error in installing WFDB

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anita pal

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Sep 17, 2014, 9:13:10 AM9/17/14

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wfdbtest

***Starting test of the WFDB Application Toolbox

If you have any problems with this test, please contact:

wfdb-matl...@physionet.org

**Checking if MATLAB JVM is running...

Running: system('"E:\Program File\Matlab\sys\java\jre\win32\jre\bin\"java -version')

java version "1.6.0_17"

Java(TM) SE Runtime Environment (build 1.6.0_17-b04)

Java HotSpot(TM) Client VM (build 14.3-b01, mixed mode)

ans =

**Printing Configuration Settings:

** WFDB App Toolbox Path is:

E:\Program File\Matlab\toolbox\mcode\wfdbloadlib.m

error executing: wfdb-config

java.io.IOException: Cannot run program "E:\Program File\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdb-config": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

config =

MATLAB_VERSION: '8.1.0.604 (R2013a)'

inOctave: 0

WFDB_VERSION: ''

WFDB_JAVA_HOME: ' E:\Program File\Matlab\toolbox\mcode\'

WFDB_NATIVE_BIN: ' E:\Program File\Matlab\toolbox\mcode\nativelibs\windows-x86\'

EXECUTING_DIR: ' null'

osName: 'windows'

fullOsName: ' Windows 7'

osArch: ' x86'

customArchFlag: ' false'

OSVersion: ' 6.1'

JVMVersion: ' 1.6.0_17]'

MATLAB_PATH: 'E:\Program File\Matlab\toolbox\mcode\'

SUPPORT_EMAIL: 'wfdb-matl...@physionet.org'

WFDB_JAVA_VERSION: 'wfdb-app-JVM6-0-9-6-1.jar'

DEBUG_LEVEL: 0

NETWORK_WAIT_TIME: 1000

WFDB_PATH: [1x88 char]

WFDBCAL: ' E:\Program File\Matlab\toolbox\mcode\\database\wfdbcal'

WFDB_CUSTOMLIB: 0

**Testing a WFDB linked executables this system...

Warning: Could not run linked executable

> In wfdbtest at 91

Warning: Error using cd

Too many input arguments.

> In wfdbtest at 92

**Testing native library on MATLAB JVM...

Executing: system('"E:\Program File\Matlab\sys\java\jre\win32\jre\bin\"java -cp wfdb-app-JVM6-0-9-6-1.jarwfdb-app-JVM6-0-9-6.jar org.physionet.wfdb.Wfdbexec rdsamp -r mitdb/100 -t s1')

java.lang.NoClassDefFoundError: org/physionet/wfdb/Wfdbexec

Caused by: java.lang.ClassNotFoundException: org.physionet.wfdb.Wfdbexec

at java.net.URLClassLoader$1.run(Unknown Source)

at java.security.AccessController.doPrivileged(Native Method)

at java.net.URLClassLoader.findClass(Unknown Source)

at java.lang.ClassLoader.loadClass(Unknown Source)

at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)

at java.lang.ClassLoader.loadClass(Unknown Source)

at java.lang.ClassLoader.loadClassInternal(Unknown Source)

Could not find the main class: org.physionet.wfdb.Wfdbexec. Program will exit.

Exception in thread "main"

ans =

**Querying PhysioNet for available databases...

error executing: wfdb-config

java.io.IOException: Cannot run program "E:\Program File\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdb-config": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

java.net.UnknownHostException: physionet.org

at java.net.PlainSocketImpl.connect(Unknown Source)

at java.net.SocksSocketImpl.connect(Unknown Source)

at java.net.Socket.connect(Unknown Source)

at sun.net.NetworkClient.doConnect(Unknown Source)

at sun.net.www.http.HttpClient.openServer(Unknown Source)

at sun.net.www.http.HttpClient.<init>(Unknown Source)

at sun.net.www.http.HttpClient.New(Unknown Source)

at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(Unknown Source)

at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source)

at sun.net.www.protocol.http.HttpURLConnection.connect(Unknown Source)

at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source)

at java.net.URL.openStream(Unknown Source)

at org.physionet.wfdb.physiobank.PhysioNetDB.getPhysioNetDBList(Unknown Source)

at org.physionet.wfdb.physiobank.PhysioNetDB.main(Unknown Source)

0 databases available for download (type 'help physionetdb' for more info).

**Reading local example data and annotation...

error executing: wfdb-config

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdb-config": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\rdsamp": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToDoubleArray(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 2 more

Warning: Failed running: cd(E:\Program File\Matlab\toolbox\mcode\\example\);[tm,

signal]=rdsamp(a01,[],10000);

> In wfdbtest at 164

error executing: wfdbtime

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdbtime": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

Warning: Attempt to reference field of non-structure array.

> In wfdbtest at 178

**Calculating maternal QRS sample data ...

error executing: wqrs

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wqrs": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

error executing: wfdbtime

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdbtime": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

Warning: Attempt to reference field of non-structure array.

> In wfdbtest at 198

**Reading data from PhysioNet...

error executing: wfdb-config

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdb-config": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\rdsamp": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToDoubleArray(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 2 more

Warning: Index exceeds matrix dimensions.

> In wfdbtest at 226

***Finished testing WFDB App Toolbox!

***Note: You currently have access to 0 databases for download via PhysioNet:

Type 'physionetdb' for a list of the databases or 'help physionetdb' for more info.

>> cd([config.WFDB_JAVA_HOME(2:end) 'example'])

wfdbexec('wfdbdesc',{'100a'})

error executing: wfdb-config

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdb-config": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

error executing: wfdbdesc

java.io.IOException: Cannot run program "E:\Matlab\toolbox\mcode\nativelibs\windows-x86\bin\wfdbdesc": CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessBuilder.start(Unknown Source)

at org.physionet.wfdb.Wfdbexec.execToStringList(Unknown Source)

Caused by: java.io.IOException: CreateProcess error=2, The system cannot find the file specified

at java.lang.ProcessImpl.create(Native Method)

at java.lang.ProcessImpl.<init>(Unknown Source)

at java.lang.ProcessImpl.start(Unknown Source)

... 3 more

Attempt to reference field of non-structure array.

Error in wfdbexec (line 137)

varargout{1}=cell(javaWfdbExec.execToStringList(varargin{2}).toArray);

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