User tomcat6 launched tomcat and XnatPipeLauncher has been created by
root but it also has other user permissions......any other
suggestions? Should I change root owner of XnatPipieLauncher to
tomcat6? How do I do that?
Thanks,
Rodrigo
XnatPipelineLauncher:
rperea@kus-imaging:~$ ls -l /usr/local/xnat/pipeline/bin/
total 28
-rwxrwxrwx 1 root root 14 2011-06-22 10:53 GenericCommand.sh
-rwxrwxrwx 1 root root 2083 2011-06-22 10:53 PipelineJobSubmitter
-rwxrwxrwx 1 root root 1843 2011-06-22 10:53 PipelineRunner
-rwxrwxrwx 1 root root 1489 2011-06-22 10:53 PlexiConverter
-rwxrwxrwx 1 root root 1391 2011-06-22 10:53 ResourceImporter
-rwxrwxrwx 1 root root 14 2011-06-22 10:53 schedule
-rwxrwxrwx 1 root root 2723 2011-06-22 10:53 XnatPipelineLauncher
Tomcat6:
rperea@kus-imaging:~$ ps aux | grep tomcat
rperea 13118 0.0 0.0 13124 1068 pts/0 S+ 12:09 0:00 grep
--color=auto tomcat
tomcat6 32098 0.1 13.2 838388 519376 ? Sl Jun22 2:21 /usr/
lib/jvm/java-6-sun/bin/java -Djava.util.logging.config.file=/var/lib/
tomcat6/conf/logging.properties -Djava.awt.headless=true -Xmx128m -XX:
+UseConcMarkSweepGC -
Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -
Djava.endorsed.dirs=/usr/share/tomcat6/endorsed -classpath /usr/share/
tomcat6/bin/bootstrap.jar -Dcatalina.base=/var/lib/tomcat6 -
Dcatalina.home=/usr/share/tomcat6 -Djava.io.tmpdir=/tmp/tomcat6-tmp
org.apache.catalina.startup.Bootstrap start
On Jun 22, 10:10 pm, Mohana Ramaratnam <
mohanakann...@gmail.com>
wrote:
> Hi,
>
> Could you check file execute permissions wrt to the user who launches
> tomcat and pipeline/bin/XnatPipelineLauncher.
>
> Regards,
> Mohana
>
>
>
>
>
>
>
> On Thu, Jun 23, 2011 at 1:36 AM, Rodrigo Perea <
grandr...@gmail.com> wrote:
> > (by the thanks for all your support, it makes my life much simpler
> > with all the posted),,,,,
> > I am trying to understand how pipelines work and when I follow the
> > steps onhttps://
nrg.wikispaces.com/Integrating+Pipeline+Engine+and+XNAT?f=print
> > and after invoking the pipeline (Step 7), I got a Failed status in the
> > MRI Session with 50.0 as a note.
>
> > Again...looking into the application logs:
> > 011-06-22 14:58:10,302 [Thread-64] ERROR
> > org.nrg.pipeline.ProcessLauncher - Couldnt launch /usr/local/xnat/
> > pipeline/bin/XnatPipelineLauncher -pipeline xnat_tools/AutoRun.xml -id
> > xnat15_E00008 -label SampleID2 -hosthttp://localhost:8080/xnat-
> > supressNotification -u admin -dataType xnat:mrSessionData -project
> > "Pip_proAbr" -notify
administra...@xnat.org -notify
rpe...@ku.edu -
> > parameter xnat_project='Pip_proAbr' -parameter
> > userfullname='A.Admin' -parameter supressEmail='false' -parameter
> > useremail='
administra...@xnat.org' -parameter