XNAT support pathology

[Naveena Gorre]

Hello all,

I have a really quick question on XNAT support for pathology data/images. From the information available on the website XNAT is supporting DICOM data but there are no clues suggesting the usage of pathology images. Please let me know any updates on this interpretation.

Thanks in advance

Naveena 

[Daniel Marcus]

For the most part, pathology would be treated as any other imaging modality. As long as the patient information is the same as your other imaging modalities, it should link up pretty well under the same patient.  The viewer probably won't work very well, though I think our friends at ICR are busy working on solutions around that. 

Is there something particular you're wanting to accomplish?  Have you tried uploading any of the path data yet?

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[Simon Doran]

Hi Dan and Naveena,

  This recent thread is probably relevant here https://groups.google.com/g/xnat_discussion/c/mvFyD4T3djE

  Out of the box, I don't think XNAT 1.8 yet supports upload of pathology DICOM types SM and GM. However, as you can see progress is certainly being made and it should soon be possible to create sessions containing these data. As Dan says, we are working hard to allow the OHIF viewer to display these.

  Best wishes,

Simon

[Daniel Marcus]

Thanks Simon. FYI, we plan to include SM and GM data types in an early April release.

-D

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[Naveena Gorre]

Hello Daniel and simon,

Thank you for all the information. I haven't tried uploading any dataset yet because the dataset I need is very large and I'm currently working on getting the required storage space but in the meanwhile I just wanted to make sure XNAT supports pathology. The updates will be definitely helpful if it could support diverse datasets.

Thanks again

Naveena Gorre

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