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cBioPortal for Cancer Genomics Discussion Group
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This mailing list is for questions that are related to
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MAKEPEACE, Chloe (UNIVERSITY HOSPITAL SOUTHAMPTON NHS FOUNDATION TRUST)
,
Nikolaus Schultz
3
11:57 AM
Possible filtering issue in GENIE v20.0
Hi Nikki, Thanks for you quicky reply. I have copied a screenshot as my browser looks slightly
unread,
Possible filtering issue in GENIE v20.0
Hi Nikki, Thanks for you quicky reply. I have copied a screenshot as my browser looks slightly
11:57 AM
Dwaipayan Mukhopadhyay
,
Nikolaus Schultz
2
Oct 7
MSK-CHORD 2024 field definitions: SEQ_DATE and smoking-assessment timing
Dear Dwaipayan, In the MSK-CHORD, all events are defined relative to the time of sequencing - this
unread,
MSK-CHORD 2024 field definitions: SEQ_DATE and smoking-assessment timing
Dear Dwaipayan, In the MSK-CHORD, all events are defined relative to the time of sequencing - this
Oct 7
Aaron L
Oct 7
Re: [cbioportal] Error encountered. Please let us know about this error and how you got here
Ethar, is there any more detail you can provide us? It should have showed some error message. On Wed,
unread,
Re: [cbioportal] Error encountered. Please let us know about this error and how you got here
Ethar, is there any more detail you can provide us? It should have showed some error message. On Wed,
Oct 7
Chen, Joyce
,
Guizela Huelsz Prince
5
Oct 1
Cbio help
Hi Guizela, Morning! I utilized the cBio genetic ancestry labels in my study and have now received
unread,
Cbio help
Hi Guizela, Morning! I utilized the cBio genetic ancestry labels in my study and have now received
Oct 1
Francesca Colamartini
Sep 30
cBioportal user reported error
Dear cBioPortal Support Team, I am trying to export a table of MET alterations from cBioPortal, but I
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cBioportal user reported error
Dear cBioPortal Support Team, I am trying to export a table of MET alterations from cBioPortal, but I
Sep 30
Allen Chen
Sep 29
Pheochromocytoma and Paraganglioma (TCGA GDC, 2025) dataset not found
Dear Support, 2025 TCGA GDC missing only one of the 33 dataset https://www.cbioportal.org/study/
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Pheochromocytoma and Paraganglioma (TCGA GDC, 2025) dataset not found
Dear Support, 2025 TCGA GDC missing only one of the 33 dataset https://www.cbioportal.org/study/
Sep 29
Meryem Jradi
,
Tali Mazor
2
Sep 29
problem
Hi, Thanks for letting us know. However, I am not able to reproduce this error. Can you share exactly
unread,
problem
Hi, Thanks for letting us know. However, I am not able to reproduce this error. Can you share exactly
Sep 29
Azul Muiño
,
JJ Gao
4
Sep 24
Webinar Q&A
Hi Azul, Thanks for the update. You are right - the TCGA ones were included in the 2016 paper. About
unread,
Webinar Q&A
Hi Azul, Thanks for the update. You are right - the TCGA ones were included in the 2016 paper. About
Sep 24
James.Salter
,
Tali Mazor
2
Sep 24
Image Licence Request (590959)
Hi James, Images from our website can be used freely, see our FAQ: https://docs.cbioportal.org/user-
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Image Licence Request (590959)
Hi James, Images from our website can be used freely, see our FAQ: https://docs.cbioportal.org/user-
Sep 24
Ethar Hassan
,
Benjamin Gross
3
Sep 16
Question regarding out of memory during importing study to private cbioportal
Hi Ethar, Just a follow up. A tester of our importer after our migration to ClickHouse encountered
unread,
Question regarding out of memory during importing study to private cbioportal
Hi Ethar, Just a follow up. A tester of our importer after our migration to ClickHouse encountered
Sep 16
Lyu,Yue
,
Benjamin Gross
3
Sep 15
CancerSurvBench: TCGA clinical and molecular license scope
Hi Benjamin, Thank you for clarifying. We have contacted GDC and will follow up with them regarding
unread,
Completed
CancerSurvBench: TCGA clinical and molecular license scope
Hi Benjamin, Thank you for clarifying. We have contacted GDC and will follow up with them regarding
Sep 15
Tali Mazor
Sep 10
cBioPortal Webinar
The cBioPortal for Cancer Genomics (https://www.cbioportal.org) is excited to present an
unread,
Completed
cBioPortal Webinar
The cBioPortal for Cancer Genomics (https://www.cbioportal.org) is excited to present an
Sep 10
Benoit MIOTTO
,
Benjamin Gross
4
Sep 9
Question regarding statistical analysis to call DEG in group comparison.
Dear Benoit, Thank you for the clarification. I misunderstood your original question and thought you
unread,
Completed
Question regarding statistical analysis to call DEG in group comparison.
Dear Benoit, Thank you for the clarification. I misunderstood your original question and thought you
Sep 9
裴斐
,
de Bruijn, Ino
2
Sep 9
permission to use the cBioPortal logo
Hi Fei Pei, I emailed you the signed document directly. Hope that works! Best wishes, Ino From: 裴斐
unread,
Completed
permission to use the cBioPortal logo
Hi Fei Pei, I emailed you the signed document directly. Hope that works! Best wishes, Ino From: 裴斐
Sep 9
Nguyen, Kirsten
,
Benjamin Gross
3
Sep 8
Help with Treatment Information in cBioPortal
Hi Kirsten, Glad you found the data on your own. You can also find data (tsv files) directly in our
unread,
Completed
Help with Treatment Information in cBioPortal
Hi Kirsten, Glad you found the data on your own. You can also find data (tsv files) directly in our
Sep 8
Jake Reed
, …
skicdsicuration
4
Sep 2
MSKCC cBioPortal Question
Hi Jake, Thank you for sharing these details. Could you please provide us with access to the study on
unread,
MSKCC cBioPortal Question
Hi Jake, Thank you for sharing these details. Could you please provide us with access to the study on
Sep 2
Maria Grazia Giuffrida
, …
lisman...@gmail.com
3
Aug 28
error message
Maria, we just merged a PR that we hope will address the problem. We can't reproduce it so
unread,
error message
Maria, we just merged a PR that we hope will address the problem. We can't reproduce it so
Aug 28
裴斐
,
de Bruijn, Ino
3
Aug 26
Request for permission to use cBioPortal logo
Hi Fei Pei, Thanks for reaching out! Feel free to use the logo. See also: https://docs.cbioportal.org
unread,
Completed
Request for permission to use cBioPortal logo
Hi Fei Pei, Thanks for reaching out! Feel free to use the logo. See also: https://docs.cbioportal.org
Aug 26
Steve Neuhauser
,
de Bruijn, Ino
3
Aug 24
Organization of studies into groups on query / home page
Glad you got it to work! Let us know if there's anything else we can help with Best wishes, Ino
unread,
Organization of studies into groups on query / home page
Glad you got it to work! Let us know if there's anything else we can help with Best wishes, Ino
Aug 24
Anurag Saxena
,
lisman...@gmail.com
2
Aug 24
ClickHouse user authorization lookup fails when OAuth2 email claim contains uppercase characters
ok thanks! will look today. On Thursday, August 20, 2026 at 9:43:59 AM UTC-4 sax...@ccf.org wrote:
unread,
ClickHouse user authorization lookup fails when OAuth2 email claim contains uppercase characters
ok thanks! will look today. On Thursday, August 20, 2026 at 9:43:59 AM UTC-4 sax...@ccf.org wrote:
Aug 24
John Reber
,
Gaofei Zhao
3
Aug 24
Initializing external database
Reseeded external database, ensuring schema, seed and clickhouse were loaded in that order. When
unread,
Initializing external database
Reseeded external database, ensuring schema, seed and clickhouse were loaded in that order. When
Aug 24
Anurag Saxena
, …
Nasir, Zain-Ul-Abideen
6
Aug 24
Clickhouse dumps for cbioportal maintainers
Hi Anurag, Thanks for pointing out the inconsistencies. I'll get back to you soon with a fix and
unread,
Clickhouse dumps for cbioportal maintainers
Hi Anurag, Thanks for pointing out the inconsistencies. I'll get back to you soon with a fix and
Aug 24
Michal Inbar
,
Ruslan Forostianov
2
Aug 24
TMB plot display and Pan-Cancer study grouping
Dear Michael, Thank you for your question. For the TMB plot, please check the data type of TMB_SCORE
unread,
TMB plot display and Pan-Cancer study grouping
Dear Michael, Thank you for your question. For the TMB plot, please check the data type of TMB_SCORE
Aug 24
Dilini Gunatilake
,
Aaron L
3
Aug 21
Assign custom colours to groups
the color picker issue should be fixed now On Fri, Aug 21, 2026 at 3:27 PM lisman...@gmail.com <
unread,
Assign custom colours to groups
the color picker issue should be fixed now On Fri, Aug 21, 2026 at 3:27 PM lisman...@gmail.com <
Aug 21
Nicholas Bateman
,
Ramya Madupuri
2
Aug 19
Incorporating APOLLO into the cbioportal.org resource
Hi Nick, Thanks for reaching out and for your interest in contributing the APOLLO studies to
unread,
Incorporating APOLLO into the cbioportal.org resource
Hi Nick, Thanks for reaching out and for your interest in contributing the APOLLO studies to
Aug 19
Zenilman, Erin
, …
Pieter Lukasse
4
Aug 18
PedcBioPortal access
Hi Erin, I'm sorry to hear you are having issues with login and contacting support. I will find
unread,
PedcBioPortal access
Hi Erin, I'm sorry to hear you are having issues with login and contacting support. I will find
Aug 18
John Reber
,
de Bruijn, Ino
3
Aug 14
jar: command not found
Thanks for the update. I was doing an apt-get install jdk in the entrypoint.sh, but that was playing
unread,
jar: command not found
Thanks for the update. I was doing an apt-get install jdk in the entrypoint.sh, but that was playing
Aug 14
rababa...@icloud.com
, …
Gardner, Leah
5
Aug 14
cBioPortal user reported error
https://genie.cbioportal.org/results/mutations?cancer_study_list=genie_public&Z_SCORE_THRESHOLD=
unread,
cBioPortal user reported error
https://genie.cbioportal.org/results/mutations?cancer_study_list=genie_public&Z_SCORE_THRESHOLD=
Aug 14
Matteo Tiberti
,
de Bruijn, Ino
2
Aug 12
Variants for FAM86B2 map to two different chromosomes
Hi Matteo, Thanks for reaching out! This looks like a potential two-fold issue. It could be that some
unread,
Variants for FAM86B2 map to two different chromosomes
Hi Matteo, Thanks for reaching out! This looks like a potential two-fold issue. It could be that some
Aug 12
Jessica Gasparello
,
Sanne van der Stam
2
Aug 12
cBioPortal outage - SSL Certificate Expired on api.thehyve.nl
Hi Jessica, Thanks for reaching out. api.thehyve.nl has been expired since 2024 and not used anymore.
unread,
cBioPortal outage - SSL Certificate Expired on api.thehyve.nl
Hi Jessica, Thanks for reaching out. api.thehyve.nl has been expired since 2024 and not used anymore.
Aug 12