Mouhamad Al Sayed ALi
unread,Apr 14, 2011, 4:34:01 AM4/14/11Sign in to reply to author
Sign in to forward
You do not have permission to delete messages in this group
Either email addresses are anonymous for this group or you need the view member email addresses permission to view the original message
to xcpu mailing list
Hello all,
I have been trying to run a binary ARPCLIM-mvapich-gcc450-debug3
(compiled by MVAPICH) using
mpirun -np 2 -machinefile file ARPCLIM-mvapich-gcc450-debug3
But, I get the following error.
------
OASIS3 environment variable :
OASIS3DEBUGLEVEL environment variable :
LOASIS3,IOASIS3LVL,IOASIS3DEBUGLVL = F 0 0
LOASIS3,IOASIS3LVL,IOASIS3DEBUGLVL = F 0 0
MPL_INIT : LMPLUSERCOMM not used
Communicator : ********
MPL_INIT : LMPLUSERCOMM not used
Communicator : ********
MPL_INIT : LMPLUSERCOMM not used
MPL_INIT : LMPLUSERCOMM not used
Communicator : ********
Communicator : ********
signal_drhook(SIGABRT=6): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGBUS=7): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGSEGV=11): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGILL=4): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGSTKFLT=16): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGFPE=8): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGTRAP=5): New handler installed at 0x171d73f; old
preserved at 0x0
MPL_GROUPS_CREATE: MPI_CART_CREATE 12 FROM PROCESSOR 2
signal_drhook(SIGINT=2): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGQUIT=3): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGTERM=15): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGXCPU=24): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGSYS=31): New handler installed at 0x171d73f; old
preserved at 0x0
Invalid argument in process 2
MPL_GROUPS_CREATE: MPI_CART_CREATE 12 FROM PROCESSOR 1
Invalid argument in process 1
[myproc#2,tid#1,pid#-1,signal#11(SIGSEGV)]: Received signal :: 0MB
(heap), 0MB (rss), 0MB (stack), 0 (paging), nsigs 1, time 0.00
[myproc#1,tid#1,pid#-1,signal#11(SIGSEGV)]: Received signal :: 0MB
(heap), 0MB (rss), 0MB (stack), 0 (paging), nsigs 1, time 0.00
Activating SIGALRM=14 and calling alarm(10), time = 0.00
JSETSIG: sl->active = 0
Activating SIGALRM=14 and calling alarm(10), time = 0.00
JSETSIG: sl->active = 0
signal_drhook(SIGALRM=14): New handler installed at 0x171d73f; old
preserved at 0x0
signal_drhook(SIGALRM=14): New handler installed at 0x171d73f; old
preserved at 0x0
tid#1 starting drhook traceback, time = 0.00
tid#1 starting drhook traceback, time = 0.00
tid#1 starting sigdump traceback, time = 0.00
[gdb__sigdump] : Received signal#11(SIGSEGV), pid=-1
tid#1 starting sigdump traceback, time = 0.00
[gdb__sigdump] : Received signal#11(SIGSEGV), pid=-1
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:826 :
ARPCLIM-mvapich-gcc450-debug3 [0x171d724]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:1003 :
ARPCLIM-mvapich-gcc450-debug3 [0x171dc2f]
<Unknown> :
libpthread.so.0 [0x30e320de70]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/mpl_groups.F90:65 :
ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sumpini.F90:274 :
ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/su0yoma.F90:163 :
ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/cnt0.F90:143 :
ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/master.F90:35 :
ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> :
libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:826 :
ARPCLIM-mvapich-gcc450-debug3 [0x171d724]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:1003 :
ARPCLIM-mvapich-gcc450-debug3 [0x171dc2f]
<Unknown> :
libpthread.so.0 [0x30e320de70]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/mpl_groups.F90:65 :
ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sumpini.F90:274 :
ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/su0yoma.F90:163 :
ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/cnt0.F90:143 :
ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/master.F90:35 :
ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> :
libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> :
ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
[LinuxTraceBack] : End of backtrace(s)
Done tracebacks, calling exit with sig=11, time = 0.10
ABOR1 CALLED
Dr.Hook calls ABOR1 ...
ABORT! 2 Dr.Hook calls ABOR1 ...
[LinuxTraceBack] : End of backtrace(s)
Done tracebacks, calling exit with sig=11, time = 0.10
ABOR1 CALLED
Dr.Hook calls ABOR1 ...
ABORT! 1 Dr.Hook calls ABOR1 ...
MPL_ABORT: CALLED FROM PROCESSOR 1 THRD 1
MPL_ABORT: THRD 1 Dr.Hook calls ABOR1 ...
MPL_ABORT: CALLED FROM PROCESSOR 2 THRD 1
MPL_ABORT: THRD 1 Dr.Hook calls ABOR1 ...
SDL_TRACEBACK: Calling LINUX_TRBK, THRD = 1
SDL_TRACEBACK: Calling LINUX_TRBK, THRD = 1
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
[LinuxTraceBack]: Backtrace(s) for program 'ARPCLIM-mvapich-gcc450-
debug3' :
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:172 :
ARPCLIM-mvapich-gcc450-debug3 [0x178244e]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sdl_module.F90:71 :
ARPCLIM-mvapich-gcc450-debug3 [0x17280b0]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_abort_mod.F90:36 : ARPCLIM-mvapich-gcc450-debug3 [0x1710927]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
abor1.F90:41 : ARPCLIM-mvapich-gcc450-debug3 [0x1718d72]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:
1007 : ARPCLIM-mvapich-gcc450-debug3 [0x171dc90]
<Unknown> : libpthread.so.0 [0x30e320de70]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_groups.F90:65 : ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
sumpini.F90:274 : ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
su0yoma.F90:163 : ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
cnt0.F90:143 : ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
master.F90:35 : ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> : libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
[LinuxTraceBack] : End of backtrace(s)
SDL_TRACEBACK: Done LINUX_TRBK, THRD = 1
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:92 :
ARPCLIM-mvapich-gcc450-debug3 [0x1782106]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/linuxtrbk.c:172 :
ARPCLIM-mvapich-gcc450-debug3 [0x178244e]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/sdl_module.F90:71 :
ARPCLIM-mvapich-gcc450-debug3 [0x17280b0]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_abort_mod.F90:36 : ARPCLIM-mvapich-gcc450-debug3 [0x1710927]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
abor1.F90:41 : ARPCLIM-mvapich-gcc450-debug3 [0x1718d72]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/drhook.c:
1007 : ARPCLIM-mvapich-gcc450-debug3 [0x171dc90]
<Unknown> : libpthread.so.0 [0x30e320de70]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19e7bf2]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x19be54b]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
mpl_groups.F90:65 : ARPCLIM-mvapich-gcc450-debug3 [0x1753684]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
sumpini.F90:274 : ARPCLIM-mvapich-gcc450-debug3 [0x52325f]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
su0yoma.F90:163 : ARPCLIM-mvapich-gcc450-debug3 [0x41419a]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
cnt0.F90:143 : ARPCLIM-mvapich-gcc450-debug3 [0x407fb8]
/tmp/tmp.drebeix2/gmktmp.26225/Pcplpack/dirwork/
master.F90:35 : ARPCLIM-mvapich-gcc450-debug3 [0x407d41]
<Unknown> : libc.so.6(__libc_start_main+0xf4) [0x30e261d8b4]
<Unknown> : ARPCLIM-mvapich-gcc450-debug3 [0x407c09]
[LinuxTraceBack] : End of backtrace(s)
SDL_TRACEBACK: Done LINUX_TRBK, THRD = 1
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
=====================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= EXIT CODE: 256
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
=====================================================================================
---------
Many thanks for your help,
Mouhamad Al sayed ali
post-doctoral in applied mathematics