Content of zipped results folder

[Florian Schober]

Hi,

I am usually downloading the Webgestalt output as a zipped folder, store it locally and access it via R. I cannot find a result file that would link an enriched category with every member in it, regardless of the sign, i.e. a category with a negative enrichment score would only  return members with a negative sign in "enrichment_results_wg_result.*.txt" However, from the running ES plot it is clear that these do actually exist.

Is there a way to conveniently extract this info, without going via secondary packages?

Thank you for your help!

Florian

[Yuxing Liao]

Hi Florian,

I am not sure what you need exactly. But here are several related things:

• the genes in the leading edge are concatenated in the result file (which probably you've seen)
• all the genes in a gene set. This is basically the GMT file or database, which can be downloaded from the result webpage in the top Job Summary section.
• All the information to produce the enrichment plot. This can only be saved with an option in our R package (not on the server).

Yuxing

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