Curation Reports?

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Alex Pico

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May 3, 2020, 4:30:58 PM5/3/20
to wikipathw...@googlegroups.com, Daniela Digles
Looks like we missed a couple weeks of reports. Daniela, looks like you are up next. Are you available to go through the QC protocol at some point this next week?



 - Alex



Martens, Marvin (BIGCAT)

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May 3, 2020, 5:07:22 PM5/3/20
to wikipathw...@googlegroups.com, Daniela Digles

​Hi Alex,


Indeed, this was my week. Was planning that for today. I hope that is fine.


Kind regards,


Marvin Martens

PhD Candidate
Department of Bioinformatics (BiGCaT)
Universiteitensingel 50, room 1.314, 6229 ER, Maastricht, NL

From: wikipathw...@googlegroups.com <wikipathw...@googlegroups.com> on behalf of Alex Pico <alex...@gladstone.ucsf.edu>
Sent: 03 May 2020 22:30
To: wikipathw...@googlegroups.com
Cc: Daniela Digles
Subject: [wp-dev] Curation Reports?
 
Looks like we missed a couple weeks of reports. Daniela, looks like you are up next. Are you available to go through the QC protocol at some point this next week?



 - Alex



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Martens, Marvin (BIGCAT)

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May 3, 2020, 7:20:34 PM5/3/20
to wikipathw...@googlegroups.com, Daniela Digles

Hi all,


I completed the QA protocol. 


Lots of new, good-looking pathways. For some, corrected unconnected lines, added ontology tags, and updated approved tags. No special remarks on most of the pathways, and search of new pathways works well. 


One question on https://www.wikipathways.org/index.php/Pathway:WP4862​ from Kristina: I guess it will be developed more as it is related to CoV, but in the last 30 days, not much happened except from changing node styles. It is for the rest still a bunch of separate unconnected data nodes.


Next up: Daniela!


Kind regards,


Marvin Martens

PhD Candidate
Department of Bioinformatics (BiGCaT)
Universiteitensingel 50, room 1.314, 6229 ER, Maastricht, NL

From: wikipathw...@googlegroups.com <wikipathw...@googlegroups.com> on behalf of Martens, Marvin (BIGCAT) <marvin....@maastrichtuniversity.nl>
Sent: 03 May 2020 23:07

To: wikipathw...@googlegroups.com
Cc: Daniela Digles
Subject: Re: [wp-dev] Curation Reports?
 

Daniela Digles

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May 4, 2020, 6:40:32 AM5/4/20
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Hi Alex,

 

yes, I should be able to find some time this week.

 

Best regards,

Daniela

 

From: wikipathw...@googlegroups.com [mailto:wikipathw...@googlegroups.com] On Behalf Of Alex Pico


Sent: 03 May 2020 22:31
To: wikipathw...@googlegroups.com

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Kristina Hanspers

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May 4, 2020, 12:52:42 PM5/4/20
to wikipathw...@googlegroups.com, Daniela Digles
Hi Marvin,

Regarding WP4862, I will be working on that this week. Thanks for the reminder!

Kristina

Martens, Marvin (BIGCAT)

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Aug 5, 2020, 8:35:10 AM8/5/20
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Dear all,


Apologies for the delay, but here is my curation report:


Not too much things:

Mostly pathway edits by Egon and in pathways by Freddie. Also a bunch of tutorial/test pathways from last week. One of the people from the test pathways also made a nice one already, so I welcomed the author. 


One question I have is what to do with this one?

https://www.wikipathways.org/index.php/Pathway:WP471

​It's a classic old one, with low number of annotations and missing parts. Is it ready for deletion? 


Next up: Daniela!


Best,

Kristina Hanspers

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Aug 7, 2020, 1:45:00 PM8/7/20
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Hi Marvin,

Thanks for the report. I made some quick updates to WP471 so it is now in better shape.

Regards,

Kristina

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Martens, Marvin (BIGCAT)

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Feb 21, 2021, 3:05:10 PM2/21/21
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Dear all,


Curation report of this week:


No major issues. Mostly edits by Egon on clickable pathway nodes.


​One user (ExperiMed / Maximillian Saller) has created a couple of pathways, but the references in these do not autopopulate with the author/title info. Probably he only fills the pmid and doesn't let PathVisio search the info (pubmed links are present). Does anyone know this user? 

Kristina Hanspers

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Feb 22, 2021, 12:35:44 PM2/22/21
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Thanks Marvin. Nice catch on the incomplete PubMed references, I have contacted the user directly about how to fix it.

Best,

Kristina

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Martens, Marvin (BIGCAT)

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Sep 20, 2021, 10:07:08 AM9/20/21
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Dear all,


Curation report (of last week):


Only very few edits, mostly by Freddie on genes that represent dates and a histone gene. 


One interesting pathway is the 'return' of the bradykinin pathway which was made private some time ago, but now uploaded new? https://www.wikipathways.org/index.php/Pathway:WP5132


For the rest no remarks.


Next up: Daniela!


Best,


Marvin Martens

PhD Candidate
Department of Bioinformatics (BiGCaT)

From: Martens, Marvin (BIGCAT)
Sent: 21 February 2021 21:05
To: wikipathw...@googlegroups.com
Subject: Curation Report
 
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