problem reading hypnogram annotation

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Mahdi Rahbar

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Mar 18, 2016, 3:02:01 PM3/18/16
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I’m using sleep EEG signal from sleep-edfx database in Matlab for the purpose of sleep stages extraction. I have used wfdb2mat function for the signal but I have trouble reading hypnogram annotations in Matlab.

I have entered this code:


wfdb2mat('sleep-edfx/SC4002EC-Hypnogram.edf')

hypno=load('SC4002EC-Hypnogram_edfm');


In fact, I can’t find the relation between the hypnogram values & sleep-stages

I want to align the hypnogram with the corresponding EEG signal so that hypnogram values describing the sleep stage and the sample index relevant to time. In addition, the signal & it’s hypnogram must have the same length.


I really need your help. thanks alot

here is my configuration:

config = 


       MATLAB_VERSION: '8.3.0.532 (R2014a)'

             inOctave: 0

         WFDB_VERSION: '[10.5.24]'

       WFDB_JAVA_HOME: ' E:\Thesis\Matlab Codes\'

      WFDB_NATIVE_BIN: ' E:\Thesis\Matlab Codes\nativelibs\windows\'

        EXECUTING_DIR: ' null'

               osName: 'windows'

           fullOsName: ' Windows 7'

               osArch: ' amd64'

       customArchFlag: ' false'

            OSVersion: ' 6.1'

           JVMVersion: ' 1.7.0_11]'

          MATLAB_PATH: 'E:\Thesis\Matlab Codes\'

    WFDB_JAVA_VERSION: 'wfdb-app-JVM7-0-9-10.jar'

          DEBUG_LEVEL: 0

    NETWORK_WAIT_TIME: 1000

          MATLAB_ARCH: 'win64'

            WFDB_PATH: '. E:\Thesis\Matlab Codes\..\database\ http://physionet.org/physiobank/database/'

              WFDBCAL: ' E:\Thesis\Matlab Codes\\database\wfdbcal'

       WFDB_CUSTOMLIB: 0

         CACHE_SOURCE: 'http://physionet.org/physiobank/database/'

           CACHE_DEST: 'E:\Thesis\Matlab Codes\..\database\'

                CACHE: 1

Hassan Albalawi

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Aug 26, 2016, 10:29:04 PM8/26/16
to wfdb-app-toolbox
I'd recommend you have a look at this toolbox:

https://github.com/anasimtiaz/sleep-edfx-toolbox

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