cBioPortal for Cancer Genomics Discussion Group - Google Groups

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Jul 17

NA genome assembly for some genomic mutations

Dear cBioPortal and users, I am retrieving POLD1 mutations through the cBioPortal API and found a few

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NA genome assembly for some genomic mutations

Dear cBioPortal and users, I am retrieving POLD1 mutations through the cBioPortal API and found a few

Jul 17

Boer, Elena, Nikolaus Schultz4

Jul 16

Error accessing data

Hi Niki, Thank you for letting me know! Happy to hear this. Cheers, Elena Private Information From:

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Error accessing data

Hi Niki, Thank you for letting me know! Happy to hear this. Cheers, Elena Private Information From:

Jul 16

hf123q, Nikolaus Schultz3

Jul 16

来自hf123q的邮件

Hi, This issue has been resolved - thank you for your patience. It was related to a recent change in

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来自hf123q的邮件

Hi, This issue has been resolved - thank you for your patience. It was related to a recent change in

Jul 16

PUTRA, Hadi (CAMBRIDGE UNIVERSITY HOSPITALS NHS FOUNDATION TRUST), … Lautensack, Elias5

Jul 16

Errors in checking mutations on certain genes

Hi, That's nice to hear! Thanks for solving this so quickly. Best Elias. Von: Nikolaus Schultz

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Errors in checking mutations on certain genes

Hi, That's nice to hear! Thanks for solving this so quickly. Best Elias. Von: Nikolaus Schultz

Jul 16

Soto Mangandi, Stephanie, Nikolaus Schultz4

Jul 16

Data Error Message (7/15/2026)

This is wonderful news, thank you so much for your help, Niki! Best, Stephanie Stephanie Soto

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Data Error Message (7/15/2026)

This is wonderful news, thank you so much for your help, Niki! Best, Stephanie Stephanie Soto

Jul 16

Erdem KÖLEMEN, Ritika Kundra2

Jul 16

Hello Dr. Kolemen, The associated publication for this study is https://pubmed.ncbi.nlm.nih.gov/

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Hello Dr. Kolemen, The associated publication for this study is https://pubmed.ncbi.nlm.nih.gov/

Jul 16

Trevor Christ, … Nikolaus Schultz12

Jul 16

cBioPortal user reported error

Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

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cBioPortal user reported error

Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

Jul 16

Sailer, Megan R., MLS(ASCP), Nikolaus Schultz3

Jul 16

Oh no! We encountered an error.

Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

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Oh no! We encountered an error.

Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

Jul 16

Vijayanarayanan, Anjanaa, Nikolaus Schultz3

Jul 16

Error for queries

Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

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Error for queries

Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

Jul 16

Nadiia Kazachkova, Nikolaus Schultz3

Jul 16

Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

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Hi, This issue has been resolved - thank you for your patience. Please let us know if you still have

Jul 16

Gao, Jianjiong/Epidemiology-Biostatistics, … Amal Kamal Abdel-Aziz9

Jul 15

RE: Sudden difficulty loading cBioPortal

Good afternoon, I tried today again to access the cBioportal webpage from a different PC connected to

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RE: Sudden difficulty loading cBioPortal

Good afternoon, I tried today again to access the cBioportal webpage from a different PC connected to

Jul 15

Becky Steck, … JJ Gao4

Jul 7

Reloading data from cBioPortal into a new instance

Hi Becky, Please feel free to reuse the studies. Please see guidelines here: https://docs.cbioportal.

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Reloading data from cBioPortal into a new instance

Hi Becky, Please feel free to reuse the studies. Please see guidelines here: https://docs.cbioportal.

Jul 7

Lang,Emily, JJ Gao2

Jun 29

Input on cBioPortal Language for DOD RCRP LOI Specific Aims

Hi Emily, Happy to help. Would you please let us know some more details on what's in the aim

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Input on cBioPortal Language for DOD RCRP LOI Specific Aims

Hi Emily, Happy to help. Would you please let us know some more details on what's in the aim

Jun 29

Jake Reed, Ruslan Forostianov2

Jun 29

cBioPortal Public Study Question

Hi Jake, Thanks for reaching out, and thanks for being part of the cBioPortal community. Just to

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cBioPortal Public Study Question

Hi Jake, Thanks for reaching out, and thanks for being part of the cBioPortal community. Just to

Jun 29

Yu Chin Liu, Ruslan Forostianov2

Jun 29

cBioPortal user reported error

Dear Yu-Chin Liu, Thank you for reporting this and for sharing the detailed steps and error log. This

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cBioPortal user reported error

Dear Yu-Chin Liu, Thank you for reporting this and for sharing the detailed steps and error log. This

Jun 29

Maria Grazia Giuffrida, Ruslan Forostianov2

Jun 29

Hi Maria, Thank you! I've reported a ticket for you here: https://github.com/cBioPortal/

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Hi Maria, Thank you! I've reported a ticket for you here: https://github.com/cBioPortal/

Jun 29

Osvaldas Vainauskas, Ritika Kundra2

Jun 24

Dataset Submission Request – Curated Prostate Cancer Study (PEACE Cohort)

Hi Osvaldas, Thanks for contacting us and considering hosting your data with cBioPortal. I'm

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Dataset Submission Request – Curated Prostate Cancer Study (PEACE Cohort)

Hi Osvaldas, Thanks for contacting us and considering hosting your data with cBioPortal. I'm

Jun 24

Jake Reed, Ritika Kundra2

Jun 24

MSKCC cBioPortal Question

Hi Jake, Thanks for reaching out and considering hosting your data with cBioPortal. The timeline can

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MSKCC cBioPortal Question

Hi Jake, Thanks for reaching out and considering hosting your data with cBioPortal. The timeline can

Jun 24

Matteo Tiberti, Gaofei Zhao4

Jun 19

Possible change in cBioPortal API - intentional?

Hi Matteo, That's a great question. We do weekly releases, and API-related changes are typically

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Possible change in cBioPortal API - intentional?

Hi Matteo, That's a great question. We do weekly releases, and API-related changes are typically

Jun 19

Guo, Robin, Gaofei Zhao5

Jun 18

re: Submitting Public Dataset for Publication

Hi Robin, Got it. I have already contacted our curation team, and they should reach out to you

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re: Submitting Public Dataset for Publication

Hi Robin, Got it. I have already contacted our curation team, and they should reach out to you

Jun 18

Fletcher, Sean, Ramya Madupuri3

Jun 12

Abstract review submission link not working

Hi Sean, Thank you for the clarification. For issues related to the abstract submission, please

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Abstract review submission link not working

Hi Sean, Thank you for the clarification. For issues related to the abstract submission, please

Jun 12

HoJoon Lee, Ramya Madupuri3

Jun 11

Match CPTAC-COAD sample ID with TCGA-COAD sample ID

Hi Ramya, Thank you for your clarification! Best, HoJoon HoJoon Lee, Ph.D. Med/Oncology, Stanford

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Match CPTAC-COAD sample ID with TCGA-COAD sample ID

Hi Ramya, Thank you for your clarification! Best, HoJoon HoJoon Lee, Ph.D. Med/Oncology, Stanford

Jun 11

Laura Parrilla Monge, Baby Anusha Satravada2

Jun 11

Inconsistencies between studies

Hi Laura, Thank you for your question. The discrepancy is primarily due to differences in the copy

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Inconsistencies between studies

Hi Laura, Thank you for your question. The discrepancy is primarily due to differences in the copy

Jun 11

Laura Parrilla Monge, Tali Mazor3

Jun 10

inconsistencies between cohorts

Hi Laura, All pipelines have their pros and cons. If you are more comfortable with ASCAT, you can

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inconsistencies between cohorts

Hi Laura, All pipelines have their pros and cons. If you are more comfortable with ASCAT, you can

Jun 10

Mark Paris, JJ Gao4

Jun 5

survival analysis

You're welcome. Glad that it was helpful. On Fri, Jun 5, 2026 at 12:50 PM Mark Paris <parismj@

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survival analysis

You're welcome. Glad that it was helpful. On Fri, Jun 5, 2026 at 12:50 PM Mark Paris <parismj@

Jun 5

Lewis Schendowich, Tali Mazor2

Jun 5

cbioportal question

Hi Lewis, You can find information about cBioPortal in our documentation (https://docs.cbioportal.org

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cbioportal question

Hi Lewis, You can find information about cBioPortal in our documentation (https://docs.cbioportal.org

Jun 5

Vijayaraghavan, Shoba

Jun 5

RE: AACR Project GENIE Coordinating Center - Data Access Request

Hi, Thanks- let us set up a call on Tuesday. We would like to be able to access the database using an

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RE: AACR Project GENIE Coordinating Center - Data Access Request

Hi, Thanks- let us set up a call on Tuesday. We would like to be able to access the database using an

Jun 5

Deeya Khamesra, JJ Gao2

Jun 4

Hi Deeya, Thanks for reporting this to us. The issue was cause by the fact that this study does not

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Hi Deeya, Thanks for reporting this to us. The issue was cause by the fact that this study does not

Jun 4

Michael Lisby, JJ Gao2

Jun 4

Help for cBioPortal

Hi Michael, Sorry for the late reply. HRD data is sparse in cBioPortal. One option is to look at

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Help for cBioPortal

Hi Michael, Sorry for the late reply. HRD data is sparse in cBioPortal. One option is to look at

Jun 4

Jason White, Ramya Madupuri2

Jun 4

Access to mutation data

Hi Jason, There are two ways to access the data. The instructions are available in the Datahub Readme

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Access to mutation data

Hi Jason, There are two ways to access the data. The instructions are available in the Datahub Readme

Jun 4

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