Invitation to join the COVID-19 curation cafe on 18th March

[Pham, Nhung (BIGCAT)]

Hi everyone,

On 18th March at 15.00 - 17.00 (GMT+1) we will organize the first curation cafe of this year 2021.

In this cafe, we will focus on COVID-19 pathways. Beside curating existing pathways in the WikiPathways portal, we will also provide literature to draw new pathways in PathVisio. 

We welcome experienced WikiPathways curators to join our curation café. Please contact me (n.p...@maastrichtuniversity.nl) if you are interested in joining the event.

We are looking forward to having you there!

Regards,

Nhung Pham, Ph.D.

Postdoctoral researcher at the department of Bioinformatics (BiGCaT) 

Maastricht University, The Netherlands

[Egon Willighagen]

Hi Nhung,

On Tue, Mar 9, 2021 at 11:48 AM Pham, Nhung (BIGCAT) <n.p...@maastrichtuniversity.nl> wrote:

On 18th March at 15.00 - 17.00 (GMT+1) we will organize the first curation cafe of this year 2021. 

In this cafe, we will focus on COVID-19 pathways. Beside curating existing pathways in the WikiPathways portal, we will also provide literature to draw new pathways in PathVisio. 

Do you already know what kind or curation you are aiming for? What things to fix? I like to know that, so that I can update the curation reports [0] to make sure they are as helpful as possible.

Egon

0.https://wikipathways.github.io/SARS-CoV-2-WikiPathways/

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Have you heard about Wikidata already? "Use Scholia and Wikidata to find scientific literature" is a new tutorial from my colleague Lauren Dupuis. https://laurendupuis.github.io/Scholia_tutorial/

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E.L. Willighagen
Department of Bioinformatics - BiGCaT
Maastricht University (http://www.bigcat.unimaas.nl/)
Homepage: http://egonw.github.com/
Blog: http://chem-bla-ics.blogspot.com/
PubList: https://www.zotero.org/egonw
ORCID: 0000-0001-7542-0286
ImpactStory: https://impactstory.org/u/egonwillighagen

[Nhung Pham]

Hi Egon,

 We are planning to fix  the missing node annotations and unconnected lines. We will also include the missing references from your curation report. 

Nhung,

[Egon Willighagen]

Okay, I'll see what I can do about listing nodes without identifiers...

Egon

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[Egon Willighagen]

I added a test for this, and it find 95 datanodes without an identifier (in the COVID dataset; ~9000 in all pathways): https://jenkins.bigcat.unimaas.nl/job/WikiPathways%20Curation%20(COVID%20Curation)/lastCompletedBuild/testReport/nl.unimaas.bigcat.wikipathways.curator/DataNodes/dataNodesWithoutIdentifier/

Grtz,

Egon