Java.Errors when Launching in Dockerized Container

Nora K

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Jan 26, 2023, 3:07:08 AM1/26/23

to xnat_discussion

I tried to launch the Dockerized Version of XNAT. But I get the following JavaError:

_______________
./gradlew fullStackComposeBuild fullStackComposeUp
Downloading https://services.gradle.org/distributions/gradle-7.6-all.zip

Exception in thread "main" java.io.IOException: Downloading from https://services.gradle.org/distributions/gradle-7.6-all.zip failed: timeout (10000ms)
at org.gradle.wrapper.Download.downloadInternal(Download.java:131)
at org.gradle.wrapper.Download.download(Download.java:89)
at org.gradle.wrapper.Install$1.call(Install.java:83)
at org.gradle.wrapper.Install$1.call(Install.java:63)
at org.gradle.wrapper.ExclusiveFileAccessManager.access(ExclusiveFileAccessManager.java:69)
at org.gradle.wrapper.Install.createDist(Install.java:63)
at org.gradle.wrapper.WrapperExecutor.execute(WrapperExecutor.java:109)
at org.gradle.wrapper.GradleWrapperMain.main(GradleWrapperMain.java:66)
Caused by: java.net.SocketTimeoutException: connect timed out
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:476)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:218)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:200)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:394)
at java.net.Socket.connect(Socket.java:606)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:303)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:499)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:594)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:263)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:366)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:207)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1167)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1061)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:193)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1584)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1512)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:268)
at org.gradle.wrapper.Download.downloadInternal(Download.java:109)
... 7 more
___________________

I tried to increase the timeout time in gradle-wrapper.properties which then caused this:

___________________
sudo ./gradlew fullStackComposeBuild fullStackComposeUp
Downloading https://services.gradle.org/distributions/gradle-7.6-all.zip

Exception in thread "main" java.net.ConnectException: Connection timed out (Connection timed out)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:476)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:218)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:200)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:394)
at java.net.Socket.connect(Socket.java:606)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:303)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:499)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:594)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:263)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:366)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:207)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1167)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1061)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:193)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1584)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1512)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:268)
at org.gradle.wrapper.Download.downloadInternal(Download.java:109)
at org.gradle.wrapper.Download.download(Download.java:89)
at org.gradle.wrapper.Install$1.call(Install.java:83)
at org.gradle.wrapper.Install$1.call(Install.java:63)
at org.gradle.wrapper.ExclusiveFileAccessManager.access(ExclusiveFileAccessManager.java:69)
at org.gradle.wrapper.Install.createDist(Install.java:63)
at org.gradle.wrapper.WrapperExecutor.execute(WrapperExecutor.java:109)
at org.gradle.wrapper.GradleWrapperMain.main(GradleWrapperMain.java:66)
_________________

So I thought it might be an issue with the Internet, even though I can download the .zip manually, which I then did and saved it in xnat-docker-compose/gradle/wrapper and adjusted my distributionURL in the gradle-wrapper.properties file but then the following error came up:
_________________
Exception in thread "main" java.lang.RuntimeException: Gradle distribution 'file:/home/kuechno/xnat-docker-compose/gradle/wrapper/gradle-7.2-all.zip' does not appear to contain a Gradle distribution.
at org.gradle.wrapper.Install$1.call(Install.java:95)
at org.gradle.wrapper.Install$1.call(Install.java:48)
at org.gradle.wrapper.ExclusiveFileAccessManager.access(ExclusiveFileAccessManager.java:69)
at org.gradle.wrapper.Install.createDist(Install.java:48)
at org.gradle.wrapper.WrapperExecutor.execute(WrapperExecutor.java:107)
at org.gradle.wrapper.GradleWrapperMain.main(GradleWrapperMain.java:63)

______________________

Im kind of lost since I can't figure out what the problem is. When installing docker-compose I changed the default network brigde IP, since it was blocking a VM. May this cause the whole java-trouble and if so, what can I do to fix it (besides changing the IP address back to default)

Very thankful for any hints!

Rick Herrick

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Jan 26, 2023, 3:14:23 PM1/26/23

to xnat_di...@googlegroups.com

A couple things: I’m not sure why the wrapper download is failing but I do notice that there’s a mismatch in the versions going on. The failure comes when downloading gradle-7.6-all.zip, but your last error refers to gradle-7.2-all.zip. Maybe you downloaded gradle-7.6-all.zip but accidentally put 7.2 in gradle-wrapper.properties?

Anyway, once you have the zip file, you can extract it directly to the Gradle wrapper cache like this:

mkdir ~/.gradle/wrapper/dists/gradle-7.6-all/9f832ih6bniajn45pbmqhk2cw

cd ~/.gradle/wrapper/dists/gradle-7.6-all/9f832ih6bniajn45pbmqhk2cw

mv ~/Downloads/gradle-7.6-all.zip .

unzip gradle-7.6-all.zip

touch gradle-7.6-all.zip.lck

touch gradle-7.6-all.zip.ok

Now if you go back to your docker-compose folder and try again it should work.

Rick Herrick

Senior Software Developer

rickh...@flywheel.io

------ Original Message ------

From "'Nora K' via xnat_discussion" <xnat_di...@googlegroups.com>

To "xnat_discussion" <xnat_di...@googlegroups.com>

Date 1/26/2023 2:07:08 AM

Subject [XNAT Discussion] Java.Errors when Launching in Dockerized Container

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Nora K

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Jan 30, 2023, 4:18:37 PM1/30/23

to xnat_discussion

Thanks Rick, that helped to get gradle running, however I have the feeling that it didn't fix whatever it was causing the whole problem in the first place. It is not configuring (0%) and after more or less 3 Minutes I get the following Error:
FAILURE: Build failed with an exception.

* Where:
Build file '/home/kuechno/xnat-docker-compose/build.gradle' line: 8

* What went wrong:
Plugin [id: 'com.avast.gradle.docker-compose', version: '0.16.11'] was not found in any of the following sources:

- Gradle Core Plugins (plugin is not in 'org.gradle' namespace)
- Plugin Repositories (could not resolve plugin artifact 'com.avast.gradle.docker-compose:com.avast.gradle.docker-compose.gradle.plugin:0.16.11')
Searched in the following repositories:
Gradle Central Plugin Repository

* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to get full insights.

* Get more help at https://help.gradle.org

________________________

Running the whole thing with the --debug flag shows me an Network-is-unreachable-Error, which looks like this (sorry for that long one...):

________________________
2023-01-30T14:48:20.135+0100 [DEBUG] [org.gradle.internal.operations.DefaultBuildOperationRunner] Build operation 'Download https://plugins.gradle.org/m2/com/avast/gradle/docker-compose/com.avast.gradle.docker-compose.gradle.plugin/0.16.11/com.avast.gradle.docker-compose.gradle.plugin-0.16.11.pom' completed
2023-01-30T14:48:20.135+0100 [DEBUG] [org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess] Error while accessing remote repository Gradle Central Plugin Repository. Waiting 2000ms before next retry. 1 retries left
org.gradle.internal.resolve.ModuleVersionResolveException: Could not resolve com.avast.gradle.docker-compose:com.avast.gradle.docker-compose.gradle.plugin:0.16.11.
Caused by: org.gradle.api.resources.ResourceException: Could not get resource 'https://plugins.gradle.org/m2/com/avast/gradle/docker-compose/com.avast.gradle.docker-compose.gradle.plugin/0.16.11/com.avast.gradle.docker-compose.gradle.plugin-0.16.11.pom'.
at org.gradle.internal.resource.ResourceExceptions.failure(ResourceExceptions.java:74)
at org.gradle.internal.resource.ResourceExceptions.getFailed(ResourceExceptions.java:57)
at org.gradle.api.internal.artifacts.repositories.resolver.DefaultExternalResourceArtifactResolver.downloadByCoords(DefaultExternalResourceArtifactResolver.java:154)
at org.gradle.api.internal.artifacts.repositories.resolver.DefaultExternalResourceArtifactResolver.downloadStaticResource(DefaultExternalResourceArtifactResolver.java:94)
at org.gradle.api.internal.artifacts.repositories.resolver.DefaultExternalResourceArtifactResolver.resolveArtifact(DefaultExternalResourceArtifactResolver.java:60)
at org.gradle.api.internal.artifacts.repositories.metadata.AbstractRepositoryMetadataSource.parseMetaDataFromArtifact(AbstractRepositoryMetadataSource.java:78)
at org.gradle.api.internal.artifacts.repositories.metadata.AbstractRepositoryMetadataSource.create(AbstractRepositoryMetadataSource.java:68)
at org.gradle.api.internal.artifacts.repositories.metadata.DefaultMavenPomMetadataSource.create(DefaultMavenPomMetadataSource.java:40)
at org.gradle.api.internal.artifacts.repositories.metadata.RedirectingGradleMetadataModuleMetadataSource.create(RedirectingGradleMetadataModuleMetadataSource.java:51)
at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolver.resolveStaticDependency(ExternalResourceResolver.java:242)
at org.gradle.api.internal.artifacts.repositories.resolver.MavenResolver.doResolveComponentMetaData(MavenResolver.java:115)
at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolver$RemoteRepositoryAccess.resolveComponentMetaData(ExternalResourceResolver.java:457)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.CachingModuleComponentRepository$ResolveAndCacheRepositoryAccess.resolveComponentMetaData(CachingModuleComponentRepository.java:382)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.lambda$resolveComponentMetaData$5(ErrorHandlingModuleComponentRepository.java:152)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.lambda$tryResolveAndMaybeBlacklist$15(ErrorHandlingModuleComponentRepository.java:213)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.tryResolveAndMaybeBlacklist(ErrorHandlingModuleComponentRepository.java:227)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.tryResolveAndMaybeBlacklist(ErrorHandlingModuleComponentRepository.java:212)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.performOperationWithRetries(ErrorHandlingModuleComponentRepository.java:205)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.resolveComponentMetaData(ErrorHandlingModuleComponentRepository.java:151)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ComponentMetaDataResolveState.process(ComponentMetaDataResolveState.java:69)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ComponentMetaDataResolveState.resolve(ComponentMetaDataResolveState.java:61)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:139)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:120)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolveModule(RepositoryChainComponentMetaDataResolver.java:94)
at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolve(RepositoryChainComponentMetaDataResolver.java:65)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.ComponentResolversChain$ComponentMetaDataResolverChain.resolve(ComponentResolversChain.java:105)
at org.gradle.api.internal.artifacts.ivyservice.clientmodule.ClientModuleResolver.resolve(ClientModuleResolver.java:70)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.ComponentState.resolve(ComponentState.java:230)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.ComponentState.getResolveStateOrNull(ComponentState.java:177)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.calculateTargetConfigurations(EdgeState.java:223)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.attachToTargetConfigurations(EdgeState.java:152)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.attachToTargetRevisionsSerially(DependencyGraphBuilder.java:371)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolveEdges(DependencyGraphBuilder.java:254)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.traverseGraph(DependencyGraphBuilder.java:191)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolve(DependencyGraphBuilder.java:151)
at org.gradle.api.internal.artifacts.ivyservice.resolveengine.DefaultArtifactDependencyResolver.resolve(DefaultArtifactDependencyResolver.java:140)
at org.gradle.api.internal.artifacts.ivyservice.DefaultConfigurationResolver.resolveGraph(DefaultConfigurationResolver.java:195)
at org.gradle.api.internal.artifacts.ivyservice.ShortCircuitEmptyConfigurationResolver.resolveGraph(ShortCircuitEmptyConfigurationResolver.java:85)
at org.gradle.api.internal.artifacts.ivyservice.ErrorHandlingConfigurationResolver.resolveGraph(ErrorHandlingConfigurationResolver.java:76)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$1.call(DefaultConfiguration.java:656)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$1.call(DefaultConfiguration.java:647)
at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:204)
at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:199)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.call(DefaultBuildOperationRunner.java:53)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:73)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveGraphIfRequired(DefaultConfiguration.java:647)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.lambda$resolveExclusively$4(DefaultConfiguration.java:627)
at org.gradle.api.internal.initialization.RootScriptDomainObjectContext$CalculatedModelValueImpl.update(RootScriptDomainObjectContext.java:143)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveExclusively(DefaultConfiguration.java:624)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveToStateOrLater(DefaultConfiguration.java:611)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.getResolvedConfiguration(DefaultConfiguration.java:586)
at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration_Decorated.getResolvedConfiguration(Unknown Source)
at org.gradle.plugin.use.resolve.internal.ArtifactRepositoriesPluginResolver.exists(ArtifactRepositoriesPluginResolver.java:104)
at org.gradle.plugin.use.resolve.internal.ArtifactRepositoriesPluginResolver.resolve(ArtifactRepositoriesPluginResolver.java:60)
at org.gradle.plugin.use.resolve.internal.CompositePluginResolver.resolve(CompositePluginResolver.java:34)
at org.gradle.plugin.use.resolve.internal.AlreadyOnClasspathPluginResolver.resolve(AlreadyOnClasspathPluginResolver.java:57)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.resolveToFoundResult(DefaultPluginRequestApplicator.java:229)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.lambda$resolvePluginRequests$3(DefaultPluginRequestApplicator.java:168)
at org.gradle.util.internal.CollectionUtils.collect(CollectionUtils.java:212)
at org.gradle.util.internal.CollectionUtils.collect(CollectionUtils.java:206)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.resolvePluginRequests(DefaultPluginRequestApplicator.java:166)
at org.gradle.plugin.use.internal.DefaultPluginRequestApplicator.applyPlugins(DefaultPluginRequestApplicator.java:101)
at org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl.apply(DefaultScriptPluginFactory.java:117)
at org.gradle.configuration.BuildOperationScriptPlugin$1.run(BuildOperationScriptPlugin.java:65)
at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:29)
at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:26)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.run(DefaultBuildOperationRunner.java:47)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:68)
at org.gradle.configuration.BuildOperationScriptPlugin.lambda$apply$0(BuildOperationScriptPlugin.java:62)
at org.gradle.configuration.internal.DefaultUserCodeApplicationContext.apply(DefaultUserCodeApplicationContext.java:44)
at org.gradle.configuration.BuildOperationScriptPlugin.apply(BuildOperationScriptPlugin.java:62)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.lambda$applyToMutableState$0(DefaultProjectStateRegistry.java:360)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.fromMutableState(DefaultProjectStateRegistry.java:378)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.applyToMutableState(DefaultProjectStateRegistry.java:359)
at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:42)
at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:26)
at org.gradle.configuration.project.ConfigureActionsProjectEvaluator.evaluate(ConfigureActionsProjectEvaluator.java:35)
at org.gradle.configuration.project.LifecycleProjectEvaluator$EvaluateProject.lambda$run$0(LifecycleProjectEvaluator.java:109)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.lambda$applyToMutableState$0(DefaultProjectStateRegistry.java:360)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.lambda$fromMutableState$1(DefaultProjectStateRegistry.java:383)
at org.gradle.internal.work.DefaultWorkerLeaseService.withReplacedLocks(DefaultWorkerLeaseService.java:345)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.fromMutableState(DefaultProjectStateRegistry.java:383)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.applyToMutableState(DefaultProjectStateRegistry.java:359)
at org.gradle.configuration.project.LifecycleProjectEvaluator$EvaluateProject.run(LifecycleProjectEvaluator.java:100)
at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:29)
at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:26)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.run(DefaultBuildOperationRunner.java:47)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:68)
at org.gradle.configuration.project.LifecycleProjectEvaluator.evaluate(LifecycleProjectEvaluator.java:72)
at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:762)
at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:153)
at org.gradle.api.internal.project.ProjectLifecycleController.lambda$ensureSelfConfigured$1(ProjectLifecycleController.java:63)
at org.gradle.internal.model.StateTransitionController.lambda$doTransition$12(StateTransitionController.java:236)
at org.gradle.internal.model.StateTransitionController.doTransition(StateTransitionController.java:247)
at org.gradle.internal.model.StateTransitionController.doTransition(StateTransitionController.java:235)
at org.gradle.internal.model.StateTransitionController.lambda$maybeTransitionIfNotCurrentlyTransitioning$9(StateTransitionController.java:196)
at org.gradle.internal.work.DefaultSynchronizer.withLock(DefaultSynchronizer.java:34)
at org.gradle.internal.model.StateTransitionController.maybeTransitionIfNotCurrentlyTransitioning(StateTransitionController.java:192)
at org.gradle.api.internal.project.ProjectLifecycleController.ensureSelfConfigured(ProjectLifecycleController.java:63)
at org.gradle.api.internal.project.DefaultProjectStateRegistry$ProjectStateImpl.ensureConfigured(DefaultProjectStateRegistry.java:334)
at org.gradle.execution.TaskPathProjectEvaluator.configure(TaskPathProjectEvaluator.java:33)
at org.gradle.execution.TaskPathProjectEvaluator.configureHierarchy(TaskPathProjectEvaluator.java:47)
at org.gradle.configuration.DefaultProjectsPreparer.prepareProjects(DefaultProjectsPreparer.java:50)
at org.gradle.configuration.BuildTreePreparingProjectsPreparer.prepareProjects(BuildTreePreparingProjectsPreparer.java:64)
at org.gradle.configuration.BuildOperationFiringProjectsPreparer$ConfigureBuild.run(BuildOperationFiringProjectsPreparer.java:52)
at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:29)
at org.gradle.internal.operations.DefaultBuildOperationRunner$1.execute(DefaultBuildOperationRunner.java:26)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.run(DefaultBuildOperationRunner.java:47)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:68)
at org.gradle.configuration.BuildOperationFiringProjectsPreparer.prepareProjects(BuildOperationFiringProjectsPreparer.java:40)
at org.gradle.initialization.VintageBuildModelController.lambda$prepareProjects$2(VintageBuildModelController.java:84)
at org.gradle.internal.model.StateTransitionController.lambda$doTransition$12(StateTransitionController.java:236)
at org.gradle.internal.model.StateTransitionController.doTransition(StateTransitionController.java:247)
at org.gradle.internal.model.StateTransitionController.doTransition(StateTransitionController.java:235)
at org.gradle.internal.model.StateTransitionController.lambda$transitionIfNotPreviously$10(StateTransitionController.java:210)
at org.gradle.internal.work.DefaultSynchronizer.withLock(DefaultSynchronizer.java:34)
at org.gradle.internal.model.StateTransitionController.transitionIfNotPreviously(StateTransitionController.java:206)
at org.gradle.initialization.VintageBuildModelController.prepareProjects(VintageBuildModelController.java:84)
at org.gradle.initialization.VintageBuildModelController.prepareToScheduleTasks(VintageBuildModelController.java:71)
at org.gradle.internal.build.DefaultBuildLifecycleController.lambda$prepareToScheduleTasks$2(DefaultBuildLifecycleController.java:129)
at org.gradle.internal.model.StateTransitionController.lambda$doTransition$12(StateTransitionController.java:236)
at org.gradle.internal.model.StateTransitionController.doTransition(StateTransitionController.java:247)
at org.gradle.internal.model.StateTransitionController.doTransition(StateTransitionController.java:235)
at org.gradle.internal.model.StateTransitionController.lambda$maybeTransition$8(StateTransitionController.java:187)
at org.gradle.internal.work.DefaultSynchronizer.withLock(DefaultSynchronizer.java:34)
at org.gradle.internal.model.StateTransitionController.maybeTransition(StateTransitionController.java:183)
at org.gradle.internal.build.DefaultBuildLifecycleController.prepareToScheduleTasks(DefaultBuildLifecycleController.java:127)
at org.gradle.internal.buildtree.DefaultBuildTreeWorkPreparer.scheduleRequestedTasks(DefaultBuildTreeWorkPreparer.java:36)
at org.gradle.internal.buildtree.DefaultBuildTreeLifecycleController.lambda$doScheduleAndRunTasks$3(DefaultBuildTreeLifecycleController.java:96)
at org.gradle.composite.internal.DefaultIncludedBuildTaskGraph.withNewWorkGraph(DefaultIncludedBuildTaskGraph.java:109)
at org.gradle.internal.buildtree.DefaultBuildTreeLifecycleController.doScheduleAndRunTasks(DefaultBuildTreeLifecycleController.java:95)
at org.gradle.internal.buildtree.DefaultBuildTreeLifecycleController.lambda$scheduleAndRunTasks$1(DefaultBuildTreeLifecycleController.java:76)
at org.gradle.internal.buildtree.DefaultBuildTreeLifecycleController.lambda$runBuild$5(DefaultBuildTreeLifecycleController.java:113)
at org.gradle.internal.model.StateTransitionController.lambda$transition$5(StateTransitionController.java:166)
at org.gradle.internal.model.StateTransitionController.doTransition(StateTransitionController.java:247)
at org.gradle.internal.model.StateTransitionController.lambda$transition$6(StateTransitionController.java:166)
at org.gradle.internal.work.DefaultSynchronizer.withLock(DefaultSynchronizer.java:44)
at org.gradle.internal.model.StateTransitionController.transition(StateTransitionController.java:166)
at org.gradle.internal.buildtree.DefaultBuildTreeLifecycleController.runBuild(DefaultBuildTreeLifecycleController.java:110)
at org.gradle.internal.buildtree.DefaultBuildTreeLifecycleController.scheduleAndRunTasks(DefaultBuildTreeLifecycleController.java:76)
at org.gradle.internal.buildtree.DefaultBuildTreeLifecycleController.scheduleAndRunTasks(DefaultBuildTreeLifecycleController.java:71)
at org.gradle.tooling.internal.provider.ExecuteBuildActionRunner.run(ExecuteBuildActionRunner.java:31)
at org.gradle.launcher.exec.ChainingBuildActionRunner.run(ChainingBuildActionRunner.java:35)
at org.gradle.internal.buildtree.ProblemReportingBuildActionRunner.run(ProblemReportingBuildActionRunner.java:49)
at org.gradle.launcher.exec.BuildOutcomeReportingBuildActionRunner.run(BuildOutcomeReportingBuildActionRunner.java:65)
at org.gradle.tooling.internal.provider.FileSystemWatchingBuildActionRunner.run(FileSystemWatchingBuildActionRunner.java:136)
at org.gradle.launcher.exec.BuildCompletionNotifyingBuildActionRunner.run(BuildCompletionNotifyingBuildActionRunner.java:41)
at org.gradle.launcher.exec.RootBuildLifecycleBuildActionExecutor.lambda$execute$0(RootBuildLifecycleBuildActionExecutor.java:40)
at org.gradle.composite.internal.DefaultRootBuildState.run(DefaultRootBuildState.java:122)
at org.gradle.launcher.exec.RootBuildLifecycleBuildActionExecutor.execute(RootBuildLifecycleBuildActionExecutor.java:40)
at org.gradle.internal.buildtree.DefaultBuildTreeContext.execute(DefaultBuildTreeContext.java:40)
at org.gradle.launcher.exec.BuildTreeLifecycleBuildActionExecutor.lambda$execute$0(BuildTreeLifecycleBuildActionExecutor.java:65)
at org.gradle.internal.buildtree.BuildTreeState.run(BuildTreeState.java:53)
at org.gradle.launcher.exec.BuildTreeLifecycleBuildActionExecutor.execute(BuildTreeLifecycleBuildActionExecutor.java:65)
at org.gradle.launcher.exec.RunAsBuildOperationBuildActionExecutor$3.call(RunAsBuildOperationBuildActionExecutor.java:61)
at org.gradle.launcher.exec.RunAsBuildOperationBuildActionExecutor$3.call(RunAsBuildOperationBuildActionExecutor.java:57)
at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:204)
at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:199)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.call(DefaultBuildOperationRunner.java:53)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:73)
at org.gradle.launcher.exec.RunAsBuildOperationBuildActionExecutor.execute(RunAsBuildOperationBuildActionExecutor.java:57)
at org.gradle.launcher.exec.RunAsWorkerThreadBuildActionExecutor.lambda$execute$0(RunAsWorkerThreadBuildActionExecutor.java:36)
at org.gradle.internal.work.DefaultWorkerLeaseService.withLocks(DefaultWorkerLeaseService.java:249)
at org.gradle.internal.work.DefaultWorkerLeaseService.runAsWorkerThread(DefaultWorkerLeaseService.java:109)
at org.gradle.launcher.exec.RunAsWorkerThreadBuildActionExecutor.execute(RunAsWorkerThreadBuildActionExecutor.java:36)
at org.gradle.tooling.internal.provider.continuous.ContinuousBuildActionExecutor.execute(ContinuousBuildActionExecutor.java:110)
at org.gradle.tooling.internal.provider.SubscribableBuildActionExecutor.execute(SubscribableBuildActionExecutor.java:64)
at org.gradle.internal.session.DefaultBuildSessionContext.execute(DefaultBuildSessionContext.java:46)
at org.gradle.tooling.internal.provider.BuildSessionLifecycleBuildActionExecuter$ActionImpl.apply(BuildSessionLifecycleBuildActionExecuter.java:100)
at org.gradle.tooling.internal.provider.BuildSessionLifecycleBuildActionExecuter$ActionImpl.apply(BuildSessionLifecycleBuildActionExecuter.java:88)
at org.gradle.internal.session.BuildSessionState.run(BuildSessionState.java:69)
at org.gradle.tooling.internal.provider.BuildSessionLifecycleBuildActionExecuter.execute(BuildSessionLifecycleBuildActionExecuter.java:62)
at org.gradle.tooling.internal.provider.BuildSessionLifecycleBuildActionExecuter.execute(BuildSessionLifecycleBuildActionExecuter.java:41)
at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:63)
at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:31)
at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:52)
at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:40)
at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:47)
at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:31)
at org.gradle.launcher.daemon.server.exec.ExecuteBuild.doBuild(ExecuteBuild.java:65)
at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:37)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.WatchForDisconnection.execute(WatchForDisconnection.java:39)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.ResetDeprecationLogger.execute(ResetDeprecationLogger.java:29)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.RequestStopIfSingleUsedDaemon.execute(RequestStopIfSingleUsedDaemon.java:35)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.create(ForwardClientInput.java:78)
at org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.create(ForwardClientInput.java:75)
at org.gradle.util.internal.Swapper.swap(Swapper.java:38)
at org.gradle.launcher.daemon.server.exec.ForwardClientInput.execute(ForwardClientInput.java:75)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.LogAndCheckHealth.execute(LogAndCheckHealth.java:55)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.LogToClient.doBuild(LogToClient.java:63)
at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:37)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment.doBuild(EstablishBuildEnvironment.java:84)
at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:37)
at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:104)
at org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy$1.run(StartBuildOrRespondWithBusy.java:52)
at org.gradle.launcher.daemon.server.DaemonStateCoordinator$1.run(DaemonStateCoordinator.java:297)
at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:49)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
Caused by: org.gradle.internal.resource.transport.http.HttpRequestException: Could not GET 'https://plugins.gradle.org/m2/com/avast/gradle/docker-compose/com.avast.gradle.docker-compose.gradle.plugin/0.16.11/com.avast.gradle.docker-compose.gradle.plugin-0.16.11.pom'.
at org.gradle.internal.resource.transport.http.HttpClientHelper.performRequest(HttpClientHelper.java:130)
at org.gradle.internal.resource.transport.http.HttpClientHelper.performRawGet(HttpClientHelper.java:92)
at org.gradle.internal.resource.transport.http.HttpClientHelper.performGet(HttpClientHelper.java:96)
at org.gradle.internal.resource.transport.http.HttpResourceAccessor.openResource(HttpResourceAccessor.java:45)
at org.gradle.internal.resource.transport.http.HttpResourceAccessor.openResource(HttpResourceAccessor.java:30)
at org.gradle.internal.resource.transfer.AbstractExternalResourceAccessor.withContent(AbstractExternalResourceAccessor.java:32)
at org.gradle.internal.resource.transfer.DefaultExternalResourceConnector.withContent(DefaultExternalResourceConnector.java:59)
at org.gradle.internal.resource.transfer.ProgressLoggingExternalResourceAccessor$DownloadOperation.call(ProgressLoggingExternalResourceAccessor.java:122)
at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:204)
at org.gradle.internal.operations.DefaultBuildOperationRunner$CallableBuildOperationWorker.execute(DefaultBuildOperationRunner.java:199)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:66)
at org.gradle.internal.operations.DefaultBuildOperationRunner$2.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:157)
at org.gradle.internal.operations.DefaultBuildOperationRunner.execute(DefaultBuildOperationRunner.java:59)
at org.gradle.internal.operations.DefaultBuildOperationRunner.call(DefaultBuildOperationRunner.java:53)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:73)
at org.gradle.internal.resource.transfer.ProgressLoggingExternalResourceAccessor.withContent(ProgressLoggingExternalResourceAccessor.java:45)
at org.gradle.internal.resource.transfer.AccessorBackedExternalResource.withContentIfPresent(AccessorBackedExternalResource.java:99)
at org.gradle.internal.resource.transfer.DefaultCacheAwareExternalResourceAccessor.copyToCache(DefaultCacheAwareExternalResourceAccessor.java:191)
at org.gradle.internal.resource.transfer.DefaultCacheAwareExternalResourceAccessor.lambda$getResource$1(DefaultCacheAwareExternalResourceAccessor.java:89)
at org.gradle.cache.internal.ProducerGuard$AdaptiveProducerGuard.guardByKey(ProducerGuard.java:97)
at org.gradle.internal.resource.transfer.DefaultCacheAwareExternalResourceAccessor.getResource(DefaultCacheAwareExternalResourceAccessor.java:83)
at org.gradle.api.internal.artifacts.repositories.resolver.DefaultExternalResourceArtifactResolver.downloadByCoords(DefaultExternalResourceArtifactResolver.java:149)
... 225 more
Caused by: org.apache.http.conn.HttpHostConnectException: Connect to plugins.gradle.org:443 [plugins.gradle.org/104.18.191.9, plugins.gradle.org/104.18.190.9, plugins.gradle.org/2606:4700:0:0:0:0:6812:bf09, plugins.gradle.org/2606:4700:0:0:0:0:6812:be09] failed: Network is unreachable (connect failed)
at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:156)
at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:376)
at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:393)
at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:186)
at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:89)
at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:185)
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:83)
at org.gradle.internal.resource.transport.http.HttpClientHelper.performHttpRequest(HttpClientHelper.java:170)
at org.gradle.internal.resource.transport.http.HttpClientHelper.performHttpRequest(HttpClientHelper.java:146)
at org.gradle.internal.resource.transport.http.HttpClientHelper.executeGetOrHead(HttpClientHelper.java:135)
at org.gradle.internal.resource.transport.http.HttpClientHelper.performRequest(HttpClientHelper.java:105)
... 247 more
Caused by: java.net.ConnectException: Network is unreachable (connect failed)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:607)
at org.apache.http.conn.ssl.SSLConnectionSocketFactory.connectSocket(SSLConnectionSocketFactory.java:368)
at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:142)
... 259 more
________________________

I'm kinda loosing my mind over this because I can manually access everything. Any Idea what could help?

Rick Herrick

unread,

Jan 30, 2023, 5:20:16 PM1/30/23

to xnat_discussion

A couple things to try:

Create or clone a simple project that uses gradle (e.g. go to https://start.spring.io and create a project that uses Gradle - Groovy and Java 8 (you’ll need to use Spring Boot 2.7.8 for Java 8 compatibility), unzip the resulting archive, cd to the folder where that was extracted, then try running ./gradlew jar
Try running the xnat-docker-compose build on another machine entirely
Check if there are any options that might affect network configuration in gradle.properties, both in the repo folder (i.e. right next to build.gradle) and globally in ~/.gradle

Other than that I really can’t say. If you can run something like this:

curl -o docker-compose.pom https://plugins.gradle.org/m2/com/avast/gradle/docker-compose/com.avast.gradle.docker-compose.gradle.plugin/0.16.11/com.avast.gradle.docker-compose.gradle.plugin-0.16.11.pom

And then run this from the same shell and environment and it fails:

./gradlew fullStackComposeBuild fullStackComposeUp

That would indicate that this is a Java-specific issue. You may try looking in your environment to see if anything would be configuring a proxy or otherwise messing with the network settings for Java. The Oracle docs on proxies would be a good place to start.

Rick Herrick

Senior Software Developer

rickh...@flywheel.io

------ Original Message ------

From "'Nora K' via xnat_discussion" <xnat_di...@googlegroups.com>

To "xnat_discussion" <xnat_di...@googlegroups.com>

Date 1/30/2023 3:18:37 PM

Subject Re: [XNAT Discussion] Java.Errors when Launching in Dockerized Container

To view this discussion on the web visit https://groups.google.com/d/msgid/xnat_discussion/75e107b5-50e4-4b67-8836-6298c9349b0en%40googlegroups.com.

Nora K

unread,

Feb 8, 2023, 3:54:22 AM2/8/23

to xnat_discussion

Hey Rick!
Thank you so much for your help. Thanks to you I could figure out, that it was Java Proxy Problem, which I fixed in JAVA_DIRECTORY/jre/lib/net.properties. I actually got another problem (also Proxy stuff) which I could solve editing my docker proxy-config file in /etc/systemd/system/docker.service.d/http-proxy.conf

Unfortunately, Im still not able to get through the entire build process. My current Error looks like that:

____________________________________________

> Task :fullStackComposeBuild
xnat-smtp uses an image, skipping
xnat-activemq uses an image, skipping
xnat-traefik uses an image, skipping
Building xnat-db
Building xnat-pacs
Service 'xnat-pacs' failed to build: The command '/bin/sh -c apt-get update && apt-get -y install postgresql-client' returned a non-zero code: 100

> Task :fullStackComposeBuild FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':fullStackComposeBuild'.
> Exit-code 1 when calling docker-compose, stdout: Step 1/3 : FROM postgres:12.2-alpine
---> ae192c4d3ada
Step 2/3 : RUN if [ ! -z ${POSTGRES_GID} && ${POSTGRES_GID} != 70 ]; then sed -i'' -E 's/postgres:x:70:postgres/postgres:x:'${POSTGRES_GID}':postgres/' /etc/group; sed -i'' -E 's/postgres:x:70:70:/postgres:x:'${POSTGRES_UID}':'${POSTGRES_GID}':/' /etc/passwd; fi;
---> Using cache
---> e26b2bce616d
Step 3/3 : ADD --chown=postgres:postgres XNAT.sql /docker-entrypoint-initdb.d/
---> Using cache
---> 1317d011edec

Successfully built 1317d011edec
Successfully tagged xnat-db:latest
Step 1/20 : FROM jodogne/orthanc-plugins
---> 81870d21ea8e
Step 2/20 : MAINTAINER Matt Kelsey <kel...@wustl.edu>
---> Using cache
---> 74bef50fb16a
Step 3/20 : ARG XNAT_DATASOURCE_USERNAME=${XNAT_DATASOURCE_USERNAME}
---> Using cache
---> 94f8e92e869a
Step 4/20 : ARG XNAT_DATASOURCE_URL=${XNAT_DATASOURCE_URL}
---> Using cache
---> cf5790de54b7
Step 5/20 : ARG XNAT_URL=http://xnat-web
---> Using cache
---> 2d3b7c610562
Step 6/20 : ADD wait-for-postgres.sh /usr/local/bin/wait-for-postgres.sh
---> Using cache
---> 62e52196ba56
Step 7/20 : RUN apt-get update && apt-get -y install postgresql-client
---> Running in 5e40b500deed
Err:1 http://deb.debian.org/debian buster InRelease
Could not connect to deb.debian.org:80 (146.75.122.132), connection timed out
Err:2 http://deb.debian.org/debian buster-updates InRelease
Unable to connect to deb.debian.org:http:
Err:3 http://security.debian.org/debian-security buster/updates InRelease
Could not connect to security.debian.org:80 (151.101.2.132), connection timed out Could not connect to security.debian.org:80 (151.101.130.132), connection timed out Could not connect to security.debian.org:80 (151.101.194.132), connection timed out Could not connect to security.debian.org:80 (151.101.66.132), connection timed out
Reading package lists...
W: Failed to fetch http://deb.debian.org/debian/dists/buster/InRelease Could not connect to deb.debian.org:80 (146.75.122.132), connection timed out
W: Failed to fetch http://security.debian.org/debian-security/dists/buster/updates/InRelease Could not connect to security.debian.org:80 (151.101.2.132), connection timed out Could not connect to security.debian.org:80 (151.101.130.132), connection timed out Could not connect to security.debian.org:80 (151.101.194.132), connection timed out Could not connect to security.debian.org:80 (151.101.66.132), connection timed out
W: Failed to fetch http://deb.debian.org/debian/dists/buster-updates/InRelease Unable to connect to deb.debian.org:http:
W: Some index files failed to download. They have been ignored, or old ones used instead.
Reading package lists...
Building dependency tree...
Reading state information...
E: Unable to locate package postgresql-client

* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to get full insights.

* Get more help at https://help.gradle.org

BUILD FAILED in 36s
3 actionable tasks: 1 executed, 2 up-to-date

_____________________________________________

I had a look at this one: https://stackoverflow.com/questions/65297987/docker-error-could-not-connect-to-deb-debian-org-111-connection-refused

But adding these Environments in the xnat/Dockerfile and Orthanc/Dockerfile didn't change a thing (which would have surprised me)

So I then tried this: https://stackoverflow.com/questions/44080220/docker-failed-to-fetch-http-deb-debian-org-debian-dists-jessie-inrelease#56473782

... and added those DNS to the /etc/docker/daemon.json restarted the daemon and docker but same problem still...

The point is that I can't figure out if it is a problem with my local Docker-Installation (even though the hello-world works) or with the specific project itself.

Just because I have also read this in some other posts: running apt-get update outside of Docker works just fine.

You would save my week, if you have any idea what I could do!
All the best,
Nora

Rick Herrick

unread,

Feb 8, 2023, 12:16:03 PM2/8/23

to xnat_di...@googlegroups.com

I have no idea on this one. The IP to which deb.debian.org is resolving here, 146.75.122.132, is not what I see when I try to resolve it here but I don’t think that means much: 146.75.122.132 is in Goeteborg, Sweden, while 199.232.10.132 (which is what I get) is in San Francisco, BUT both are hosted by fastly.com, so maybe those are different IPs for debian.org and that changes depending on where you’re coming from, DNS configuration, etc.

Interestingly (if not helpfully), security.debian.org resolves to the same IP, 151.101.2.132, which is responding properly.

I was able to build the Orthanc image directly without issue on my machine.

You can try running the docker compose solution without Gradle with something like:

docker-compose up --detach

I don’t know if that will help (in fact, I doubt it will!), but I really don’t have any other ideas.

Rick Herrick

Senior Software Developer

rickh...@flywheel.io

------ Original Message ------

From "'Nora K' via xnat_discussion" <xnat_di...@googlegroups.com>

To "xnat_discussion" <xnat_di...@googlegroups.com>

Date 2/8/2023 2:54:21 AM

Subject Re: Re[2]: [XNAT Discussion] Java.Errors when Launching in Dockerized Container

To view this discussion on the web visit https://groups.google.com/d/msgid/xnat_discussion/098af536-8a47-407c-83e6-c19aa1362054n%40googlegroups.com.

John Flavin

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Feb 8, 2023, 4:36:56 PM2/8/23

to xnat_di...@googlegroups.com

Total guess, but it looks to me like this could be more proxy issues. Why else would docker have trouble connecting to a standard public server like debian.org?

How to fix that, I have no clue. But that's where I would poke around.

John Flavin

Backend Team Lead

johnf...@flywheel.io

He/Him

flywheel.io