Curation Week

[elisson.nlopes]

Hi team,

I just finished the weekly admin curation.

I lot of reactome new pathways. Its great!
And some:

*Under Construction: 

WP5048, 

*Add References:

WP3803

*Fix interations:

WP5046, WP5027, WP5035, WP5038, WP5041, WP515, WP1073, 

*Needs work:

WP5027, WP5033, WP5036, WP5050, WP5046, WP5044, WP5043, 

*Approved and highlight: 

WP4506

Thats all. 

Thanks,
Elisson

[Alex Pico]

This week we had:

 * 503 recently changed pathways! I manually reviewed 15. The others were by the ReactomeTeam account.

 * New pathways marked as approved and featured: 

https://www.wikipathways.org/index.php/Pathway:WP5049 

https://www.wikipathways.org/index.php/Pathway:WP5050 

 * 3 new authors contacted about approving a new pathway:

https://www.wikipathways.org/index.php/Pathway_Talk:WP5051#lqt_thread_873 

https://www.wikipathways.org/index.php/Pathway_Talk:WP5043#lqt_thread_874 

https://www.wikipathways.org/index.php/Pathway_Talk:WP5044#lqt_thread_875 

 * Community tags to update:

- Freddie, did you want to tag the latest version or are you awaiting additional rounds of curation? https://www.wikipathways.org/index.php/Pathway:WP4823 

 * 14 Under Construction:

- 1 tagged as long-term Incomplete

- Denise, are all the Blau ones still on hold for publishing reasons? 

- Marvin, there are some AOP ones coming up on a month. Are these on hold for a reason or can they be approved now?

 * Updated tags that were forgotten after making edits (it’s still way to easy to forget this step)

- 2 from Egon

- 4 from Alex (me)

- 6 from Denise

 * 5 deleted pathways: 3 Tutorials and 2 Requested by author

 * Tested search: it’s working!

Anders, you’re up next!

 - Alex

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[Anders Riutta]

Hi everyone,

We had a few new pathways and a good number of edits.

We also have some good content that was listed as "Under Construction". To promote this content to the next stage, here's what I saw:

• WP5026: will you be able to finish annotating the nodes, Denise and Egon?
• WP5027: I removed the Under Construction tag, but it still has the needs work tag. However, I'm not sure of any instructions to suggest for finishing it. Is it complete?:
  
• WP5033: Egon, is this just a gene list? Is it complete?
• WP5034: I promoted it from "Under Construction" to "Needs Work". Looks as if there are several metabolite nodes that need annotation.
• WP5035: needs references and ontology terms.
• WP5036: fix interactions and add ontology terms
• WP5043: annotate nodes and add ontology terms
• WP5044: add ontology terms, fix interactions and annotate nodes
• WP5046: fix interactions and add ontology terms

For stub pathways, we have WP5025. If we finish annotating the nodes, will this one be good to go?

Marvin, you're up next!

To view this discussion on the web, visit https://groups.google.com/d/msgid/wikipathways-devel/AE2E8C1F-DDB8-44FF-9F3F-7DFFC381E03D%40gladstone.ucsf.edu.

--

Anders Riutta

anders...@gladstone.ucsf.edu | Bioinformatics Core | Institute of Data Science and Biotechnology

Gladstone Institutes | Science Overcoming Disease

[Egon Willighagen]

Hi all,

On Mon, Feb 15, 2021 at 7:33 PM 'Anders Riutta' via wikipathways-devel <wikipathw...@googlegroups.com> wrote:

• WP5033: Egon, is this just a gene list? Is it complete?

It will be more. 

Egon

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Have you heard about Wikidata already? "Use Scholia and Wikidata to find scientific literature" is a new tutorial from my colleague Lauren Dupuis. https://laurendupuis.github.io/Scholia_tutorial/

-----

E.L. Willighagen
Department of Bioinformatics - BiGCaT
Maastricht University (http://www.bigcat.unimaas.nl/)
Homepage: http://egonw.github.com/
Blog: http://chem-bla-ics.blogspot.com/
PubList: https://www.zotero.org/egonw
ORCID: 0000-0001-7542-0286
ImpactStory: https://impactstory.org/u/egonwillighagen

[Daniela Digles]

Hi Anders,

 

I have a bachelor student who is at the moment annotating notes and interactions for pathways for one of the Blau chapters. WP5026 is one of these.

 

Best regards,

Daniela

To view this discussion on the web, visit https://groups.google.com/d/msgid/wikipathways-devel/CAJEHyTm4QjQet8it59T82Mv5Ybp21a_-SDTuS2gLQ3BPgWryAw%40mail.gmail.com.

[Kristina Hanspers]

Thanks Anders! The summary list of problematic pathways with details is very useful, I made some updates to WP5046, WP5044 and WP5036. 

Kristina

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