A Bioconductor AnnotationHub package for WikiPathways

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May 24, 2021, 7:56:21 PM5/24/21

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Hi WikiPathways dev,

I released a Bioconductor AnnotationHub package for WikiPathways.

This is a package that adds datasets like metabolite version of GMT file to the AnnotationHub.

I created this because I wanted to do MSEA using WikiPathways data.

I'd really appreciate it if you could give me your opinion (on AHWikipathwaysDbs).

One of the issues is that some metabolites do not have any ID information.

For now I have not included such metabolites in the dataset.

Please let me know if you have any ideas for this solution (preferably automatic).