Hi,
Hi, I am trying to upload a pathway I created in Cytoscape to WikiPathways, which only considers gpml or xml file formats for uploading a pathway. According to its author guide, steps are:
1. Install PathVisio tool
2. Import pathway in gpml or xml file formats
3. Upload the network using WikiPathway plugin.
I am stuck at step 2 where I tried importing my Cytoscape pathway as xml file, the PathVisio tool returned error: "Not supported file for pathway". Also, I can't generate gpml file format using Cytoscape.
Please, guide me how I can resolve abovementioned issues to upload my pathway in WikiPathways. Also, is there any other approach or at any step where I might be doing some mistake, please let me know.
Thanks & Regards.
Aparna Chaturvedi
PhD Scholar
University of Allahabad
Uttar Pradesh, India.