bamtools-user

Hello, I am using BamTools in the pairedBamToBed12 program (https://github.com/Population-

I have recently started to develop a C++ program to process BAM files. I just configured Bamools on

You can look at how I do it here: https://github.com/adarob/eXpress/blob/master/src/mapparser.cpp

Hi, I have an Xcode project that uses bamtools libraries but I am failing to link the libraries and

Are there any updates on a BamTools version 3.0. I could really use this pileup in the API. Thanks,

Hi Chen, The error message indicates that g++ isn't finding the bamtools library. Make sure the

Hi Derek, thank you for your answer. Maybe it would be useful to add some information to the

Hi Philipp, Not quite sure what's going on here without more info, but errors in opening files

Hi Derek, I tried the pointer approach in my program and it works exactly as what I wish. Thank you

Thanks so much, Jared! I'll look into that! Wyatt On Thu, Dec 12, 2013 at 4:55 PM, js18 <js18@

Hi KM, I haven't been able to reproduce your problem from here, so I can only toss out ideas.

Can you try to use the BamTools API indexing function instead of "samtools index".

Hello list, sorry for answering my question myself after such a short time: It works by using "

I assume by providing a link to pySam, you're interested in the API more so than the command line

* CRITICAL * There was a coordinate discrepancy with older BamTools versions. Please see the Porting