XNAT Desktop Client v3.0.0

[Netzahualcoyotl Hernandez-Cruz]

I everyone, I am testing the new v3.0.0 on OSX. Below is the error when attempting to annoanamise a scan. Any suggestion on how workaround this? I have downloaded the version from: https://www.bitbucket.org/xnatdev/xnat-desktop-client/downloads/XNAT-Desktop-Client-3.0.0.dmg

The error log is: 

Could not call remote function ''. Check that the function signature is correct. Underlying error: Error running instance method org.nrg.dicom.mizer.exceptions.MizerException: org.nrg.transaction.TransactionException: org.nrg.dicom.mizer.exceptions.ScriptEvaluationRuntimeException: Error evaluating alterPixels at org.nrg.dicom.mizer.service.impl.BaseMizerService.anonymize(BaseMizerService.java:267) at org.nrg.dicom.mizer.service.impl.BaseMizerService.anonymize(BaseMizerService.java:238) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) Caused by: org.nrg.transaction.TransactionException: org.nrg.dicom.mizer.exceptions.ScriptEvaluationRuntimeException: Error evaluating alterPixels at org.nrg.transaction.operations.WorkOnCopyOp.run(WorkOnCopyOp.java:50) at org.nrg.transaction.Run.runTransaction(Run.java:17) at org.nrg.dicom.mizer.service.impl.BaseMizerService.anonymize(BaseMizerService.java:265) ... 5 more Caused by: org.nrg.dicom.mizer.exceptions.ScriptEvaluationRuntimeException: Error evaluating alterPixels at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitMethod(DicomEditParseTreeVisitor.java:342) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitMethod(DicomEditParseTreeVisitor.java:39) at org.nrg.dicom.dicomedit.DE6Parser$MethodContext.accept(DE6Parser.java:1092) at org.antlr.v4.runtime.tree.AbstractParseTreeVisitor.visit(AbstractParseTreeVisitor.java:18) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitStatement(DicomEditParseTreeVisitor.java:81) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitStatement(DicomEditParseTreeVisitor.java:39) at org.nrg.dicom.dicomedit.DE6Parser$StatementContext.accept(DE6Parser.java:342) at org.antlr.v4.runtime.tree.AbstractParseTreeVisitor.visit(AbstractParseTreeVisitor.java:18) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitScript(DicomEditParseTreeVisitor.java:74) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitScript(DicomEditParseTreeVisitor.java:39) at org.nrg.dicom.dicomedit.DE6Parser$ScriptContext.accept(DE6Parser.java:140) at org.antlr.v4.runtime.tree.AbstractParseTreeVisitor.visit(AbstractParseTreeVisitor.java:18) at org.nrg.dicom.dicomedit.ScriptApplicator.apply(ScriptApplicator.java:104) at org.nrg.dicom.dicomedit.mizer.DE6Mizer.anonymizeImpl(DE6Mizer.java:105) at org.nrg.dicom.mizer.service.impl.AbstractMizer.anonymize(AbstractMizer.java:86) at org.nrg.dicom.mizer.service.impl.AnonymizeCallOnFileWithPixels.call(AnonymizeCallOnFileWithPixels.java:62) at org.nrg.dicom.mizer.service.impl.AnonymizeCallOnFileWithPixels.call(AnonymizeCallOnFileWithPixels.java:38) at org.nrg.transaction.operations.WorkOnCopyOp.run(WorkOnCopyOp.java:32) ... 7 more Caused by: org.nrg.dicom.mizer.exceptions.ScriptEvaluationException: Error in alterPixels function. shape = rectangle, shapeProperties = l=6, t=5, r=558, b=71, algorithm = solid, algorithmProperties = v=100 at org.nrg.dicom.dicomedit.functions.AlterPixelsFunction.apply(AlterPixelsFunction.java:42) at org.nrg.dicom.dicomedit.functions.FunctionManager.execute(FunctionManager.java:125) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.evaluateFunction(DicomEditParseTreeVisitor.java:440) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitMethod(DicomEditParseTreeVisitor.java:335) ... 24 more Caused by: org.nrg.dicom.mizer.exceptions.MizerException: Error editing rectangular pixel region. at org.nrg.dicom.pixeledit.impl.PixelmedPixelEditHandler.process(PixelmedPixelEditHandler.java:53) at org.nrg.dicom.pixeledit.impl.SimpleRectanglePixelEditHandler.apply(SimpleRectanglePixelEditHandler.java:45) at org.nrg.dicom.dicomedit.pixels.PixelEditorManager.apply(PixelEditorManager.java:79) at org.nrg.dicom.dicomedit.functions.AlterPixelsFunction.apply(AlterPixelsFunction.java:37) ... 27 more Caused by: java.lang.NegativeArraySizeException at org.dcm4che2.io.DicomInputStream.readBytes(DicomInputStream.java:657) at org.dcm4che2.io.DicomInputStream.readValue(DicomInputStream.java:590) at org.dcm4che2.io.DicomInputStream.parse(DicomInputStream.java:518) at org.dcm4che2.io.DicomInputStream.readDicomObject(DicomInputStream.java:415) at org.dcm4che2.io.DicomInputStream.readDicomObject(DicomInputStream.java:423) at org.nrg.dicom.mizer.objects.DicomObjectFactory$MizerDicomObject.read(DicomObjectFactory.java:487) at org.nrg.dicom.pixeledit.impl.PixelmedPixelEditHandler.update(PixelmedPixelEditHandler.java:91) at org.nrg.dicom.pixeledit.impl.PixelmedPixelEditHandler.process(PixelmedPixelEditHandler.java:46) ... 30 more Error: Could not call remote function ''. Check that the function signature is correct. Underlying error: Error running instance method org.nrg.dicom.mizer.exceptions.MizerException: org.nrg.transaction.TransactionException: org.nrg.dicom.mizer.exceptions.ScriptEvaluationRuntimeException: Error evaluating alterPixels at org.nrg.dicom.mizer.service.impl.BaseMizerService.anonymize(BaseMizerService.java:267) at org.nrg.dicom.mizer.service.impl.BaseMizerService.anonymize(BaseMizerService.java:238) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) Caused by: org.nrg.transaction.TransactionException: org.nrg.dicom.mizer.exceptions.ScriptEvaluationRuntimeException: Error evaluating alterPixels at org.nrg.transaction.operations.WorkOnCopyOp.run(WorkOnCopyOp.java:50) at org.nrg.transaction.Run.runTransaction(Run.java:17) at org.nrg.dicom.mizer.service.impl.BaseMizerService.anonymize(BaseMizerService.java:265) ... 5 more Caused by: org.nrg.dicom.mizer.exceptions.ScriptEvaluationRuntimeException: Error evaluating alterPixels at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitMethod(DicomEditParseTreeVisitor.java:342) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitMethod(DicomEditParseTreeVisitor.java:39) at org.nrg.dicom.dicomedit.DE6Parser$MethodContext.accept(DE6Parser.java:1092) at org.antlr.v4.runtime.tree.AbstractParseTreeVisitor.visit(AbstractParseTreeVisitor.java:18) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitStatement(DicomEditParseTreeVisitor.java:81) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitStatement(DicomEditParseTreeVisitor.java:39) at org.nrg.dicom.dicomedit.DE6Parser$StatementContext.accept(DE6Parser.java:342) at org.antlr.v4.runtime.tree.AbstractParseTreeVisitor.visit(AbstractParseTreeVisitor.java:18) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitScript(DicomEditParseTreeVisitor.java:74) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitScript(DicomEditParseTreeVisitor.java:39) at org.nrg.dicom.dicomedit.DE6Parser$ScriptContext.accept(DE6Parser.java:140) at org.antlr.v4.runtime.tree.AbstractParseTreeVisitor.visit(AbstractParseTreeVisitor.java:18) at org.nrg.dicom.dicomedit.ScriptApplicator.apply(ScriptApplicator.java:104) at org.nrg.dicom.dicomedit.mizer.DE6Mizer.anonymizeImpl(DE6Mizer.java:105) at org.nrg.dicom.mizer.service.impl.AbstractMizer.anonymize(AbstractMizer.java:86) at org.nrg.dicom.mizer.service.impl.AnonymizeCallOnFileWithPixels.call(AnonymizeCallOnFileWithPixels.java:62) at org.nrg.dicom.mizer.service.impl.AnonymizeCallOnFileWithPixels.call(AnonymizeCallOnFileWithPixels.java:38) at org.nrg.transaction.operations.WorkOnCopyOp.run(WorkOnCopyOp.java:32) ... 7 more Caused by: org.nrg.dicom.mizer.exceptions.ScriptEvaluationException: Error in alterPixels function. shape = rectangle, shapeProperties = l=6, t=5, r=558, b=71, algorithm = solid, algorithmProperties = v=100 at org.nrg.dicom.dicomedit.functions.AlterPixelsFunction.apply(AlterPixelsFunction.java:42) at org.nrg.dicom.dicomedit.functions.FunctionManager.execute(FunctionManager.java:125) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.evaluateFunction(DicomEditParseTreeVisitor.java:440) at org.nrg.dicom.dicomedit.DicomEditParseTreeVisitor.visitMethod(DicomEditParseTreeVisitor.java:335) ... 24 more Caused by: org.nrg.dicom.mizer.exceptions.MizerException: Error editing rectangular pixel region. at org.nrg.dicom.pixeledit.impl.PixelmedPixelEditHandler.process(PixelmedPixelEditHandler.java:53) at org.nrg.dicom.pixeledit.impl.SimpleRectanglePixelEditHandler.apply(SimpleRectanglePixelEditHandler.java:45) at org.nrg.dicom.dicomedit.pixels.PixelEditorManager.apply(PixelEditorManager.java:79) at org.nrg.dicom.dicomedit.functions.AlterPixelsFunction.apply(AlterPixelsFunction.java:37) ... 27 more Caused by: java.lang.NegativeArraySizeException at org.dcm4che2.io.DicomInputStream.readBytes(DicomInputStream.java:657) at org.dcm4che2.io.DicomInputStream.readValue(DicomInputStream.java:590) at org.dcm4che2.io.DicomInputStream.parse(DicomInputStream.java:518) at org.dcm4che2.io.DicomInputStream.readDicomObject(DicomInputStream.java:415) at org.dcm4che2.io.DicomInputStream.readDicomObject(DicomInputStream.java:423) at org.nrg.dicom.mizer.objects.DicomObjectFactory$MizerDicomObject.read(DicomObjectFactory.java:487) at org.nrg.dicom.pixeledit.impl.PixelmedPixelEditHandler.update(PixelmedPixelEditHandler.java:91) at org.nrg.dicom.pixeledit.impl.PixelmedPixelEditHandler.process(PixelmedPixelEditHandler.java:46) ... 30 more at callFunction (/Applications/XNAT-Desktop-Client.app/Contents/Resources/electron.asar/browser/rpc-server.js:259:11) at EventEmitter.(/Applications/XNAT-Desktop-Client.app/Contents/Resources/electron.asar/browser/rpc-server.js:370:5) at EventEmitter.emit (events.js:182:13) at WebContents. (/Applications/XNAT-Desktop-Client.app/Contents/Resources/electron.asar/browser/api/web-contents.js:294:13) at WebContents.emit (events.js:182:13)

[Will Horton]

Hi there, just a couple of questions to clarify. 

Are you attempting to use the pixel anonymization? Or is this the reaction to an anonymization script that you have defined in your XNAT? 

Also, what version of XNAT are you uploading to? 

Regards,

Will 

[Netzahualcoyotl Hernandez-Cruz]

Dear Will, thank you for the time taken to reply to this email. 

The error popped up during the attempt of anonymising a sonogram using the XNAT Desktop Client app. The anonymisation feature worked fine for one DICOM file but didn't work for the other 6 DICOM files I tested it with. 

Observations: 

The client version is 3.0.0. Running on macOS v12.5.1

The server's version is version 1.8.4, build: 6

There is no error when I upload the files without the pixel anonymisation feature.

Below, I provide a screenshot of the error message:

Any help will be appreciated.

Best regards,

Netza

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[Will Horton]

Thanks Netza, this is helpful. We will attempt to reproduce with local sonogram data. 

Regards,

Will