 cores, 31G, Ubuntu 22.04.1 LTS cbioportal-container | Time: Fri Jan 27 00:04:22 2023 UTC elapsed time: 0.002709 seconds (0d 0h 0m 0s) cbioportal-container | cbioportal-container | --------------- T H R E A D --------------- cbioportal-container | cbioportal-container | Current thread (0x000055b1d8d64000): JavaThread "Unknown thread" [_thread_in_vm, id=99, stack(0x00007ffe29c05000,0x00007ffe2a404000)] cbioportal-container | cbioportal-container | Stack: [0x00007ffe29c05000,0x00007ffe2a404000], sp=0x00007ffe2a3fe2f0, free space=8164k cbioportal-container | Native frames: (J=compiled Java code, A=aot compiled Java code, j=interpreted, Vv=VM code, C=native code) cbioportal-container | V [libjvm.so+0xf4893a] VMError::report_and_die(int, char const*, char const*, __va_list_tag*, Thread*, unsigned char*, void*, void*, char const*, int, unsigned long)+0x1ca cbioportal-container | V [libjvm.so+0xf497fb] VMError::report_and_die(Thread*, char const*, int, unsigned long, VMErrorType, char const*, __va_list_tag*)+0x2b cbioportal-container | V [libjvm.so+0x6d4f35] report_vm_out_of_memory(char const*, int, unsigned long, VMErrorType, char const*, ...)+0xd5 cbioportal-container | V [libjvm.so+0xf75e2b] AbstractWorkGang::add_workers(unsigned int, bool)+0x14b cbioportal-container | V [libjvm.so+0x7b0c85] G1CollectedHeap::G1CollectedHeap(G1CollectorPolicy*)+0x5b5 cbioportal-container | V [libjvm.so+0x7a2779] G1Arguments::create_heap()+0x69 cbioportal-container | V [libjvm.so+0xf04081] Universe::initialize_heap()+0x31 cbioportal-container | V [libjvm.so+0xf04336] universe_init()+0x46 cbioportal-container | V [libjvm.so+0x8aa5c7] init_globals()+0x57 cbioportal-container | V [libjvm.so+0xedb877] Threads::create_vm(JavaVMInitArgs*, bool*)+0x357 cbioportal-container | V [libjvm.so+0x968202] JNI_CreateJavaVM+0x52 cbioportal-container | C [libjli.so+0x49af] JavaMain+0x8f cbioportal-container | C [libjli.so+0x9d94] CallJavaMainInNewThread+0x74 cbioportal-container | C [libjli.so+0x637d] ContinueInNewThread+0x4d cbioportal-container | C [libjli.so+0x7a00] JLI_Launch+0x1470 cbioportal-container | C [java+0xa73] cbioportal-container | cbioportal-container | cbioportal-container | --------------- P R O C E S S --------------- cbioportal-container | cbioportal-container | Threads class SMR info: cbioportal-container | _java_thread_list=0x000055b1d8d2b760, length=0, elements={ cbioportal-container | } cbioportal-container | cbioportal-container | Java Threads: ( => current thread ) cbioportal-container | cbioportal-container | Other Threads: cbioportal-container | cbioportal-container | =>0x000055b1d8d64000 (exited) JavaThread "Unknown thread" [_thread_in_vm, id=99, stack(0x00007ffe29c05000,0x00007ffe2a404000)] cbioportal-container | cbioportal-container | Threads with active compile tasks: cbioportal-container | cbioportal-container | VM state:not at safepoint (not fully initialized) cbioportal-container | cbioportal-container | VM Mutex/Monitor currently owned by a thread: None cbioportal-container | cbioportal-container | cbioportal-container | [error occurred during error reporting (printing compressed oops mode), id 0xb, SIGSEGV (0xb) at pc=0x00007f7f869029b3] cbioportal-container | cbioportal-container | GC Heap History (0 events): cbioportal-container | No events cbioportal-container | cbioportal-container | Deoptimization events (0 events): cbioportal-container | No events cbioportal-container | cbioportal-container | Classes redefined (0 events): cbioportal-container | No events cbioportal-container | cbioportal-container | Internal exceptions (0 events): cbioportal-container | No events cbioportal-container | cbioportal-container | Events (2 events): cbioportal-container | Event: 0.002 Protecting memory [0x00007ffe29c05000,0x00007ffe29c09000] with protection modes 0 cbioportal-container | Event: 0.002 Loaded shared library /opt/java/openjdk/lib/libzip.so cbioportal-container | cbioportal-container | cbioportal-container | Dynamic libraries: cbioportal-container | 55b1d703f000-55b1d7040000 r-xp 00000000 fc:01 1184151 /opt/java/openjdk/bin/java cbioportal-container | 55b1d7240000-55b1d7241000 r--p 00001000 fc:01 1184151 /opt/java/openjdk/bin/java cbioportal-container | 55b1d7241000-55b1d7242000 rw-p 00002000 fc:01 1184151 /opt/java/openjdk/bin/java cbioportal-container | 55b1d8d27000-55b1d8d9a000 rw-p 00000000 00:00 0 [heap] cbioportal-container | 7f7f6cf8e000-7f7f6d1fd000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f6d1fd000-7f7f6d46d000 rwxp 00000000 00:00 0 cbioportal-container | 7f7f6d46d000-7f7f6d78e000 ---p 00000000 00:00 0 cbioportal-container | 7f7f6d78e000-7f7f6d9fe000 rwxp 00000000 00:00 0 cbioportal-container | 7f7f6d9fe000-7f7f74cc5000 ---p 00000000 00:00 0 cbioportal-container | 7f7f74cc5000-7f7f74f35000 rwxp 00000000 00:00 0 cbioportal-container | 7f7f74f35000-7f7f7c1fd000 ---p 00000000 00:00 0 cbioportal-container | 7f7f7c1fd000-7f7f84a00000 r--s 00000000 fc:01 1184652 /opt/java/openjdk/lib/modules cbioportal-container | 7f7f84a00000-7f7f84a07000 r-xp 00000000 fc:01 1184651 /opt/java/openjdk/lib/libzip.so cbioportal-container | 7f7f84a07000-7f7f84c07000 ---p 00007000 fc:01 1184651 /opt/java/openjdk/lib/libzip.so cbioportal-container | 7f7f84c07000-7f7f84c08000 r--p 00007000 fc:01 1184651 /opt/java/openjdk/lib/libzip.so cbioportal-container | 7f7f84c08000-7f7f84c09000 rw-p 00008000 fc:01 1184651 /opt/java/openjdk/lib/libzip.so cbioportal-container | 7f7f84cb2000-7f7f84e00000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f84e00000-7f7f84e1b000 r-xp 00000000 fc:01 1184633 /opt/java/openjdk/lib/libjimage.so cbioportal-container | 7f7f84e1b000-7f7f8501a000 ---p 0001b000 fc:01 1184633 /opt/java/openjdk/lib/libjimage.so cbioportal-container | 7f7f8501a000-7f7f8501c000 r--p 0001a000 fc:01 1184633 /opt/java/openjdk/lib/libjimage.so cbioportal-container | 7f7f8501c000-7f7f8501d000 rw-p 0001c000 fc:01 1184633 /opt/java/openjdk/lib/libjimage.so cbioportal-container | 7f7f850fe000-7f7f850ff000 ---p 00000000 00:00 0 cbioportal-container | 7f7f850ff000-7f7f85200000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f85200000-7f7f85228000 r-xp 00000000 fc:01 1184629 /opt/java/openjdk/lib/libjava.so cbioportal-container | 7f7f85228000-7f7f85428000 ---p 00028000 fc:01 1184629 /opt/java/openjdk/lib/libjava.so cbioportal-container | 7f7f85428000-7f7f85429000 r--p 00028000 fc:01 1184629 /opt/java/openjdk/lib/libjava.so cbioportal-container | 7f7f85429000-7f7f8542a000 rw-p 00029000 fc:01 1184629 /opt/java/openjdk/lib/libjava.so cbioportal-container | 7f7f8542a000-7f7f8542b000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f85515000-7f7f8551a000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f8551a000-7f7f85600000 ---p 00000000 00:00 0 cbioportal-container | 7f7f85600000-7f7f8560d000 r-xp 00000000 fc:01 1184650 /opt/java/openjdk/lib/libverify.so cbioportal-container | 7f7f8560d000-7f7f8580c000 ---p 0000d000 fc:01 1184650 /opt/java/openjdk/lib/libverify.so cbioportal-container | 7f7f8580c000-7f7f8580e000 r--p 0000c000 fc:01 1184650 /opt/java/openjdk/lib/libverify.so cbioportal-container | 7f7f8580e000-7f7f8580f000 rw-p 0000e000 fc:01 1184650 /opt/java/openjdk/lib/libverify.so cbioportal-container | 7f7f85815000-7f7f8581a000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f8581a000-7f7f85900000 ---p 00000000 00:00 0 cbioportal-container | 7f7f85900000-7f7f85a00000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f85a00000-7f7f86c78000 r-xp 00000000 fc:01 1184664 /opt/java/openjdk/lib/server/libjvm.so cbioportal-container | 7f7f86c78000-7f7f86e78000 ---p 01278000 fc:01 1184664 /opt/java/openjdk/lib/server/libjvm.so cbioportal-container | 7f7f86e78000-7f7f86f3d000 r--p 01278000 fc:01 1184664 /opt/java/openjdk/lib/server/libjvm.so cbioportal-container | 7f7f86f3d000-7f7f86f78000 rw-p 0133d000 fc:01 1184664 /opt/java/openjdk/lib/server/libjvm.so cbioportal-container | 7f7f86f78000-7f7f86fcf000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f86fd8000-7f7f87000000 r--p 00000000 fc:01 1059189 /usr/lib/x86_64-linux-gnu/libc.so.6 cbioportal-container | 7f7f87000000-7f7f87195000 r-xp 00028000 fc:01 1059189 /usr/lib/x86_64-linux-gnu/libc.so.6 cbioportal-container | 7f7f87195000-7f7f871ed000 r--p 001bd000 fc:01 1059189 /usr/lib/x86_64-linux-gnu/libc.so.6 cbioportal-container | 7f7f871ed000-7f7f871f1000 r--p 00214000 fc:01 1059189 /usr/lib/x86_64-linux-gnu/libc.so.6 cbioportal-container | 7f7f871f1000-7f7f871f3000 rw-p 00218000 fc:01 1059189 /usr/lib/x86_64-linux-gnu/libc.so.6 cbioportal-container | 7f7f871f3000-7f7f87200000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f87200000-7f7f87210000 r-xp 00000000 fc:01 1184613 /opt/java/openjdk/lib/jli/libjli.so cbioportal-container | 7f7f87210000-7f7f8740f000 ---p 00010000 fc:01 1184613 /opt/java/openjdk/lib/jli/libjli.so cbioportal-container | 7f7f8740f000-7f7f87410000 r--p 0000f000 fc:01 1184613 /opt/java/openjdk/lib/jli/libjli.so cbioportal-container | 7f7f87410000-7f7f87411000 rw-p 00010000 fc:01 1184613 /opt/java/openjdk/lib/jli/libjli.so cbioportal-container | 7f7f87488000-7f7f8748d000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f8748d000-7f7f87494000 ---p 00000000 00:00 0 cbioportal-container | 7f7f87494000-7f7f8749c000 rw-s 00000000 fc:01 1310871 /tmp/hsperfdata_root/99 cbioportal-container | 7f7f8749c000-7f7f8749d000 r--p 00000000 fc:01 1059286 /usr/lib/x86_64-linux-gnu/librt.so.1 cbioportal-container | 7f7f8749d000-7f7f8749e000 r-xp 00001000 fc:01 1059286 /usr/lib/x86_64-linux-gnu/librt.so.1 cbioportal-container | 7f7f8749e000-7f7f8749f000 r--p 00002000 fc:01 1059286 /usr/lib/x86_64-linux-gnu/librt.so.1 cbioportal-container | 7f7f8749f000-7f7f874a0000 r--p 00002000 fc:01 1059286 /usr/lib/x86_64-linux-gnu/librt.so.1 cbioportal-container | 7f7f874a0000-7f7f874a1000 rw-p 00003000 fc:01 1059286 /usr/lib/x86_64-linux-gnu/librt.so.1 cbioportal-container | 7f7f874a1000-7f7f874af000 r--p 00000000 fc:01 1059241 /usr/lib/x86_64-linux-gnu/libm.so.6 cbioportal-container | 7f7f874af000-7f7f8752b000 r-xp 0000e000 fc:01 1059241 /usr/lib/x86_64-linux-gnu/libm.so.6 cbioportal-container | 7f7f8752b000-7f7f87586000 r--p 0008a000 fc:01 1059241 /usr/lib/x86_64-linux-gnu/libm.so.6 cbioportal-container | 7f7f87586000-7f7f87587000 r--p 000e4000 fc:01 1059241 /usr/lib/x86_64-linux-gnu/libm.so.6 cbioportal-container | 7f7f87587000-7f7f87588000 rw-p 000e5000 fc:01 1059241 /usr/lib/x86_64-linux-gnu/libm.so.6 cbioportal-container | 7f7f87588000-7f7f8758c000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f8758c000-7f7f8758d000 r--p 00000000 fc:01 1059203 /usr/lib/x86_64-linux-gnu/libdl.so.2 cbioportal-container | 7f7f8758d000-7f7f8758e000 r-xp 00001000 fc:01 1059203 /usr/lib/x86_64-linux-gnu/libdl.so.2 cbioportal-container | 7f7f8758e000-7f7f8758f000 r--p 00002000 fc:01 1059203 /usr/lib/x86_64-linux-gnu/libdl.so.2 cbioportal-container | 7f7f8758f000-7f7f87590000 r--p 00002000 fc:01 1059203 /usr/lib/x86_64-linux-gnu/libdl.so.2 cbioportal-container | 7f7f87590000-7f7f87591000 rw-p 00003000 fc:01 1059203 /usr/lib/x86_64-linux-gnu/libdl.so.2 cbioportal-container | 7f7f87591000-7f7f87592000 r--p 00000000 fc:01 1059284 /usr/lib/x86_64-linux-gnu/libpthread.so.0 cbioportal-container | 7f7f87592000-7f7f87593000 r-xp 00001000 fc:01 1059284 /usr/lib/x86_64-linux-gnu/libpthread.so.0 cbioportal-container | 7f7f87593000-7f7f87594000 r--p 00002000 fc:01 1059284 /usr/lib/x86_64-linux-gnu/libpthread.so.0 cbioportal-container | 7f7f87594000-7f7f87595000 r--p 00002000 fc:01 1059284 /usr/lib/x86_64-linux-gnu/libpthread.so.0 cbioportal-container | 7f7f87595000-7f7f87596000 rw-p 00003000 fc:01 1059284 /usr/lib/x86_64-linux-gnu/libpthread.so.0 cbioportal-container | 7f7f87596000-7f7f87598000 r--p 00000000 fc:01 1059320 /usr/lib/x86_64-linux-gnu/libz.so.1.2.11 cbioportal-container | 7f7f87598000-7f7f875a9000 r-xp 00002000 fc:01 1059320 /usr/lib/x86_64-linux-gnu/libz.so.1.2.11 cbioportal-container | 7f7f875a9000-7f7f875af000 r--p 00013000 fc:01 1059320 /usr/lib/x86_64-linux-gnu/libz.so.1.2.11 cbioportal-container | 7f7f875af000-7f7f875b0000 ---p 00019000 fc:01 1059320 /usr/lib/x86_64-linux-gnu/libz.so.1.2.11 cbioportal-container | 7f7f875b0000-7f7f875b1000 r--p 00019000 fc:01 1059320 /usr/lib/x86_64-linux-gnu/libz.so.1.2.11 cbioportal-container | 7f7f875b1000-7f7f875b2000 rw-p 0001a000 fc:01 1059320 /usr/lib/x86_64-linux-gnu/libz.so.1.2.11 cbioportal-container | 7f7f875b3000-7f7f875b4000 ---p 00000000 00:00 0 cbioportal-container | 7f7f875b4000-7f7f875b5000 r--p 00000000 00:00 0 cbioportal-container | 7f7f875b5000-7f7f875b7000 rw-p 00000000 00:00 0 cbioportal-container | 7f7f875b7000-7f7f875b9000 r--p 00000000 fc:01 1059171 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 cbioportal-container | 7f7f875b9000-7f7f875e3000 r-xp 00002000 fc:01 1059171 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 cbioportal-container | 7f7f875e3000-7f7f875ee000 r--p 0002c000 fc:01 1059171 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 cbioportal-container | 7f7f875ef000-7f7f875f1000 r--p 00037000 fc:01 1059171 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 cbioportal-container | 7f7f875f1000-7f7f875f3000 rw-p 00039000 fc:01 1059171 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 cbioportal-container | 7ffe29c05000-7ffe29c09000 ---p 00000000 00:00 0 cbioportal-container | 7ffe2a3e4000-7ffe2a405000 rw-p 00000000 00:00 0 [stack] cbioportal-container | 7ffe2a518000-7ffe2a51b000 r--p 00000000 00:00 0 [vvar] cbioportal-container | 7ffe2a51b000-7ffe2a51d000 r-xp 00000000 00:00 0 [vdso] cbioportal-container | ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] cbioportal-container | cbioportal-container | cbioportal-container | VM Arguments: cbioportal-container | jvm_args: -Xms4g -Xmx8g -Dauthenticate=noauthsessionservice -Dsession.service.url=http://cbioportal-session:5000/api/sessions/my_portal/ cbioportal-container | java_command: webapp-runner.jar -AmaxHttpHeaderSize=16384 -AconnectionTimeout=20000 --enable-compression /cbioportal-webapp cbioportal-container | java_class_path (initial): webapp-runner.jar cbioportal-container | Launcher Type: SUN_STANDARD cbioportal-container | cbioportal-container | [Global flags] cbioportal-container | intx CICompilerCount = 4 {product} {ergonomic} cbioportal-container | uint G1ConcRefinementThreads = 8 {product} {ergonomic} cbioportal-container | size_t G1HeapRegionSize = 2097152 {product} {ergonomic} cbioportal-container | uintx GCDrainStackTargetSize = 64 {product} {ergonomic} cbioportal-container | size_t InitialHeapSize = 4294967296 {product} {command line} cbioportal-container | size_t MaxHeapSize = 8589934592 {product} {command line} cbioportal-container | size_t MinHeapDeltaBytes = 2097152 {product} {ergonomic} cbioportal-container | uintx NonNMethodCodeHeapSize = 5836300 {pd product} {ergonomic} cbioportal-container | uintx NonProfiledCodeHeapSize = 122910970 {pd product} {ergonomic} cbioportal-container | uintx ProfiledCodeHeapSize = 122910970 {pd product} {ergonomic} cbioportal-container | uintx ReservedCodeCacheSize = 251658240 {pd product} {ergonomic} cbioportal-container | bool SegmentedCodeCache = true {product} {ergonomic} cbioportal-container | bool UseCompressedClassPointers = true {lp64_product} {ergonomic} cbioportal-container | bool UseCompressedOops = true {lp64_product} {ergonomic} cbioportal-container | bool UseG1GC = true {product} {ergonomic} cbioportal-container | cbioportal-container | Logging: cbioportal-container | Log output configuration: cbioportal-container | #0: stdout all=warning uptime,level,tags cbioportal-container | #1: stderr all=off uptime,level,tags cbioportal-container | cbioportal-container | Environment Variables: cbioportal-container | JAVA_HOME=/opt/java/openjdk cbioportal-container | PATH=/opt/java/openjdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin cbioportal-container | LANG=en_US.UTF-8 cbioportal-container | LC_ALL=en_US.UTF-8 cbioportal-container | cbioportal-container | Signal Handlers: cbioportal-container | SIGSEGV: [libjvm.so+0xf4a5d0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO cbioportal-container | SIGBUS: [libjvm.so+0xf4a5d0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO cbioportal-container | SIGFPE: [libjvm.so+0xf4a5d0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO cbioportal-container | SIGPIPE: [libjvm.so+0xc6bff0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO cbioportal-container | SIGXFSZ: [libjvm.so+0xc6bff0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO cbioportal-container | SIGILL: [libjvm.so+0xf4a5d0], sa_mask[0]=11111111011111111101111111111110, sa_flags=SA_RESTART|SA_SIGINFO cbioportal-container | SIGUSR2: [libjvm.so+0xc6be90], sa_mask[0]=00000000000000000000000000000000, sa_flags=SA_RESTART|SA_SIGINFO cbioportal-container | SIGHUP: SIG_DFL, sa_mask[0]=00000000000000000000000000000000, sa_flags=none cbioportal-container | SIGINT: SIG_DFL, sa_mask[0]=00000000000000000000000000000000, sa_flags=none cbioportal-container | SIGTERM: SIG_DFL, sa_mask[0]=00000000000000000000000000000000, sa_flags=none cbioportal-container | SIGQUIT: SIG_DFL, sa_mask[0]=00000000000000000000000000000000, sa_flags=none cbioportal-container | cbioportal-container | cbioportal-container | --------------- S Y S T E M --------------- cbioportal-container | cbioportal-container | OS:DISTRIB_ID=Ubuntu cbioportal-container | DISTRIB_RELEASE=22.04 cbioportal-container | DISTRIB_CODENAME=jammy cbioportal-container | DISTRIB_DESCRIPTION="Ubuntu 22.04.1 LTS" cbioportal-container | uname:Linux 4.15.0-39-generic #42-Ubuntu SMP Tue Oct 23 15:48:01 UTC 2018 x86_64 cbioportal-container | OS uptime: 671 days 22:53 hours cbioportal-container | libc:glibc 2.35 NPTL 2.35 cbioportal-container | rlimit (soft/hard): STACK 8192k/infinity , CORE infinity/infinity , NPROC infinity/infinity , NOFILE 1048576/1048576 , AS infinity/infinity , CPU infinity/infinity , DATA infinity/infinity , FSIZE infinity/infinity , MEMLOCK 16384k/16384k cbioportal-container | load average:1.46 1.05 0.69 cbioportal-container | cbioportal-container | /proc/meminfo: cbioportal-container | MemTotal: 32939740 kB cbioportal-container | MemFree: 23934244 kB cbioportal-container | MemAvailable: 30954888 kB cbioportal-container | Buffers: 148952 kB cbioportal-container | Cached: 6316524 kB cbioportal-container | SwapCached: 0 kB cbioportal-container | Active: 3264524 kB cbioportal-container | Inactive: 4167532 kB cbioportal-container | Active(anon): 967280 kB cbioportal-container | Inactive(anon): 15476 kB cbioportal-container | Active(file): 2297244 kB cbioportal-container | Inactive(file): 4152056 kB cbioportal-container | Unevictable: 0 kB cbioportal-container | Mlocked: 0 kB cbioportal-container | SwapTotal: 95100 kB cbioportal-container | SwapFree: 95100 kB cbioportal-container | Dirty: 616 kB cbioportal-container | Writeback: 12 kB cbioportal-container | AnonPages: 962584 kB cbioportal-container | Mapped: 198940 kB cbioportal-container | Shmem: 16176 kB cbioportal-container | Slab: 1444664 kB cbioportal-container | SReclaimable: 1038184 kB cbioportal-container | SUnreclaim: 406480 kB cbioportal-container | KernelStack: 6480 kB cbioportal-container | PageTables: 9052 kB cbioportal-container | NFS_Unstable: 0 kB cbioportal-container | Bounce: 0 kB cbioportal-container | WritebackTmp: 0 kB cbioportal-container | CommitLimit: 16564968 kB cbioportal-container | Committed_AS: 3645620 kB cbioportal-container | VmallocTotal: 34359738367 kB cbioportal-container | VmallocUsed: 0 kB cbioportal-container | VmallocChunk: 0 kB cbioportal-container | HardwareCorrupted: 0 kB cbioportal-container | AnonHugePages: 0 kB cbioportal-container | ShmemHugePages: 0 kB cbioportal-container | ShmemPmdMapped: 0 kB cbioportal-container | CmaTotal: 0 kB cbioportal-container | CmaFree: 0 kB cbioportal-container | HugePages_Total: 0 cbioportal-container | HugePages_Free: 0 cbioportal-container | HugePages_Rsvd: 0 cbioportal-container | HugePages_Surp: 0 cbioportal-container | Hugepagesize: 2048 kB cbioportal-container | DirectMap4k: 616304 kB cbioportal-container | DirectMap2M: 20355072 kB cbioportal-container | DirectMap1G: 14680064 kB cbioportal-container | cbioportal-container | /sys/kernel/mm/transparent_hugepage/enabled: cbioportal-container | always [madvise] never cbioportal-container | /sys/kernel/mm/transparent_hugepage/defrag (defrag/compaction efforts parameter): cbioportal-container | always defer defer+madvise [madvise] never cbioportal-container | cbioportal-container | Process Memory: cbioportal-container | Virtual Size: 430116K (peak: 430116K) cbioportal-container | Resident Set Size: 18140K (peak: 18140K) (anon: 5504K, file: 12636K, shmem: 0K) cbioportal-container | Swapped out: 0K cbioportal-container | C-Heap outstanding allocations: 4222K, retained: 65K cbioportal-container | glibc malloc tunables: (default) cbioportal-container | cbioportal-container | /proc/sys/kernel/threads-max (system-wide limit on the number of threads): cbioportal-container | 257163 cbioportal-container | /proc/sys/vm/max_map_count (maximum number of memory map areas a process may have): cbioportal-container | 65530 cbioportal-container | /proc/sys/kernel/pid_max (system-wide limit on number of process identifiers): cbioportal-container | 32768 cbioportal-container | cbioportal-container | container (cgroup) information: cbioportal-container | container_type: cgroupv1 cbioportal-container | cpu_cpuset_cpus: 0-7 cbioportal-container | cpu_memory_nodes: 0 cbioportal-container | active_processor_count: 8 cbioportal-container | cpu_quota: no quota cbioportal-container | cpu_period: 100000 cbioportal-container | cpu_shares: no shares cbioportal-container | memory_limit_in_bytes: unlimited cbioportal-container | memory_and_swap_limit_in_bytes: not supported cbioportal-container | memory_soft_limit_in_bytes: unlimited cbioportal-container | memory_usage_in_bytes: 10140 k cbioportal-container | memory_max_usage_in_bytes: 12276 k cbioportal-container | maximum number of tasks: unlimited cbioportal-container | current number of tasks: 3 cbioportal-container | cbioportal-container | KVM virtualization detected cbioportal-container | Steal ticks since vm start: 0 cbioportal-container | Steal ticks percentage since vm start: 0.000 cbioportal-container | cbioportal-container | CPU:total 8 (initial active 8) (8 cores per cpu, 1 threads per core) family 23 model 49 stepping 0 microcode 0x1000065, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, avx, avx2, aes, clmul, mmxext, 3dnowpref, lzcnt, sse4a, tsc, bmi1, bmi2, adx, sha, fma cbioportal-container | CPU Model and flags from /proc/cpuinfo: cbioportal-container | model name : AMD EPYC 7702 64-Core Processor cbioportal-container | flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl cpuid extd_apicid pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw perfctr_core ssbd ibrs ibpb stibp vmmcall fsgsbase tsc_adjust bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr virt_ssbd arat npt nrip_save umip rdpid arch_capabilities cbioportal-container | Online cpus: cbioportal-container | 0-7 cbioportal-container | Offline cpus: cbioportal-container | cbioportal-container | BIOS frequency limitation: cbioportal-container | cbioportal-container | Frequency switch latency (ns): cbioportal-container | cbioportal-container | Available cpu frequencies: cbioportal-container | cbioportal-container | Current governor: cbioportal-container | cbioportal-container | Core performance/turbo boost: cbioportal-container | cbioportal-container | cbioportal-container | Memory: 4k page, physical 32939740k(23934244k free), swap 95100k(95100k free) cbioportal-container | cbioportal-container | vm_info: OpenJDK 64-Bit Server VM (11.0.17+8) for linux-amd64 JRE (11.0.17+8), built on Oct 19 2022 03:58:01 by "" with gcc 7.5.0 cbioportal-container | cbioportal-container | END.