#!/bin/bash
#PBS -V
#PBS -N abyss_1
#PBS -q batch
#PBS -S /bin/bash
#PBS -m abe
#PBS -e /home/ngutierrez/nas4/abyss/trimgalore_output/abyss_27.e
#PBS -o /home/ngutierrez/nas4/abyss/trimgalore_output/abyss_27.o
#PBS -l ncpus=40
#PBS -l walltime=100:00:00
#PBS -l mem=250G

module load abyss-2.0.2
cd /home/ngutierrez/nas4/abyss/trimgalore_output/

abyss-pe name=Tdiscoideus2 k=27 in='/home/ngutierrez/nas4/abyss/trimgalore_output/Tdiscoideus2_R1_001.trimmed.fastq.gz /home/ngutierrez/nas4/abyss/trimgalore_output/Tdiscoideus2_R2_001.trimmed.fastq.gz'



