I'm sorry you're running into trouble. Which version of Wordcycler
are you using? (You can find out by going to "About" on the
right-click menu.) I released an update (1.2.1) earlier this week
that I think might address your issue.
Last week, Instapaper started being much more strict in rate-limiting
incoming traffic. One area that effected was archiving, since each
archive action is a separate HTTP request. Before, if an article was
deleted, it didn't check to see if it successfully archived. Then,
later in the sync, it would redownload those articles because they
would still be on the Instapaper list. The new version corrects that.
If an article fails to archive, it will tell you, and not redownload
it.
Of course, let me know if the current version doesn't work correctly.
-James
Let me know if you run into any more problems.
-James