Unfortunately, there's no way suppress the output completely in the console. When you run yacas on a script, there's no output unless it's explicitly requested by eg. Echo(). But in the console the result of the previous operation is always being displayed. If you want to suppress a lengthy output, like eg. the result of calculating 9^9^9, the suggested workaround is to calculate
[Time(9^9^9); True;]
This way the returned result is the one of the last expressions in the sequence, which is just True, and you get the timing as a side effect of the Time() function.
HTH,
Grzesiek