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cBioPortal for Cancer Genomics Discussion Group

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Alkaissi, Hussam (NIH/NIDDK) [E], … Anu Vijay14

Feb 27

TCGA-PCPG Cohort

The germline variant data has already been captured and added as a clinical attribute in the Summary

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TCGA-PCPG Cohort

The germline variant data has already been captured and added as a clinical attribute in the Summary

Feb 27

Pritam Kumar Ghosh, … bir...@icloud.com9

Feb 27

cBioPortal user reported error

{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute

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cBioPortal user reported error

{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute

Feb 27

Feb 27

Question re: cell line data

Dear cBioportal Group, I am hoping you can help reconcile some data for me. I have been trying to

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Question re: cell line data

Dear cBioportal Group, I am hoping you can help reconcile some data for me. I have been trying to

Feb 27

Enkemann, Steven, Gaofei Zhao2

Feb 26

Hi Steven, I tried querying the GENIE cohort (v19.0) for PTEN, and it looks correct on my end. Could

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Hi Steven, I tried querying the GENIE cohort (v19.0) for PTEN, and it looks correct on my end. Could

Feb 26

Miu ki Yip, Jessica Singh2

Feb 25

Studies Structural Variant Chart Title Wording

Hi Miu ki, The denominator shown in that chart is driven by the gene panel matrix file. If that file

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Studies Structural Variant Chart Title Wording

Hi Miu ki, The denominator shown in that chart is driven by the gene panel matrix file. If that file

Feb 25

elias, Tim Kuijpers3

Feb 25

Reference Genome

Dear Elias, For some reason your second question did not end up in the board (and only in my inbox).

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Reference Genome

Dear Elias, For some reason your second question did not end up in the board (and only in my inbox).

Feb 25

Leila Kamkar, ole...@thehyve.nl3

Feb 25

Study Import in cBioPortal with redis and keycloak

Hi Leila, I think I found the issue in the configuration. It looks like the port is currently being

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Study Import in cBioPortal with redis and keycloak

Hi Leila, I think I found the issue in the configuration. It looks like the port is currently being

Feb 25

Heather Costello, Jessica Singh2

Feb 25

fields populated by source data vs populated by cbp efforts

Hi Heather, Thanks for reaching out. This is a great question, especially given that you are building

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fields populated by source data vs populated by cbp efforts

Hi Heather, Thanks for reaching out. This is a great question, especially given that you are building

Feb 25

Mihir Shah, Jessica Singh2

Feb 25

Access to the CBioPortal AI-powered chat

Hi Mihir, Thanks for your message, and it's great to hear you're using cBioPortal for your

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Access to the CBioPortal AI-powered chat

Hi Mihir, Thanks for your message, and it's great to hear you're using cBioPortal for your

Feb 25

Sushma Sushma, Jessica Singh2

Feb 25

Request for Approval / Acknowledgment for Academic Use of TCGA Database in Breast Cancer Genomic Research

Hi Dr. Sushma, Thank you for your detailed message and for outlining your study so clearly. No formal

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Request for Approval / Acknowledgment for Academic Use of TCGA Database in Breast Cancer Genomic Research

Hi Dr. Sushma, Thank you for your detailed message and for outlining your study so clearly. No formal

Feb 25

Prasanth Yenduri, Tim Kuijpers2

Feb 25

Incremental Load Support for CNA DISCRETE_LONG Datatype

Dear Prasanth, The CNA_DISCRETE_LONG datatype has been added and is available to the cbioportal-core

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Incremental Load Support for CNA DISCRETE_LONG Datatype

Dear Prasanth, The CNA_DISCRETE_LONG datatype has been added and is available to the cbioportal-core

Feb 25

Franz Ketzer, … Aaron L8

Feb 20

mRNA profile not available

Hi, Thank you, it seems to be working now! Appreciate your help. Best, Franz Von: Aaron L <lisman.

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mRNA profile not available

Hi, Thank you, it seems to be working now! Appreciate your help. Best, Franz Von: Aaron L <lisman.

Feb 20

Bozhi Liu, ole...@thehyve.nl3

Feb 20

Dear Bozhi, You can access the chat in https://chat.cbioportal.org. Best regards, Oleguer Plantalech

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Dear Bozhi, You can access the chat in https://chat.cbioportal.org. Best regards, Oleguer Plantalech

Feb 20

prasanth yenduri, Tali Mazor2

Feb 18

Regarding cbio chat interface

Hi, Thanks for reaching out and apologies for the delayed response. This work is in the prototype

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Regarding cbio chat interface

Hi, Thanks for reaching out and apologies for the delayed response. This work is in the prototype

Feb 18

Mohammed Barakat, Tali Mazor3

Feb 14

Creating co-Mutation Groups

Dear Dr. Mazor, Thank you so much for your help and for the specific guidance on using the '

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Creating co-Mutation Groups

Dear Dr. Mazor, Thank you so much for your help and for the specific guidance on using the '

Feb 14

ramakrishnan krishnan, Tali Mazor3

Feb 13

The website is back up. Thanks for your patience. On Thu, Feb 12, 2026 at 5:12 PM ramakrishnan

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The website is back up. Thanks for your patience. On Thu, Feb 12, 2026 at 5:12 PM ramakrishnan

Feb 13

Claudia Huettner, Aaron L2

Feb 11

repeated error message

Thanks Claudia. Looking. On Wed, Feb 11, 2026 at 1:42 PM Claudia Huettner <claudia.huettner@

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repeated error message

Thanks Claudia. Looking. On Wed, Feb 11, 2026 at 1:42 PM Claudia Huettner <claudia.huettner@

Feb 11

QUAN LI, JJ Gao2

Feb 11

Hi Quan, Thanks so much for reaching out! Apologies for the delayed response. This work is in the

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Hi Quan, Thanks so much for reaching out! Apologies for the delayed response. This work is in the

Feb 11

Rebecca Sansale, Gaofei Zhao3

Feb 11

Cannot Initialize CBP from Docker

Hi Gaofei-- I looked into my issue more and the SQL server actually initializes fine. This problem

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Cannot Initialize CBP from Docker

Hi Gaofei-- I looked into my issue more and the SQL server actually initializes fine. This problem

Feb 11

Marks, Chris D, JJ Gao2

Feb 11

Rate limiting on API

Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the site was

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Rate limiting on API

Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the site was

Feb 11

matteo....@gmail.com, … Aaron L14

Feb 11

Error 429 when using cBioPortal API

Hello, For now we have restored access for api users at the usual address www.cbioportal.org. We

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Error 429 when using cBioPortal API

Hello, For now we have restored access for api users at the usual address www.cbioportal.org. We

Feb 11

Yin, Yue He/Him (AHN), JJ Gao2

Feb 11

cBioPortal() doesn't Work because too many requests

Hi Yue He, Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the

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cBioPortal() doesn't Work because too many requests

Hi Yue He, Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the

Feb 11

Tsuyoshi Umeda, JJ Gao2

Feb 11

CBioPortal_Chat interface access request

Thanks so much for reaching out! This work is in prototype stage, so keep expectations low 😊 (

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CBioPortal_Chat interface access request

Thanks so much for reaching out! This work is in prototype stage, so keep expectations low 😊 (

Feb 11

BARROWS, Natalie (BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST), JJ Gao2

Feb 10

Downloading datasets available within cBioPortal

Dear Natalie, Thank you for your inquiry. The Genie BPC data is available for download on Synapse:

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Downloading datasets available within cBioPortal

Dear Natalie, Thank you for your inquiry. The Genie BPC data is available for download on Synapse:

Feb 10

Amit Mukherjee, Ruslan Forostianov3

Feb 10

Question on AI GuardRails

Hey Ruslan, Apologies, did not get ur response earlier.I would expect something like, it is an

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Question on AI GuardRails

Hey Ruslan, Apologies, did not get ur response earlier.I would expect something like, it is an

Feb 10

Steven Gray, JJ Gao2

Feb 10

Error encountered in cBioPortal

Hi Steven, Thanks for reaching out. This might be a one-time glitch. Would you please try again and

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Error encountered in cBioPortal

Hi Steven, Thanks for reaching out. This might be a one-time glitch. Would you please try again and

Feb 10

Whitney Brandt, Aaron L2

Feb 6

We're looking. Thanks for the heads up Whtney. On Fri, Feb 6, 2026 at 12:06 PM Whitney Brandt

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We're looking. Thanks for the heads up Whtney. On Fri, Feb 6, 2026 at 12:06 PM Whitney Brandt

Feb 6

Samuel Kellen, … Rebecca Sansale9

Feb 5

Unable to iniitalize cBioPortal off Docker

Hi Ben-- I am running into the same issue. I have followed the instructions for Deploying CBP with

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Unable to iniitalize cBioPortal off Docker

Hi Ben-- I am running into the same issue. I have followed the instructions for Deploying CBP with

Feb 5

Michon Clemence, Gaofei Zhao3

Feb 4

Error cbioportal

Hello, Thank you for your answer. I have been experiencing delays since the beginning of the week

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Error cbioportal

Hello, Thank you for your answer. I have been experiencing delays since the beginning of the week

Feb 4

Hsiao, Yi-Wen, Nikolaus Schultz2

Feb 4

Question regarding accessing patient-level SNP and CNV data in GENIE

HI, All GENIE data is available for download via Synapse at this URL: https://genie.synapse.org/ Niki

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Question regarding accessing patient-level SNP and CNV data in GENIE

HI, All GENIE data is available for download via Synapse at this URL: https://genie.synapse.org/ Niki

Feb 4

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