WiKi pathway GMT file API error

[Isha S.]

I am trying to access the following Wiki pathway GMT file for one of my analyses. However, it shows an error "Gene set file is not found."

https://2024.webgestalt.org/api/geneset?organism=dmelanogaster&database=pathway_WikiPathways&fileType=gmt

Requesting you to please look into it and share this file.

Thanks in advance.

Isha

Isha Shinde
PhD JRF - Health Science
C/O Dr Pratik Chandrani
Medical Oncology Molecular Lab, TMH
Computational Biology Bioinformatics and Crosstalk Lab, ACTREC
Tata Memorial Centre
Tel (lab): +91 - 22 - 2417 7000 (ext. 5737)

[John Elizarraras]

Hello,

We recently added a new parameter to the geneset API which was not updated to the R package yet which causes this error. I will update that now, but the correct URL would be https://2024.webgestalt.org/api/geneset?organism=dmelanogaster&database=pathway_WikiPathways&fileType=gmt&version=2024.

Best,

John