Bonsai Users

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Welcome to bonsai-users, a general discussion list for the Bonsai programming language.

We are moving from this group to GitHub discussions: Discussions · bonsai-rx/bonsai (github.com)

For more information, visit the Bonsai website at: http://bonsai-rx.org

Please file issues and bugs at: https://github.com/bonsai-rx/bonsai/issues

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goncaloclopes

Apr 30

This group is now archived

Hi everyone, This will be the last message to this mailing list. It has served us well for many years

unread,

This group is now archived

Hi everyone, This will be the last message to this mailing list. It has served us well for many years

Apr 30

Charlie Rosher

Mar 26

Engaging all CPU cores in Bonsai.sleap

Hi, I have a new computer with AMD Ryzen 9 7950X 16-Core Processor, and I am running a Bonsai SLEAP

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Engaging all CPU cores in Bonsai.sleap

Hi, I have a new computer with AMD Ryzen 9 7950X 16-Core Processor, and I am running a Bonsai SLEAP

Mar 26

bastijnv...@gmail.com

Mar 7

GPIO input of Daheng Imaging cameras

Hi all, We've recently started to work with Daheng Imaging cameras (specifically, MER2_160_227U3M

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GPIO input of Daheng Imaging cameras

Hi all, We've recently started to work with Daheng Imaging cameras (specifically, MER2_160_227U3M

Mar 7

Andrew Kesner

12/15/23

writting smaller sized videos

I am capturing video with a USB camera and taking a sample every 50ms and using video writer set to

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writting smaller sized videos

I am capturing video with a USB camera and taking a sample every 50ms and using video writer set to

12/15/23

Spark Zhu, … kapil...@gmail.com73

12/5/23

Q&A

Problem using SpinnakerCapture

Cant control the FPS of video captured in rFLIR cam, is there a way, The video write node is set to

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Q&A

Problem using SpinnakerCapture

Cant control the FPS of video captured in rFLIR cam, is there a way, The video write node is set to

12/5/23

Naman Agrawal, … kapil...@gmail.com6

12/5/23

Output videos of variable length

Can this be done in the Spinnker Capture node as well, i am getting 66 FPS in Flir camera and cant

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Output videos of variable length

Can this be done in the Spinnker Capture node as well, i am getting 66 FPS in Flir camera and cant

12/5/23

稲垣友嶺, Chi-Yu Lee2

11/2/23

I would like to exchange data between Bonsai and Unity.

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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I would like to exchange data between Bonsai and Unity.

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

11/2/23

Albit Caban, brunocruz2

6/29/23

Having Bonsai communicate with arduino to send TTL

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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Having Bonsai communicate with arduino to send TTL

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

6/29/23

Philip Parker, … Chi-Yu Lee3

6/27/23

Writing metadata to csv files

Hi, in case you still want to write meta data in, have a look at the workflow I post on the Github

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Writing metadata to csv files

Hi, in case you still want to write meta data in, have a look at the workflow I post on the Github

6/27/23

Estelle in 't Zandt, ale....@gmail.com2

6/19/23

Spinnaker version 1.29.0.5 download

Hi Estelle Go to this link https://www.flir.com/products/spinnaker-sdk/?vertical=machine+

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Spinnaker version 1.29.0.5 download

Hi Estelle Go to this link https://www.flir.com/products/spinnaker-sdk/?vertical=machine+

6/19/23

Sigma

5/16/23

my wechat：Sigma0089

I am a user of Bonsai, and I really want to communicate with you on wechat! We can make propgress

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my wechat：Sigma0089

I am a user of Bonsai, and I really want to communicate with you on wechat! We can make propgress

5/16/23

Laura Angeja, brunocruz2

5/6/23

Movie file Stops reading

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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Movie file Stops reading

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

5/6/23

CRISTIAN MORALES ROJAS, Tomás Manuel Chialina3

4/30/23

shader window location

thanks for your help it was very useful El sábado, 22 de abril de 2023 a las 11:44:19 UTC-4, tman...@

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shader window location

thanks for your help it was very useful El sábado, 22 de abril de 2023 a las 11:44:19 UTC-4, tman...@

4/30/23

Chinmay Purandare, brunocruz2

3/1/23

Acquiring Neuropixel probes data in Bonsai

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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Acquiring Neuropixel probes data in Bonsai

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

3/1/23

Nikolas Karalis, brunocruz2

3/1/23

Miniscope multi-plane imaging

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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Miniscope multi-plane imaging

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

3/1/23

Tim Sainburg, brunocruz2

3/1/23

Best way to communicate between bonsai and external python script

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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Best way to communicate between bonsai and external python script

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

3/1/23

Adrian Duszkiewicz, brunocruz2

3/1/23

VideoWriter not saving videos from PylonCapture

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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VideoWriter not saving videos from PylonCapture

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

3/1/23

Michael Graupner, brunocruz3

3/1/23

Bonsai.TeledyneDALSA not delivering images

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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Bonsai.TeledyneDALSA not delivering images

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

3/1/23

patricio simoes, brunocruz2

3/1/23

How best video write in a trial-based experiment?

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

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How best video write in a trial-based experiment?

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

3/1/23

Manal Mansour, brunocruz2

3/1/23

Camera connection

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

unread,

Camera connection

Hi! We are making a push to move all discussions and Q&A to GitHub. As a result, I would invite

3/1/23

Philip Parker, brunocruz2

1/31/23

Allied vision camera not working with VimbaCapture

As this is a community package, I would encourage you to post an issue in the respective GitHub repo

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Allied vision camera not working with VimbaCapture

As this is a community package, I would encourage you to post an issue in the respective GitHub repo

1/31/23

Eirinn Mackay, … Chi-Yu Lee7

1/19/23

Q&A

Anyone got experience using Basler with or without Directshow?

just a note that there is a new pylon library available on Bonsai using 7.1.0 pylon runtime so you

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Q&A

Anyone got experience using Basler with or without Directshow?

just a note that there is a new pylon library available on Bonsai using 7.1.0 pylon runtime so you

1/19/23

kapil...@gmail.com, João Frazão2

12/18/22

Using Open AI to write a code of BONSAI use

ahahaha, Seems to get the steps in the right order. On Sat, Dec 17, 2022 at 3:09 PM kapil...@gmail.

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Using Open AI to write a code of BONSAI use

ahahaha, Seems to get the steps in the right order. On Sat, Dec 17, 2022 at 3:09 PM kapil...@gmail.

12/18/22

Sigma, kapil...@gmail.com2

12/13/22

Set the time of the shock process

Hi, its been answered here https://groups.google.com/g/bonsai-users/c/TwLdBqzacvI/m/KDP7yhgKAQAJ in

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Set the time of the shock process

Hi, its been answered here https://groups.google.com/g/bonsai-users/c/TwLdBqzacvI/m/KDP7yhgKAQAJ in

12/13/22

ncguil...@gmail.com, 3967...@qq.com2

12/7/22

BonZeb

Hi Nick, I am trying to use the Bonzeb to track multiple fruit flies, but I cannot get it to work

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BonZeb

Hi Nick, I am trying to use the Bonzeb to track multiple fruit flies, but I cannot get it to work

12/7/22

Gonçalo Lopes, … kapil...@gmail.com3

11/30/22

Re: [bonsai-users] Finding Net Time Spent in ROI automatically

share the link man? On Thursday, February 11, 2021 at 9:22:05 AM UTC-6 Ryan R. Avenido wrote: Hi

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Re: [bonsai-users] Finding Net Time Spent in ROI automatically

share the link man? On Thursday, February 11, 2021 at 9:22:05 AM UTC-6 Ryan R. Avenido wrote: Hi

11/30/22

Chris Gabriel, … Sigma3

11/25/22

Q&A

Bonsai + Arduino for Controlling Fear Conditioning Shock Grid

Hello, i met the same problem. Could you please show more detailed workflow to me? Thank you so much!

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Q&A

Bonsai + Arduino for Controlling Fear Conditioning Shock Grid

Hello, i met the same problem. Could you please show more detailed workflow to me? Thank you so much!

11/25/22

Marcelo J. Moglie, eabho...@gmail.com4

11/24/22

Gamma Correction

Hi Marcelo, The issue was in the location of the GammaCorrection node. Since it was inside the trial

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Gamma Correction

Hi Marcelo, The issue was in the location of the GammaCorrection node. Since it was inside the trial

11/24/22

王福海

11/13/22

Vedio record for a certain time long

Hello，I'm a new Bonsai user and i want to record a video for a certain length such as 1 or 5

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Vedio record for a certain time long

Hello，I'm a new Bonsai user and i want to record a video for a certain length such as 1 or 5

11/13/22

Pedro Coelho

11/10/22

Bonsai Extensions Error

Hello, Sorry for the more basic technical question, but since I changed Bonsai's installation

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Bonsai Extensions Error

Hello, Sorry for the more basic technical question, but since I changed Bonsai's installation

11/10/22