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cBioPortal for Cancer Genomics Discussion Group
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This mailing list is for questions that are related to
cbioportal.org
. In order to filter out spams, every message is moderated. If you don't see your message posted immediately, it will be moderated and posted later.
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John Reber
,
de Bruijn, Ino
3
Aug 14
jar: command not found
Thanks for the update. I was doing an apt-get install jdk in the entrypoint.sh, but that was playing
unread,
jar: command not found
Thanks for the update. I was doing an apt-get install jdk in the entrypoint.sh, but that was playing
Aug 14
John Reber
Aug 14
Initializing external database
Running cBioPortal locally with an external ClickHouse database server. Was having issues with
unread,
Initializing external database
Running cBioPortal locally with an external ClickHouse database server. Was having issues with
Aug 14
rababa...@icloud.com
, …
Gardner, Leah
5
Aug 14
cBioPortal user reported error
https://genie.cbioportal.org/results/mutations?cancer_study_list=genie_public&Z_SCORE_THRESHOLD=
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cBioPortal user reported error
https://genie.cbioportal.org/results/mutations?cancer_study_list=genie_public&Z_SCORE_THRESHOLD=
Aug 14
Matteo Tiberti
,
de Bruijn, Ino
2
Aug 12
Variants for FAM86B2 map to two different chromosomes
Hi Matteo, Thanks for reaching out! This looks like a potential two-fold issue. It could be that some
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Variants for FAM86B2 map to two different chromosomes
Hi Matteo, Thanks for reaching out! This looks like a potential two-fold issue. It could be that some
Aug 12
Jessica Gasparello
,
Sanne van der Stam
2
Aug 12
cBioPortal outage - SSL Certificate Expired on api.thehyve.nl
Hi Jessica, Thanks for reaching out. api.thehyve.nl has been expired since 2024 and not used anymore.
unread,
cBioPortal outage - SSL Certificate Expired on api.thehyve.nl
Hi Jessica, Thanks for reaching out. api.thehyve.nl has been expired since 2024 and not used anymore.
Aug 12
Claudia Huettner
,
Sanne van der Stam
2
Aug 12
System not performing search task
Hi Claudia, Apologies for the issue with the “Query by Gene” feature. We recently introduced stricter
unread,
System not performing search task
Hi Claudia, Apologies for the issue with the “Query by Gene” feature. We recently introduced stricter
Aug 12
Dilini Gunatilake
Aug 12
Assign custom colours to groups
Hi, I have difficulty in assigning custom colours for my groups. The tick box is disabled. Do you
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Assign custom colours to groups
Hi, I have difficulty in assigning custom colours for my groups. The tick box is disabled. Do you
Aug 12
Kiera Vassallo
,
Sanne van der Stam
3
Aug 12
TCGA PanCancer Atlas Studies query
Hi Kiera, Thank you for bringing this issue to our attention. Our team has resolved the underlying
unread,
TCGA PanCancer Atlas Studies query
Hi Kiera, Thank you for bringing this issue to our attention. Our team has resolved the underlying
Aug 12
fatema pharmacist
,
Sanne van der Stam
2
Aug 12
Query by gene not working
Hi Fatema, Thank you for bringing this issue to our attention. Our team has resolved the underlying
unread,
Query by gene not working
Hi Fatema, Thank you for bringing this issue to our attention. Our team has resolved the underlying
Aug 12
Kacey
,
de Bruijn, Ino
2
Aug 11
/ln?q= gene linkout failing with "Too Many Requests"
Hi Kacey, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
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/ln?q= gene linkout failing with "Too Many Requests"
Hi Kacey, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
Aug 11
Field, Chani (Health)
, …
de Bruijn, Ino
3
Aug 11
Query by Gene not working
Hi Chani, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
unread,
Query by Gene not working
Hi Chani, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
Aug 11
Madhur Bansal
,
de Bruijn, Ino
2
Aug 10
Regarding Slack invite not working
Hi Madhur, Thanks for letting us know about the slack invite issue. Will try to fix that For now I
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Regarding Slack invite not working
Hi Madhur, Thanks for letting us know about the slack invite issue. Will try to fix that For now I
Aug 10
Rebeca Santa Cruz
,
Sanne van der Stam
2
Aug 10
Error retrieving data
Hi Rebeca, It looks like it was a temporary server issue. I retried the steps, and everything seems
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Error retrieving data
Hi Rebeca, It looks like it was a temporary server issue. I retried the steps, and everything seems
Aug 10
Eugenio Logiudice
,
Sanne van der Stam
2
Aug 6
volunteer engineer
Hi Logiudice Eugenio, Thank you for reaching out to us. First and foremost, please accept our deepest
unread,
volunteer engineer
Hi Logiudice Eugenio, Thank you for reaching out to us. First and foremost, please accept our deepest
Aug 6
Zenilman, Erin
,
Tali Mazor
3
Aug 5
PedcBioPortal access
Hi Tali, I sent an email to that email address and did not receive a response. Is there any other
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PedcBioPortal access
Hi Tali, I sent an email to that email address and did not receive a response. Is there any other
Aug 5
Barbara Castro Carneiro
,
Tali Mazor
3
Aug 4
ERROR
Hi Tali, It worked now, thank you! Em ter., 4 de ago. de 2026 às 17:46, Tali Mazor <tma...@ds.dfci
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ERROR
Hi Tali, It worked now, thank you! Em ter., 4 de ago. de 2026 às 17:46, Tali Mazor <tma...@ds.dfci
Aug 4
Amal Kamal Abdel-Aziz
, …
de Bruijn, Ino
13
Aug 1
Inaccessible blank "cBioPortal" webpage in Egypt
Hi Ino and JJ Gao, I hope this email finds you well. I tried now to use the provided link above (
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Inaccessible blank "cBioPortal" webpage in Egypt
Hi Ino and JJ Gao, I hope this email finds you well. I tried now to use the provided link above (
Aug 1
Anurag Saxena
, …
Nasir, Zain-Ul-Abideen
4
Jul 29
Clickhouse dumps for cbioportal maintainers
Hi Anurag, I have been working on this. Should have an update for you soon. Thanks, Zain. Zain Nasir
unread,
Clickhouse dumps for cbioportal maintainers
Hi Anurag, I have been working on this. Should have an update for you soon. Thanks, Zain. Zain Nasir
Jul 29
Liu Liu
,
JJ Gao
3
Jul 28
Security token expired
Thank you, JJ. It works now. Best, Liu Sent from my iPhone On Jul 27, 2026, at 2:39 PM, JJ Gao <
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Security token expired
Thank you, JJ. It works now. Best, Liu Sent from my iPhone On Jul 27, 2026, at 2:39 PM, JJ Gao <
Jul 28
Matteo Tiberti
,
JJ Gao
3
Jul 24
NA genome assembly for some genomic mutations
Hi JJ, Thank you so much for the quick response and the information! Good to know it will be fixed
unread,
NA genome assembly for some genomic mutations
Hi JJ, Thank you so much for the quick response and the information! Good to know it will be fixed
Jul 24
Trevor Christ
, …
JJ Gao
14
Jul 22
cBioPortal user reported error
Hi Cameron, Thanks for reporting this to us. The link in your message seems working. You might have
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cBioPortal user reported error
Hi Cameron, Thanks for reporting this to us. The link in your message seems working. You might have
Jul 22
Boer, Elena
,
Nikolaus Schultz
4
Jul 16
Error accessing data
Hi Niki, Thank you for letting me know! Happy to hear this. Cheers, Elena Private Information From:
unread,
Error accessing data
Hi Niki, Thank you for letting me know! Happy to hear this. Cheers, Elena Private Information From:
Jul 16
hf123q
,
Nikolaus Schultz
3
Jul 16
来自hf123q的邮件
Hi, This issue has been resolved - thank you for your patience. It was related to a recent change in
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来自hf123q的邮件
Hi, This issue has been resolved - thank you for your patience. It was related to a recent change in
Jul 16
PUTRA, Hadi (CAMBRIDGE UNIVERSITY HOSPITALS NHS FOUNDATION TRUST)
, …
Lautensack, Elias
5
Jul 16
Errors in checking mutations on certain genes
Hi, That's nice to hear! Thanks for solving this so quickly. Best Elias. Von: Nikolaus Schultz
unread,
Errors in checking mutations on certain genes
Hi, That's nice to hear! Thanks for solving this so quickly. Best Elias. Von: Nikolaus Schultz
Jul 16
Soto Mangandi, Stephanie
,
Nikolaus Schultz
4
Jul 16
Data Error Message (7/15/2026)
This is wonderful news, thank you so much for your help, Niki! Best, Stephanie Stephanie Soto
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Data Error Message (7/15/2026)
This is wonderful news, thank you so much for your help, Niki! Best, Stephanie Stephanie Soto
Jul 16
Erdem KÖLEMEN
,
Ritika Kundra
2
Jul 16
reference
Hello Dr. Kolemen, The associated publication for this study is https://pubmed.ncbi.nlm.nih.gov/
unread,
reference
Hello Dr. Kolemen, The associated publication for this study is https://pubmed.ncbi.nlm.nih.gov/
Jul 16
Sailer, Megan R., MLS(ASCP)
,
Nikolaus Schultz
3
Jul 16
Oh no! We encountered an error.
Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have
unread,
Oh no! We encountered an error.
Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have
Jul 16
Vijayanarayanan, Anjanaa
,
Nikolaus Schultz
3
Jul 16
Error for queries
Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have
unread,
Error for queries
Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have
Jul 16
Nadiia Kazachkova
,
Nikolaus Schultz
3
Jul 16
cbio problem
Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have
unread,
cbio problem
Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have
Jul 16
Gao, Jianjiong/Epidemiology-Biostatistics
, …
Amal Kamal Abdel-Aziz
9
Jul 15
RE: Sudden difficulty loading cBioPortal
Good afternoon, I tried today again to access the cBioportal webpage from a different PC connected to
unread,
RE: Sudden difficulty loading cBioPortal
Good afternoon, I tried today again to access the cBioportal webpage from a different PC connected to
Jul 15