Newbie help

[Kenneth Borthwick]

I'm trying to get YTEX running using the YTEXMetamapPipeline. I installed MetaMap, followed by the MetaMap java api and MetaMap UIMA. I tested the MetaMap server and the java api according to the instructions on the MetaMap site and I got the expected results. I installed YTEX according to the instructions that I found on the Wiki. I'm able to run pipelines in the various UIMA tools and get back results. When I run the YTEXTPipeline in cvd, I see standard cTAKES annotations like MeasurementAnnotation and DateAnnotation, but it isn't doing any UMLS lookups that I can see. I have the UMLS loaded in MySQL, and I have the YTEX.profile edited and source. When I switch to using the YTEXMetamapPipeline, I see a bunch of org.metamap.uima.ts.Phrase objects, but no CUI objects. I know there is something obvious that I'm missing. Could someone help me out?

Thanks,

Ken