webgestalt

Thank you! I'll try that. Kimberly On Tuesday, July 23, 2024 at 11:16:00 AM UTC-4 John

It works fine. Thank you very much. Best regards, Anna Στις Δευτέρα 22 Ιουλίου 2024 στις 7:14:29 μ.μ.

It is now, perfectly working. Thank you so much for your help. Best, Fernando. El lunes, 1 de julio

Hello, This may have been due to some server issues we had, depending on the time you ran the ID

We currently only support pre-ranked inputs. However, we are working on improving the visualizations

Dear Devs, The Molecular Signatures Database (MSigDB) is a popular resource for gene sets. Their

Hi John, Thanks for the detailed explanation. Best wishes, Ilian On Monday, May 13, 2024 at 10:40:53

This is a drastic difference. I previously spent some time looking into the underlying cause of the

A good starting point could be looking at Google Scholar: https://scholar.google.com/scholar?cites=

Hello, I believe this is a result of the functionality of GSEA. It doesn't necessarily care about

Hello, I am trying to run GSEA on custom database and getting the above error. Attached the

Sorry for the bug, but that should not have any affect on the data output. For those sequences, I

Sorry for the delayed response. GSEA creates random permutations to create a sample population.

terrible application

Thank you very much for your kind reply. Best regards Chiara Il giorno gio 7 dic 2023 alle ore 21:27

Hi all, The requirements for the network 'Kinase target' is different for human than for

Hi Alessandro, The input is too small. Someone in the last two threads just asked the same question.

Hi Guys, This is one of my first times using webgestalt so I was hoping to get some help. When I

If you're pre-filtering your list you should run ORA not GSEA. As stated, running GSEA on data

Hello Ilian, I did a quick experiment by changing the rank offset of a list of scores . The original

Hi Isaac, It is from R. Basically means smaller than 2.2e-16. Yuxing On Thu, Oct 5, 2023 at 11:22 AM

Good Morning everybody I'm new to this field and need to functionally annotated and enrich for

Yuxing, thank you for the quick response! Changing the hostname parameter didn't work but

Hi, Are you doing GSEA? The nature of the permutation test will have small fluctuations. You should

Thank you so much, Yuxing! I can't believe I missed them. Appreciate your help! On Friday, July

Hi, It is probably because you mean interestGeneType="genesymbol" instead of

Hi Marianna, The file is expected to have two columns with a tab separating them. Could you attach an

Hi, could you try again? There was a problem with the server earlier today. Yuxing On Mon, Jul 3,

Hi, why negative enrichment of some GO on volcano plot in ORA?

Hi Alex, I think because we run preranked GSEA. It should permutate by gene set. Understand and keep