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cBioPortal for Cancer Genomics Discussion Group

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Mestrallet, Guillaume, … dssa...@niser.ac.in9

10:50 AM

Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

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Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

10:50 AM

Álvaro Fernández, Tim Kuijpers2

Apr 21

Issue with Data Link

Dear Alvaro, I believe your link is not working since it looks like the URL contains the same sub-url

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Issue with Data Link

Dear Alvaro, I believe your link is not working since it looks like the URL contains the same sub-url

Apr 21

Alyona Ivanova, Jessica Singh3

Apr 21

Uploading public data

Dear Jessica, Thank you for getting back to me! I was able to upload the data to cbioportal PMGC for

unread,

Uploading public data

Dear Jessica, Thank you for getting back to me! I was able to upload the data to cbioportal PMGC for

Apr 21

Mantri Pradeep, Jessica Singh2

Apr 20

Interest in contributing to cBioPortal | Request for Slack Invite

Hi Pradeep, Great to see your interest in contributing! I see you've already joined the Slack

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Interest in contributing to cBioPortal | Request for Slack Invite

Hi Pradeep, Great to see your interest in contributing! I see you've already joined the Slack

Apr 20

Md. Ashraful Hasan, Jessica Singh2

Apr 20

Unable to Retrieve ATRX Mutation Genomic Alteration Figure for LGG

Hi Md. Ashraful, Thanks for your message. Just to clarify, in the link you shared, ATRX mutation

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Unable to Retrieve ATRX Mutation Genomic Alteration Figure for LGG

Hi Md. Ashraful, Thanks for your message. Just to clarify, in the link you shared, ATRX mutation

Apr 20

丸山宏二, Jessica Singh2

Apr 20

Dear Maruyama, Thank you for your question. The dataset is formally referred to as the TCGA Pan-

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Dear Maruyama, Thank you for your question. The dataset is formally referred to as the TCGA Pan-

Apr 20

Elizabeth Battley, ole...@thehyve.nl3

Apr 16

Re: Error Message

Hi Elizabeth, Can you try them again? When I access the links I don't get any error: https://www.

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Re: Error Message

Hi Elizabeth, Can you try them again? When I access the links I don't get any error: https://www.

Apr 16

Lorena Magraner, … Acebedo, Alyssa8

Apr 16

AACR Project GENIE

Thank you very much Alyssa, I will have a look at the information. Preliminary view it looks really

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AACR Project GENIE

Thank you very much Alyssa, I will have a look at the information. Preliminary view it looks really

Apr 16

Maria Eduarda Gomes Oliveira, … Aaron L3

Apr 16

cBioPortal user reported error

Hi Maria, THanks for this report. I tried this link and it loaded for me. Can you try again? Did you

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cBioPortal user reported error

Hi Maria, THanks for this report. I tried this link and it loaded for me. Can you try again? Did you

Apr 16

Miller, Lance D, ole...@thehyve.nl2

Apr 16

Explore Selected Studies: Freq = NA

Hi Lance, Which studies are selecting when going to "Explore Selected Studies"? Best

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Explore Selected Studies: Freq = NA

Hi Lance, Which studies are selecting when going to "Explore Selected Studies"? Best

Apr 16

Luis Fernando Iglesias Martinez, … Ino de Bruijn4

Apr 16

Content in files are Git LFS pointers

It was an error on our side that we fixed. Thanks for reporting! El jue, 16 de abr de 2026, 9:52 am,

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Content in files are Git LFS pointers

It was an error on our side that we fixed. Thanks for reporting! El jue, 16 de abr de 2026, 9:52 am,

Apr 16

Pritam Kumar Ghosh, … Tali Mazor5

Apr 13

BCGA is not working properly

Hi Pritam, This email address is for support of cbioportal.org. It seems the issue you are describing

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BCGA is not working properly

Hi Pritam, This email address is for support of cbioportal.org. It seems the issue you are describing

Apr 13

Sergio Rutella, … Madupuri, Ramyasree7

Apr 9

St Jude 2024 data

Hi Ramya, It is working perfectly now! Many thanks again and all the best, Sergio On Wed, 8 Apr 2026

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St Jude 2024 data

Hi Ramya, It is working perfectly now! Many thanks again and all the best, Sergio On Wed, 8 Apr 2026

Apr 9

davide...@gmail.com, Nikolaus Schultz5

Apr 8

CBioPortal dataset license

Thanks for considering my suggestion :-) -- Davide Chicco On Wed, Apr 8, 2026 at 3:47 PM Nikolaus

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CBioPortal dataset license

Thanks for considering my suggestion :-) -- Davide Chicco On Wed, Apr 8, 2026 at 3:47 PM Nikolaus

Apr 8

Yuliia Orlova, Gaofei Zhao2

Apr 7

Cbio Portal with Nginx

Hi Yuliia, The issue seems related to a CORS error. Could you try these steps? Bring down docker-

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Cbio Portal with Nginx

Hi Yuliia, The issue seems related to a CORS error. Could you try these steps? Bring down docker-

Apr 7

Michelle Mølgaard Thomsen, Nikolaus Schultz2

Apr 7

Hi Michelle, Thank you for reaching out. The public cBioPortal at cbioportal.org will always show all

unread,

Hi Michelle, Thank you for reaching out. The public cBioPortal at cbioportal.org will always show all

Apr 7

Neha Talluri, Curation Team2

Apr 6

What is the data source and calling procedure for copy number data in ccle_broad_2019?

Hi, Apologies for the delayed response. We addressed this in detail on the Datahub GitHub thread (

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What is the data source and calling procedure for copy number data in ccle_broad_2019?

Hi, Apologies for the delayed response. We addressed this in detail on the Datahub GitHub thread (

Apr 6

Jill Bigler, … müge balaban6

Apr 5

cBioPortal user reported error

https://www.cbioportal.org/results/oncoprint?cancer_study_list=

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cBioPortal user reported error

https://www.cbioportal.org/results/oncoprint?cancer_study_list=

Apr 5

Soumya Joshi, Nikolaus Schultz4

Apr 1

Re: Studying Phosphorylation Levels

Thanks for the information. Do you know of any dataset or database that I can use to study LATS

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Re: Studying Phosphorylation Levels

Thanks for the information. Do you know of any dataset or database that I can use to study LATS

Apr 1

Steve Neuhauser, de Bruijn, Ino2

Apr 1

Organization of studies into groups on query / home page

HI Steve, Thanks for reaching out! This is currently managed through application configuration: https

unread,

Organization of studies into groups on query / home page

HI Steve, Thanks for reaching out! This is currently managed through application configuration: https

Apr 1

Jerome Koopman, Nikolaus Schultz2

Mar 31

Breast Cancer studies with PIK3CA mutation

Hi, You can query all breast cancer studies for PIK3CA and see the frequency of PIK3CA mutations in

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Breast Cancer studies with PIK3CA mutation

Hi, You can query all breast cancer studies for PIK3CA and see the frequency of PIK3CA mutations in

Mar 31

Ines Boga, Nikolaus Schultz2

Mar 31

Enquiry regarding survival data: Acute Myeloid Leukemia Firehose Legacy dataset

Hi Ines, This is a good question - we would not use a “0” to indicate missing data, so I would assume

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Enquiry regarding survival data: Acute Myeloid Leukemia Firehose Legacy dataset

Hi Ines, This is a good question - we would not use a “0” to indicate missing data, so I would assume

Mar 31

Ali Livernois, … Ramya Madupuri5

Mar 31

KRAS mut/WT patient ID disconnect between portal/paper

Hi Ramya, Thank you very much for this information, much appreciated. Best, Alexandra From: Ramya

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KRAS mut/WT patient ID disconnect between portal/paper

Hi Ramya, Thank you very much for this information, much appreciated. Best, Alexandra From: Ramya

Mar 31

Mar 31

GSoC 2026 Introduction – UI/UX Contributor Interested in cBioPortal

Hi everyone! I'm Surabhi Rai, currently pursuing a Master's in Microbiology, with a

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GSoC 2026 Introduction – UI/UX Contributor Interested in cBioPortal

Hi everyone! I'm Surabhi Rai, currently pursuing a Master's in Microbiology, with a

Mar 31

Abdullahi Ubale Usman

Mar 31

Dear sir, I am intending to apply for Google Summer Code 2026, and wishing to choose your

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Dear sir, I am intending to apply for Google Summer Code 2026, and wishing to choose your

Mar 31

Miu ki Yip, Benjamin Gross6

Mar 26

Private Instance Data Access Token Generation UUID

Hi Yip, I'm guessing that the value of dat.oauth2.jwtRolesPath may be incorrect. If this value is

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Private Instance Data Access Token Generation UUID

Hi Yip, I'm guessing that the value of dat.oauth2.jwtRolesPath may be incorrect. If this value is

Mar 26

Turski, Michelle, … Benjamin Gross7

Mar 25

Request for VPAT for cBioPortal

Hi Michelle, Thanks for your patience. VPAT and WCAG were discussed during our last cBioPortal Core

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Request for VPAT for cBioPortal

Hi Michelle, Thanks for your patience. VPAT and WCAG were discussed during our last cBioPortal Core

Mar 25

Andi L., Benjamin Gross3

Mar 23

MSK-CHORD overall survival

Dear Benjamin, thank you, that was the answer I was looking for. Makes sense too, within MSK-CHORD

unread,

MSK-CHORD overall survival

Dear Benjamin, thank you, that was the answer I was looking for. Makes sense too, within MSK-CHORD

Mar 23

Zain Ali Khan, Prasanna Jagannathan3

Mar 18

Re: GSoC 2026 — cBioPortal Slack Invitation Request | Zain Ali Khan

Thank you, I will do that. and i am send the request On Wed, Mar 18, 2026 at 9:24 PM Prasanna

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Re: GSoC 2026 — cBioPortal Slack Invitation Request | Zain Ali Khan

Thank you, I will do that. and i am send the request On Wed, Mar 18, 2026 at 9:24 PM Prasanna

Mar 18

Zain Ali Khan, Prasanna Jagannathan2

Mar 17

GSoC 2026: Interest in contributing to cBioPortal | Full-Stack & AI Background | Zain Ali Khan

Hi Zain, Please follow Google Summer of Code program. Once the applicants are open, then you can

unread,

GSoC 2026: Interest in contributing to cBioPortal | Full-Stack & AI Background | Zain Ali Khan

Hi Zain, Please follow Google Summer of Code program. Once the applicants are open, then you can

Mar 17

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